Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p011525 Quercus lobata HOM05D001776 ORTHO05D001771 4.2e-68 261.2 125 100.0
QL11p009249 Quercus lobata HOM05D001776 ORTHO05D001771 2.9e-45 185.3 99 88.9
Dinv12597 Davidia involucrata HOM05D001776 ORTHO05D001771 5.4e-31 137.9 115 54.8
Dinv26467 Davidia involucrata HOM05D001776 ORTHO05D001771 3.5e-30 135.2 128 50.8
GSVIVG01032322001 Vitis vinifera HOM05D001776 ORTHO05D001771 8.6e-29 130.6 111 62.2
TAR626G1512 Trochodendron aralioides HOM05D001776 ORTHO05D001771 9.5e-28 127.1 98 61.2
Cpa.g.sc115.32 Carica papaya HOM05D001776 ORTHO05D001771 6.1e-27 124.4 106 60.4
Cfa020736 Carpinus fangiana HOM05D001776 ORTHO05D001771 1.4e-26 123.2 100 63.0
TAR383G0816 Trochodendron aralioides HOM05D001776 ORTHO05D001771 4.0e-26 121.7 98 60.2
Atru.chr7.974 Acer truncatum HOM05D001776 ORTHO05D001771 8.9e-26 120.6 102 57.8
Duzib150G1194 Durio zibethinus HOM05D001776 ORTHO05D001771 1.2e-25 120.2 91 64.8
Thecc.09G194000 Theobroma cacao HOM05D001776 ORTHO05D001771 2.0e-25 119.4 104 58.7
CiPaw.15G155200 Carya illinoinensis HOM05D001776 ORTHO05D001771 7.5e-25 117.5 93 64.5
Manes.15G099400 Manihot esculenta HOM05D001776 ORTHO05D001771 7.5e-25 117.5 105 54.3
Eucgr.C00067 Eucalyptus grandis HOM05D001776 ORTHO05D001771 1.7e-24 116.3 108 50.9
CiPaw.16G103200 Carya illinoinensis HOM05D001776 ORTHO05D001771 2.2e-24 115.9 101 63.4
Potri.018G146700 Populus trichocarpa HOM05D001776 ORTHO05D001771 3.7e-24 115.2 95 56.8
Nn8g41094 Nelumbo nucifera HOM05D001776 ORTHO05D001771 4.9e-24 114.8 100 58.0
TWI32G0050 Tripterygium wilfordii HOM05D001776 ORTHO05D001771 4.9e-24 114.8 115 57.4
RcHm_v2.0_Chr4g0397961 Rosa chinensis HOM05D001776 ORTHO05D001771 1.1e-23 113.6 95 62.1
Hma1.2p1_0314F.1_g121970 Hydrangea macrophylla HOM05D001776 ORTHO05D001771 1.4e-23 113.2 100 57.0
Ciclev10008843m.g Citrus clementina HOM05D001776 ORTHO05D001771 1.9e-23 112.8 92 59.8
FvH4_4g06240 Fragaria vesca HOM05D001776 ORTHO05D001771 3.2e-23 112.1 95 61.1
FAN07G0851 Fragaria x ananassa HOM05D001776 ORTHO05D001771 3.2e-23 112.1 95 61.1
FAN17G1350 Fragaria x ananassa HOM05D001776 ORTHO05D001771 3.2e-23 112.1 95 61.1
FAN22G1406 Fragaria x ananassa HOM05D001776 ORTHO05D001771 3.2e-23 112.1 95 61.1
Duzib168G1817 Durio zibethinus HOM05D001776 ORTHO05D001771 7.0e-23 110.9 108 53.7
Aqoxy7G02693 Aquilegia oxysepala HOM05D001776 ORTHO05D001771 9.2e-23 110.5 103 54.4
FAN12G2880 Fragaria x ananassa HOM05D001776 ORTHO05D001771 1.6e-22 109.8 95 60.0
Haze_19051 Corylus avellana HOM05D001776 ORTHO05D001771 2.0e-22 109.4 100 60.0
Prupe.1G065600 Prunus persica HOM05D001776 ORTHO05D001771 4.6e-22 108.2 100 57.0
PSO063G5421 Papaver somniferum HOM05D001776 ORTHO05D001771 1.7e-21 106.3 111 51.4
Actinidia31883 Actinidia chinensis HOM05D001776 ORTHO05D001771 3.9e-21 105.1 115 52.2
CSS0006410 Camellia sinensis var. sinensis HOM05D001776 ORTHO05D001771 3.9e-21 105.1 107 52.3
TWI34G1874 Tripterygium wilfordii HOM05D001776 ORTHO05D001771 3.9e-21 105.1 97 62.9
Potri.018G145500 Populus trichocarpa HOM05D001776 ORTHO05D001771 5.0e-21 104.8 95 54.7
Lj2g0010885 Lotus japonicus HOM05D001776 ORTHO05D001771 1.1e-20 103.6 101 46.5
TPR.G21354 Trifolium pratense HOM05D001776 ORTHO05D001771 1.1e-20 103.6 99 50.5
Actinidia38521 Actinidia chinensis HOM05D001776 ORTHO05D001771 1.9e-20 102.8 114 48.2
Peaxi162Scf00954g00319 Petunia axillaris HOM05D001776 ORTHO05D001771 3.3e-20 102.1 95 54.7
VMungo0464G1505 Vigna mungo HOM05D001776 ORTHO05D001771 5.6e-20 101.3 102 48.0
Actinidia02483 Actinidia chinensis HOM05D001776 ORTHO05D001771 7.3e-20 100.9 105 51.4
PGR142G2549 Punica granatum HOM05D001776 ORTHO05D001771 7.3e-20 100.9 82 59.8
Nitab4.5_0004188g0070 Nicotiana tabacum HOM05D001776 ORTHO05D001771 1.2e-19 100.1 95 51.6
MELO3C003942.2 Cucumis melo HOM05D001776 ORTHO05D001771 1.6e-19 99.8 115 45.2
Gohir.A05G001300 Gossypium hirsutum HOM05D001776 ORTHO05D001771 1.6e-19 99.8 91 57.1
Gohir.D05G001600 Gossypium hirsutum HOM05D001776 ORTHO05D001771 1.6e-19 99.8 102 51.0
Gorai.009G001500 Gossypium raimondii HOM05D001776 ORTHO05D001771 1.6e-19 99.8 102 51.0
CsaV3_2G009010 Cucumis sativus L. HOM05D001776 ORTHO05D001771 2.1e-19 99.4 115 44.3
Hma1.2p1_0284F.1_g113830 Hydrangea macrophylla HOM05D001776 ORTHO05D001771 3.6e-19 98.6 96 54.2
Phvul.004G177500 Phaseolus vulgaris HOM05D001776 ORTHO05D001771 3.6e-19 98.6 93 49.5
arahy.Tifrunner.gnm1.ann1.N90ILP Arachis hypogaea HOM05D001776 ORTHO05D001771 4.7e-19 98.2 110 50.0
arahy.Tifrunner.gnm1.ann1.QSQE7C Arachis hypogaea HOM05D001776 ORTHO05D001771 4.7e-19 98.2 110 50.0
CANSAT80G0007 Cannabis sativa HOM05D001776 ORTHO05D001771 6.2e-19 97.8 82 61.0
AUR62028014 Chenopodium quinoa HOM05D001776 ORTHO05D001771 6.2e-19 97.8 89 59.6
MBI13_g34294_MAGBIO Magnolia biondii HOM05D001776 ORTHO05D001771 8.0e-19 97.4 96 54.2
CSS0027028 Camellia sinensis var. sinensis HOM05D001776 ORTHO05D001771 1.1e-18 97.1 113 46.0
AUR62020710 Chenopodium quinoa HOM05D001776 ORTHO05D001771 1.1e-18 97.1 98 57.1
Glyma.07G130300 Glycine max HOM05D001776 ORTHO05D001771 1.1e-18 97.1 93 52.7
Actinidia13370 Actinidia chinensis HOM05D001776 ORTHO05D001771 2.3e-18 95.9 100 51.0
ClCG11G011500 Citrullus lanatus HOM05D001776 ORTHO05D001771 4.0e-18 95.1 115 44.3
vmacro22291 Vaccinium macrocarpon HOM05D001776 ORTHO05D001771 6.8e-18 94.4 112 43.8
Ca_25630_v3 Cicer arietinum L. HOM05D001776 ORTHO05D001771 1.5e-17 93.2 101 47.5
Cc00_g00460 Coffea canephora HOM05D001776 ORTHO05D001771 2.0e-17 92.8 92 55.4
MD16G1239500 Malus domestica HOM05D001776 ORTHO05D001771 2.6e-17 92.4 100 48.0
Potri.006G077600 Populus trichocarpa HOM05D001776 ORTHO05D001771 2.6e-17 92.4 89 59.6
Rhsim03G0268500 Rhododendron simsii HOM05D001776 ORTHO05D001771 3.4e-17 92.0 111 45.0
Aa31LG9G5220 Aethionema arabicum HOM05D001776 ORTHO05D001771 7.5e-17 90.9 83 54.2
Medtr6g093020 Medicago truncatula HOM05D001776 ORTHO05D001771 7.5e-17 90.9 103 45.6
THA.LOC104815317 Tarenaya hassleriana HOM05D001776 ORTHO05D001771 7.5e-17 90.9 99 49.5
Glyma.01G002200 Glycine max HOM05D001776 ORTHO05D001771 1.3e-16 90.1 68 61.8
Sed0013888 Sechium edule HOM05D001776 ORTHO05D001771 2.9e-16 89.0 104 44.2
CDE04G2318 Ceratophyllum demersum HOM05D001776 ORTHO05D001771 3.7e-16 88.6 98 48.0
Hund19364 Selenicereus undatus HOM05D001776 ORTHO05D001771 3.7e-16 88.6 123 44.7
EL10Ac2g03640 Beta vulgaris HOM05D001776 ORTHO05D001771 6.4e-16 87.8 107 50.5
Oeu057461.1 Olea europaea HOM05D001776 ORTHO05D001771 8.3e-16 87.4 95 46.3
Ca_25603_v3 Cicer arietinum L. HOM05D001776 ORTHO05D001771 1.1e-15 87.0 93 47.3
THA.LOC104808910 Tarenaya hassleriana HOM05D001776 ORTHO05D001771 1.1e-15 87.0 100 45.0
MSTRG.10463 Avicennia marina HOM05D001776 ORTHO05D001771 2.4e-15 85.9 79 50.6
MSTRG.26521 Avicennia marina HOM05D001776 ORTHO05D001771 2.4e-15 85.9 123 41.5
Lalb_Chr24g0401801 Lupinus albus HOM05D001776 ORTHO05D001771 1.2e-14 83.6 97 47.4
SGA_v2.0_scaffold31G12721 Striga asiatica HOM05D001776 ORTHO05D001771 1.2e-14 83.6 91 50.5
AL7G44140 Arabidopsis lyrata HOM05D001776 ORTHO05D001771 2.7e-14 82.4 74 55.4
Ca_25632_v3 Cicer arietinum L. HOM05D001776 ORTHO05D001771 3.5e-14 82.0 97 43.3
PGSC0003DMG400013699 Solanum tuberosum HOM05D001776 ORTHO05D001771 3.5e-14 82.0 95 47.4
Sopen05g027760 Solanum pennellii HOM05D000002 ORTHO05D000001 6.0e-14 81.3 95 47.4
SGA_v2.0_scaffold21G09625 Striga asiatica HOM05D001776 ORTHO05D001771 6.0e-14 81.3 83 49.4
CAN.G106.15 Capsicum annuum HOM05D001776 ORTHO05D001771 7.8e-14 80.9 95 47.4
Medtr3g435450 Medicago truncatula HOM05D001776 ORTHO05D001771 1.3e-13 80.1 111 38.7
Sc23g0004330 Simmondsia chinensis HOM05D001776 ORTHO05D001771 1.3e-13 80.1 84 51.2
HanXRQChr03g0067341 Helianthus annuus HOM05D001776 ORTHO05D001771 2.3e-13 79.3 112 40.2
PSO478G1737 Papaver somniferum HOM05D001776 ORTHO05D001771 3.0e-13 79.0 69 58.0
Sabra06G0058700 Salix brachista HOM05D001776 ORTHO05D001771 3.0e-13 79.0 59 69.5
COL.COLO4_33454 Corchorus olitorius HOM05D001776 ORTHO05D001771 3.9e-13 78.6 91 48.4
SGA_v2.0_scaffold693G53460 Striga asiatica HOM05D001776 ORTHO05D001771 3.9e-13 78.6 76 51.3
PSO017G4274 Papaver somniferum HOM05D001776 ORTHO05D001771 5.1e-13 78.2 69 58.0
Oeu036947.1 Olea europaea HOM05D001776 ORTHO05D001771 8.6e-13 77.4 113 43.4
SalBow6G0354 Salvia bowleyana HOM05D001776 ORTHO05D001771 8.6e-13 77.4 128 37.5
AT5G35330 Arabidopsis thaliana HOM05D001776 ORTHO05D001771 1.1e-12 77.0 74 52.7
Thhalv10003457m.g Eutrema salsugineum HOM05D001776 ORTHO05D001771 1.1e-12 77.0 88 47.7
HanXRQChr12g0359211 Helianthus annuus HOM05D001776 ORTHO05D001771 1.1e-12 77.0 97 42.3
Migut.B00848 Erythranthe guttata HOM05D001776 ORTHO05D001771 1.5e-12 76.6 69 58.0
ECA234G3906 Erigeron canadensis HOM05D001776 ORTHO05D001771 1.9e-12 76.3 103 39.8
CARHR217370 Cardamine hirsuta HOM05D001776 ORTHO05D001771 2.5e-12 75.9 67 53.7
HanXRQChr09g0245901 Helianthus annuus HOM05D001776 ORTHO05D001771 2.5e-12 75.9 110 40.0
Nitab4.5_0000413g0060 Nicotiana tabacum HOM05D001776 ORTHO05D001771 3.3e-12 75.5 89 48.3
Peaxi162Scf00320g00413 Petunia axillaris HOM05D001776 ORTHO05D001771 4.3e-12 75.1 100 47.0
vmacro20780 Vaccinium macrocarpon HOM05D001776 ORTHO05D001771 5.6e-12 74.7 87 49.4
Os09g0494300 Oryza sativa ssp. japonica HOM05D001776 ORTHO05D001771 7.3e-12 74.3 118 36.4
A08p09650 Brassica napus HOM05D001776 ORTHO05D001771 9.5e-12 73.9 73 54.8
BraA08t32962Z Brassica rapa HOM05D001776 ORTHO05D001771 9.5e-12 73.9 73 54.8
Ah.11g044270 Amaranthus hybridus HOM05D001776 ORTHO05D001771 1.2e-11 73.6 71 56.3
Nitab4.5_0001205g0020 Nicotiana tabacum HOM05D001776 ORTHO05D001771 2.1e-11 72.8 83 49.4
ECA240G0360 Erigeron canadensis HOM05D001776 ORTHO05D001771 2.8e-11 72.4 73 46.6
Medtr3g435470 Medicago truncatula HOM05D001776 ORTHO05D001771 2.8e-11 72.4 70 47.1
BcaC07g37670 Brassica carinata HOM05D001776 ORTHO05D001771 4.7e-11 71.6 79 51.9
BolC8t48040H Brassica oleracea HOM05D001776 ORTHO05D001771 4.7e-11 71.6 79 51.9
Nitab4.5_0005411g0070 Nicotiana tabacum HOM05D001776 ORTHO05D001771 6.2e-11 71.2 53 62.3
Nn2g12782 Nelumbo nucifera HOM05D001776 ORTHO05D001771 8.1e-11 70.9 61 60.7
CDE07G1244 Ceratophyllum demersum HOM05D002718 ORTHO05D003027 1.8e-10 69.7 51 64.7
Oeu021032.1 Olea europaea HOM05D001776 ORTHO05D001771 1.8e-10 69.7 113 40.7
Oeu000375.3 Olea europaea HOM05D001776 ORTHO05D001771 2.3e-10 69.3 97 44.3
Oeu015727.1 Olea europaea HOM05D001776 ORTHO05D001771 2.3e-10 69.3 88 47.7
BcaB04g18054 Brassica carinata HOM05D001776 ORTHO05D001771 3.1e-10 68.9 73 52.1
unitig_899.g15185 Utricularia gibba HOM05D005244 ORTHO05D006539 4.0e-10 68.6 94 41.5
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 6.8e-10 67.8 72 54.2
SEGI_01377 Sequoiadendron giganteum HOM05D001776 ORTHO05D001771 1.5e-09 66.6 101 36.6
Oeu052293.1 Olea europaea HOM05D001776 ORTHO05D001771 2.0e-09 66.2 86 44.2
Lsat_1_v5_gn_7_57621 Lactuca sativa HOM05D001776 ORTHO05D001771 3.4e-09 65.5 73 42.5
Lsat_1_v5_gn_5_82421 Lactuca sativa HOM05D001776 ORTHO05D001771 4.4e-09 65.1 41 65.9
Zm00001eb102090 Zea mays HOM05D001776 ORTHO05D001771 4.4e-09 65.1 69 44.9
Lj5A743T19 Lonicera japonica HOM05D001776 ORTHO05D001771 7.5e-09 64.3 58 62.1
Oeu028810.1 Olea europaea HOM05D001776 ORTHO05D001771 7.5e-09 64.3 98 43.9
HPP92_010798 Vanilla planifolia HOM05D001776 ORTHO05D001771 7.5e-09 64.3 43 65.1
HPP92_017094 Vanilla planifolia HOM05D001776 ORTHO05D001771 2.9e-08 62.4 91 45.1
ATR0626G029 Amborella trichopoda HOM05D001776 ORTHO05D001771 4.9e-08 61.6 82 42.7
Zm00001eb120500 Zea mays HOM05D001776 ORTHO05D001771 4.9e-08 61.6 66 45.5
Migut.J00832 Erythranthe guttata HOM05D001776 ORTHO05D001771 8.3e-08 60.8 75 45.3
Carub.0007s3115 Capsella rubella HOM05D001776 ORTHO05D001771 1.1e-07 60.5 75 46.7
Thhalv10003468m.g Eutrema salsugineum HOM05D001776 ORTHO05D001771 1.4e-07 60.1 42 64.3
Os06g0702100 Oryza sativa ssp. japonica HOM05D001776 ORTHO05D001771 1.9e-07 59.7 73 45.2
TPR.G21362 Trifolium pratense HOM05D001776 ORTHO05D001771 2.4e-07 59.3 38 68.4
unitig_8.g4679 Utricularia gibba HOM05D001776 ORTHO05D001771 4.1e-07 58.5 103 35.9
Zm00001eb317100 Zea mays HOM05D001776 ORTHO05D001771 9.2e-07 57.4 41 58.5
Medtr3g037440 Medicago truncatula HOM05D001776 ORTHO05D001771 3.5e-06 55.5 63 42.9


User provided reference genes

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