Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 2.1e-155 552.4 291 100.0
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 2.4e-138 495.7 291 83.5
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.5e-137 493.0 291 82.8
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 7.6e-137 490.7 291 83.2
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 7.6e-137 490.7 291 82.8
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 2.2e-136 489.2 291 81.8
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 6.4e-136 487.6 291 82.8
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 1.1e-135 486.9 291 82.1
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 1.1e-135 486.9 290 85.5
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 1.4e-135 486.5 291 81.1
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.4e-135 486.5 291 82.8
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.4e-135 486.5 291 81.8
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.4e-135 486.5 293 82.9
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 2.4e-135 485.7 291 82.5
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 5.4e-135 484.6 291 81.8
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.2e-134 483.4 291 81.4
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 2.7e-134 482.3 291 81.4
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 4.6e-134 481.5 292 82.2
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 7.9e-134 480.7 289 81.7
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.3e-133 479.9 291 81.1
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 3.0e-133 478.8 291 81.1
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 8.7e-133 477.2 291 80.8
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 1.3e-131 473.4 289 80.3
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 1.6e-131 473.0 290 83.4
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 2.1e-131 472.6 289 79.9
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 4.8e-131 471.5 291 80.1
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 4.8e-131 471.5 291 79.4
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 8.1e-131 470.7 305 77.7
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 1.1e-130 470.3 322 75.2
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 1.4e-130 469.9 291 81.1
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 3.1e-130 468.8 289 79.6
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 4.0e-130 468.4 293 79.2
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 5.3e-130 468.0 291 78.4
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 6.9e-130 467.6 289 78.5
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 2.6e-129 465.7 289 78.2
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 5.8e-129 464.5 325 72.6
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 9.9e-129 463.8 289 81.0
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 9.9e-129 463.8 291 78.4
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 4.9e-128 461.5 291 77.0
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 1.1e-127 460.3 289 78.9
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 3.2e-127 458.8 280 80.7
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 2.7e-126 455.7 292 80.5
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 2.7e-126 455.7 291 77.3
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 4.6e-126 454.9 296 78.4
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 6.0e-126 454.5 291 77.0
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 1.0e-125 453.8 320 72.5
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 1.8e-125 453.0 291 79.4
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 2.3e-125 452.6 291 78.7
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 3.0e-125 452.2 293 76.1
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 5.1e-125 451.4 291 77.0
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 6.7e-125 451.1 292 77.4
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 6.7e-125 451.1 265 84.2
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 1.5e-124 449.9 289 78.9
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 2.5e-124 449.1 291 75.9
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 4.3e-124 448.4 289 78.2
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 7.4e-124 447.6 291 76.6
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.6e-123 446.4 291 75.6
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 8.2e-123 444.1 289 77.9
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 1.1e-122 443.7 291 75.3
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 2.4e-122 442.6 291 75.6
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 2.4e-122 442.6 291 75.3
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 4.0e-122 441.8 290 76.2
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 5.3e-122 441.4 290 76.2
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 9.0e-122 440.7 291 74.9
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 3.4e-121 438.7 293 73.7
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 4.5e-121 438.3 291 74.9
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 4.5e-121 438.3 292 76.7
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 1.3e-120 436.8 291 74.2
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 1.7e-120 436.4 328 69.8
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 2.2e-120 436.0 291 72.5
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 2.2e-120 436.0 291 75.9
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.2e-120 436.0 307 73.6
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.9e-120 435.6 309 73.5
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 2.9e-120 435.6 292 77.7
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 3.8e-120 435.3 291 74.9
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 1.1e-119 433.7 267 78.7
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 2.7e-118 429.1 291 72.5
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 6.0e-118 427.9 291 75.9
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 6.0e-118 427.9 291 75.9
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 7.9e-118 427.6 295 74.2
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 1.8e-117 426.4 292 74.0
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 2.3e-117 426.0 291 72.5
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 1.5e-116 423.3 291 70.8
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 2.8e-115 419.1 292 71.6
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 3.7e-115 418.7 290 73.8
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 3.1e-114 415.6 291 69.8
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 4.1e-114 415.2 237 86.1
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 5.3e-114 414.8 293 69.3
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 6.9e-114 414.5 285 73.7
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 6.9e-114 414.5 293 72.4
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 1.5e-113 413.3 289 74.4
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 2.6e-113 412.5 289 74.4
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.7e-112 409.8 291 71.8
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 6.5e-112 407.9 291 70.8
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 6.5e-112 407.9 291 70.8
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 8.5e-112 407.5 384 59.4
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 1.9e-111 406.4 291 72.5
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 9.4e-111 404.1 289 72.7
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 2.7e-110 402.5 291 68.4
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 6.1e-110 401.4 291 71.1
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 1.8e-109 399.8 291 71.1
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 2.3e-109 399.4 291 70.4
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 3.0e-109 399.1 291 72.9
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 3.0e-109 399.1 290 72.8
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 5.1e-109 398.3 292 70.9
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 1.1e-108 397.1 291 72.5
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 1.5e-108 396.7 292 70.2
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 2.0e-108 396.4 292 70.9
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 3.7e-107 392.1 292 69.5
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 2.4e-106 389.4 299 66.2
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 2.0e-105 386.3 227 84.1
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 5.9e-105 384.8 291 69.4
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 6.1e-102 374.8 296 67.9
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 2.6e-100 369.4 291 64.9
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 8.2e-99 364.4 290 64.8
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 1.8e-98 363.2 226 78.3
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 5.5e-95 351.7 297 62.3
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 8.0e-94 347.8 291 62.5
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 5.2e-93 345.1 191 88.0
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 8.8e-93 344.4 259 71.0
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 1.1e-92 344.0 291 64.3
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 2.0e-92 343.2 260 69.2
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 4.4e-92 342.0 292 59.9
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 8.2e-91 337.8 238 71.4
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 1.6e-89 333.6 207 79.7
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 1.6e-86 323.6 285 60.7
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 1.4e-82 310.5 280 57.9
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 5.2e-77 292.0 184 76.1
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.2e-76 290.8 191 73.8
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 1.8e-74 283.5 296 52.7
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 7.0e-74 281.6 293 48.5
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 2.0e-73 280.0 202 70.3
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 2.7e-65 253.1 293 48.1
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 3.9e-64 249.2 289 51.2
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 7.3e-55 218.4 294 45.9
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 7.3e-55 218.4 294 45.9
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 7.3e-55 218.4 294 45.9
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 2.7e-49 199.9 261 46.0
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.0e-48 196.4 105 91.4
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 2.3e-45 186.8 108 84.3
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 2.1e-41 173.7 117 70.9
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 1.5e-39 167.5 150 56.7
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 6.2e-38 162.2 154 57.8
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.8e-37 160.6 154 57.1
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.8e-37 160.6 154 57.1
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 1.9e-34 150.6 84 88.1
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 3.2e-34 149.8 190 42.6
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 5.8e-28 129.0 73 83.6
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 5.8e-28 129.0 73 83.6
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 2.2e-27 127.1 91 69.2
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 2.9e-27 126.7 72 83.3
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 5.4e-26 122.5 107 56.1
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 7.3e-23 112.1 68 76.5
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 2.1e-22 110.5 93 65.6
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 4.9e-19 99.4 128 43.0
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 1.4e-18 97.8 60 70.0
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 2.1e-17 94.0 187 36.9
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 9.6e-15 85.1 59 69.5
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 2.1e-14 84.0 231 30.7
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 2.4e-13 80.5 58 72.4
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 2.2e-11 73.9 86 48.8
GSVIVG01012950001 Vitis vinifera HOM05D004410 ORTHO05D438744 2.5e-07 60.5 44 61.4
GSVIVG01012952001 Vitis vinifera HOM05D004410 ORTHO05D439300 5.7e-07 59.3 37 67.6


User provided reference genes

Program Settings