Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 2114.0 1052 100.0
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1783.8 1056 85.0
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1756.5 1057 83.3
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1729.5 1057 80.8
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1711.0 1057 79.8
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1706.4 1059 80.7
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1702.6 1057 79.7
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1680.2 1056 78.1
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1676.4 1057 79.2
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1672.5 1057 78.4
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1670.2 1056 78.5
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1668.3 1055 78.0
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1660.2 1055 77.5
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1656.7 1059 77.0
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1656.3 1057 77.1
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1653.6 1060 76.9
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1652.1 1055 77.4
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1641.7 1057 77.7
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1641.7 1060 76.7
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1634.0 1057 77.0
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1632.8 1056 76.3
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1625.1 1055 75.9
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1623.6 1057 75.3
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1622.4 1122 72.4
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1619.0 1054 76.6
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1618.6 1141 71.8
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1615.9 1055 76.1
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1609.0 1057 75.6
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1601.6 1062 74.6
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1601.3 1057 75.6
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1600.1 1055 75.3
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1594.3 1076 74.3
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1593.6 1042 76.6
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1592.8 1076 74.2
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1592.4 1056 74.8
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1590.9 1055 75.1
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1589.7 1063 74.5
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1588.2 1062 74.4
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 1579.3 1056 73.6
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1577.0 1147 70.3
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1575.5 1058 74.0
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1570.4 1054 74.2
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1562.7 963 81.2
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1560.8 1056 72.8
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1560.4 1056 73.0
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1556.6 1060 72.1
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1556.2 1058 72.2
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1553.9 1056 72.7
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1553.5 1057 72.0
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1552.0 1060 72.1
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1546.9 1056 73.2
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 1543.5 1057 72.1
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 1541.6 1058 71.9
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1538.9 1064 72.8
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1537.7 1048 72.3
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1534.2 1055 71.3
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1533.9 1043 73.5
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 1529.2 1058 71.1
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1529.2 1058 71.9
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 1528.8 1059 71.3
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1528.5 1058 71.1
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1528.1 1055 71.9
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1525.8 1056 71.2
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1525.8 1059 71.8
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1523.1 1055 72.4
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1521.1 1059 72.3
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1516.1 1059 70.5
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1512.7 1059 72.0
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1510.4 1133 68.0
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1506.9 977 76.5
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1505.7 1055 70.6
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1505.7 1055 71.5
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1493.0 1056 69.5
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1492.6 1056 70.9
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1486.1 1067 71.1
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1484.5 948 78.0
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1482.2 1053 70.0
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1478.8 1061 69.3
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1478.4 1094 68.1
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1474.1 1061 70.3
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1463.4 1058 69.0
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 1462.6 1266 59.8
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1461.0 1063 68.9
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1459.5 1065 68.9
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1450.3 1056 70.0
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1425.6 1064 67.5
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1360.5 803 84.7
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1354.7 867 77.3
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1322.8 1054 63.6
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1320.4 848 76.3
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1307.4 853 75.7
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 0.0e+00 1161.0 791 71.7
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1128.6 789 72.0
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 0.0e+00 1109.7 1081 53.6
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 0.0e+00 1104.4 960 61.0
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 1.9e-307 1059.3 1062 52.6
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 2.5e-294 1015.8 1071 50.9
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 1.9e-278 963.0 783 63.1
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 4.8e-274 948.3 948 56.2
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 3.5e-264 915.6 635 71.8
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 2.1e-245 853.2 661 65.1
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 1.6e-240 837.0 520 75.8
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 2.1e-237 826.6 521 76.8
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 2.1e-216 756.9 696 57.2
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 5.1e-215 752.3 453 77.5
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 1.1e-214 751.1 453 77.5
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 1.5e-214 750.7 474 74.5
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 2.8e-213 746.5 456 77.0
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 3.1e-212 743.0 473 73.6
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 2.7e-208 729.9 453 74.2
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 2.3e-207 726.9 452 75.7
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 1.5e-206 724.2 499 68.9
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 3.3e-206 723.0 447 74.7
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 5.3e-196 689.1 453 72.8
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 1.3e-194 684.5 455 70.8
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 2.5e-190 670.2 483 66.7
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 1.6e-176 624.4 427 72.4
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 4.5e-171 606.3 461 64.0
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 9.4e-169 598.6 399 74.9
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 6.7e-167 592.4 453 64.5
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 8.8e-167 592.0 453 63.8
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 3.2e-161 573.5 366 73.8
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 1.6e-160 571.2 407 69.5
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 4.8e-157 559.7 611 51.4
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 1.1e-156 558.5 366 71.9
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 1.1e-145 521.9 1114 31.7
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 7.0e-124 449.5 270 78.1
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 2.9e-117 427.6 242 85.1
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 3.3e-113 414.1 289 70.2
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 4.7e-112 410.2 271 74.2
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 1.7e-106 391.7 313 64.2
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 3.6e-104 384.0 269 72.9
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 1.7e-101 375.2 219 81.7
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 8.3e-101 372.9 241 73.4
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 1.3e-98 365.5 240 74.6
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 6.9e-71 273.5 209 67.0
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 3.4e-70 271.2 158 78.5
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 1.1e-68 266.2 204 66.7
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 5.1e-66 257.3 286 47.9
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 1.1e-49 203.0 183 65.0
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 7.7e-46 190.3 157 63.7
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 1.2e-43 183.0 156 59.6
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 4.7e-43 181.0 120 67.5
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 1.5e-41 176.0 180 55.6
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 8.2e-40 170.2 109 77.1
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 2.7e-35 155.2 105 73.3
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 1.5e-33 149.4 137 53.3
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 7.5e-33 147.1 96 75.0
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 9.7e-33 146.7 137 53.3
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 1.7e-29 136.0 85 72.9
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 6.5e-29 134.0 83 72.3
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 9.4e-28 130.2 96 64.6
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 2.6e-25 122.1 96 61.5
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 5.0e-21 107.8 78 65.4
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 8.5e-21 107.1 76 67.1
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 1.5e-20 106.3 54 83.3
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 2.0e-17 95.9 69 69.6
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 4.4e-17 94.7 58 70.7
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 2.2e-16 92.4 82 53.7
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 8.3e-16 90.5 74 64.9
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 4.1e-15 88.2 74 60.8
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 2.7e-14 85.5 55 69.1
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 2.9e-13 82.0 77 57.1
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 8.6e-13 80.5 53 75.5
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 1.6e-11 76.3 74 54.1
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 2.6e-09 68.9 41 75.6
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 2.2e-08 65.9 44 72.7
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 6.4e-08 64.3 44 61.4
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 1.1e-07 63.5 48 68.8
AUR62036524 Chenopodium quinoa HOM05D000030 ORTHO05D000009 9.2e-07 60.5 47 61.7
MBI12_g24383_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D004199 2.0e-06 59.3 36 77.8
CDE05G2763 Ceratophyllum demersum HOM05D004198 ORTHO05D130465 3.5e-06 58.5 86 39.5


User provided reference genes

Program Settings