Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p051275 Quercus lobata HOM05D002112 ORTHO05D005830 5.7e-209 730.7 381 100.0
Haze_01451 Corylus avellana HOM05D002112 ORTHO05D005830 6.6e-189 664.1 383 90.9
CiPaw.01G095700 Carya illinoinensis HOM05D002112 ORTHO05D005830 9.8e-185 650.2 382 89.3
Atru.chr4.1269 Acer truncatum HOM05D002112 ORTHO05D005830 9.2e-175 617.1 382 84.6
Lj6g0007258 Lotus japonicus HOM05D002112 ORTHO05D005830 1.1e-172 610.1 382 82.2
Dinv17874 Davidia involucrata HOM05D002112 ORTHO05D005830 1.2e-169 600.1 381 82.4
GSVIVG01010853001 Vitis vinifera HOM05D002112 ORTHO05D005830 7.1e-167 590.9 382 79.3
Duzib151G0469 Durio zibethinus HOM05D002112 ORTHO05D005830 6.6e-165 584.3 382 79.3
Ca_04336_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 3.3e-164 582.0 382 80.1
Manes.04G047300 Manihot esculenta HOM05D002112 ORTHO05D005830 4.3e-164 581.6 383 78.6
Ciclev10020598m.g Citrus clementina HOM05D002112 ORTHO05D005830 5.6e-164 581.3 382 78.8
TAR369G0031 Trochodendron aralioides HOM05D002112 ORTHO05D005830 2.8e-163 578.9 382 77.7
Gohir.A10G139900 Gossypium hirsutum HOM05D002112 ORTHO05D005830 1.1e-162 577.0 382 78.8
Gohir.D10G126900 Gossypium hirsutum HOM05D002112 ORTHO05D005830 1.1e-162 577.0 382 78.8
VMungo0540G0891 Vigna mungo HOM05D002112 ORTHO05D005830 3.1e-162 575.5 382 76.7
Gorai.011G139800 Gossypium raimondii HOM05D002112 ORTHO05D005830 5.2e-162 574.7 382 78.8
Lj2A342T117 Lonicera japonica HOM05D002112 ORTHO05D005830 1.2e-161 573.5 385 78.4
RcHm_v2.0_Chr2g0118821 Rosa chinensis HOM05D002112 ORTHO05D005830 1.2e-161 573.5 383 79.9
Potri.007G131700 Populus trichocarpa HOM05D002112 ORTHO05D005830 2.6e-161 572.4 384 79.9
Sabra17G0000800 Salix brachista HOM05D002112 ORTHO05D005830 2.6e-161 572.4 384 79.2
Sabra17G0015800 Salix brachista HOM05D002112 ORTHO05D005830 3.4e-161 572.0 384 79.2
Actinidia22156 Actinidia chinensis HOM05D002112 ORTHO05D005830 5.8e-161 571.2 383 78.3
Potri.017G026100 Populus trichocarpa HOM05D002112 ORTHO05D005830 9.9e-161 570.5 384 79.2
Thecc.04G174100 Theobroma cacao HOM05D002112 ORTHO05D005830 3.8e-160 568.5 382 77.5
Prupe.1G198700 Prunus persica HOM05D002112 ORTHO05D005830 1.1e-159 567.0 375 80.0
MD04G1045800 Malus domestica HOM05D002112 ORTHO05D005830 3.2e-159 565.5 383 78.3
Sc19g0002800 Simmondsia chinensis HOM05D002112 ORTHO05D005830 5.4e-159 564.7 381 77.7
TWI38G0996 Tripterygium wilfordii HOM05D002112 ORTHO05D005830 4.6e-158 561.6 383 77.8
Glyma.20G048400 Glycine max HOM05D002112 ORTHO05D005830 7.8e-158 560.8 383 76.0
Lalb_Chr17g0347631 Lupinus albus HOM05D002112 ORTHO05D005830 1.0e-157 560.5 384 76.0
Sabra07G0106900 Salix brachista HOM05D002112 ORTHO05D005830 1.0e-157 560.5 384 78.4
Sabra07G0118800 Salix brachista HOM05D002112 ORTHO05D005830 1.0e-157 560.5 384 78.4
Glyma.13G074600 Glycine max HOM05D002112 ORTHO05D005830 1.3e-157 560.1 383 75.7
COL.COLO4_08219 Corchorus olitorius HOM05D002112 ORTHO05D005830 1.7e-157 559.7 382 78.0
CANSAT78G1637 Cannabis sativa HOM05D002112 ORTHO05D005830 5.1e-157 558.1 381 75.9
Actinidia04201 Actinidia chinensis HOM05D002112 ORTHO05D005830 6.6e-157 557.8 415 73.5
vmacro13897 Vaccinium macrocarpon HOM05D002112 ORTHO05D005830 1.5e-156 556.6 386 76.2
Rhsim07G0082300 Rhododendron simsii HOM05D002112 ORTHO05D005830 3.3e-156 555.4 385 75.8
Thhalv10020922m.g Eutrema salsugineum HOM05D002112 ORTHO05D005830 9.6e-156 553.9 382 75.9
FAN26G0200 Fragaria x ananassa HOM05D002112 ORTHO05D005830 6.2e-155 551.2 383 77.5
Phvul.006G021000 Phaseolus vulgaris HOM05D002112 ORTHO05D005830 8.1e-155 550.8 382 74.9
Medtr3g040090 Medicago truncatula HOM05D002112 ORTHO05D005830 1.4e-154 550.1 383 75.2
FvH4_1g23450 Fragaria vesca HOM05D002112 ORTHO05D005830 9.0e-154 547.4 383 77.0
FAN19G2557 Fragaria x ananassa HOM05D002112 ORTHO05D005830 9.0e-154 547.4 383 77.0
DCAR_007772 Daucus carota HOM05D002112 ORTHO05D005830 2.6e-153 545.8 381 75.9
Dinv21066 Davidia involucrata HOM05D002112 ORTHO05D005830 2.6e-153 545.8 385 76.6
Solyc02g082030.3 Solanum lycopersicum HOM05D002112 ORTHO05D005830 2.6e-153 545.8 393 72.8
Sopen02g026670 Solanum pennellii HOM05D002112 ORTHO05D005830 2.6e-153 545.8 393 72.8
FAN23G2661 Fragaria x ananassa HOM05D002112 ORTHO05D005830 5.8e-153 544.7 383 77.0
CARHR095970 Cardamine hirsuta HOM05D002112 ORTHO05D005830 7.6e-153 544.3 384 75.3
HanXRQChr12g0380031 Helianthus annuus HOM05D002112 ORTHO05D005830 7.6e-153 544.3 388 73.7
Sp3g18350 Schrenkiella parvula HOM05D002112 ORTHO05D005830 9.9e-153 543.9 382 74.3
TPR.G11324 Trifolium pratense HOM05D002112 ORTHO05D005830 1.3e-152 543.5 382 74.3
PGSC0003DMG400007324 Solanum tuberosum HOM05D002112 ORTHO05D005830 1.7e-152 543.1 393 72.0
QL11p031638 Quercus lobata HOM05D002112 ORTHO05D005830 2.2e-152 542.7 382 72.8
THA.LOC104817851 Tarenaya hassleriana HOM05D002112 ORTHO05D005830 6.4e-152 541.2 388 75.3
AUR62031652 Chenopodium quinoa HOM05D002112 ORTHO05D005830 8.4e-152 540.8 382 75.1
Nitab4.5_0000632g0010 Nicotiana tabacum HOM05D002112 ORTHO05D005830 1.1e-151 540.4 392 72.7
Lalb_Chr04g0249531 Lupinus albus HOM05D002112 ORTHO05D005830 1.9e-151 539.7 385 74.0
Carub.0003s2027 Capsella rubella HOM05D002112 ORTHO05D005830 2.4e-151 539.3 382 74.1
arahy.Tifrunner.gnm1.ann1.PNXW1P Arachis hypogaea HOM05D002112 ORTHO05D005830 3.2e-151 538.9 390 72.6
Ca_06168_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 3.2e-151 538.9 380 74.7
Ca_06185_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 3.2e-151 538.9 380 74.7
Medtr5g088340 Medicago truncatula HOM05D002112 ORTHO05D005830 3.2e-151 538.9 383 72.8
arahy.Tifrunner.gnm1.ann1.9N9T88 Arachis hypogaea HOM05D002112 ORTHO05D005830 7.1e-151 537.7 390 72.6
MBI14_g20102_MAGBIO Magnolia biondii HOM05D002112 ORTHO05D005830 2.7e-150 535.8 381 70.9
AL3G34040 Arabidopsis lyrata HOM05D002112 ORTHO05D005830 6.0e-150 534.6 382 73.3
BcaC05g28317 Brassica carinata HOM05D002112 ORTHO05D005377 6.0e-150 534.6 378 72.8
Aa31LG8G7130 Aethionema arabicum HOM05D002112 ORTHO05D005830 1.0e-149 533.9 382 74.1
Eucgr.I00215 Eucalyptus grandis HOM05D002112 ORTHO05D005830 1.3e-149 533.5 392 73.5
BolC5t33124H Brassica oleracea HOM05D002112 ORTHO05D005830 1.7e-149 533.1 378 72.8
ECA246G0582 Erigeron canadensis HOM05D002112 ORTHO05D005830 1.7e-149 533.1 326 81.9
C05p44010 Brassica napus HOM05D002112 ORTHO05D005377 3.0e-149 532.3 378 72.8
Peaxi162Scf00036g02120 Petunia axillaris HOM05D002112 ORTHO05D005830 3.0e-149 532.3 390 72.3
A05p28600 Brassica napus HOM05D002112 ORTHO05D005377 8.7e-149 530.8 378 72.5
BraA05t21737Z Brassica rapa HOM05D002112 ORTHO05D005377 8.7e-149 530.8 378 72.5
HanXRQChr02g0033051 Helianthus annuus HOM05D002112 ORTHO05D005830 3.3e-148 528.9 358 75.1
Cc09_g04780 Coffea canephora HOM05D002112 ORTHO05D005830 7.3e-148 527.7 390 73.1
Psat2g021160 Pisum sativum HOM05D002112 ORTHO05D005830 4.8e-147 525.0 382 70.9
PSO339G3553 Papaver somniferum HOM05D002112 ORTHO05D005830 1.8e-146 523.1 391 70.3
Nn2g10363 Nelumbo nucifera HOM05D002112 ORTHO05D005830 2.4e-146 522.7 349 75.4
MELO3C015704.2 Cucumis melo HOM05D002112 ORTHO05D005830 5.3e-146 521.5 383 72.6
CAN.G809.29 Capsicum annuum HOM05D002112 ORTHO05D005830 7.6e-145 517.7 400 67.2
Migut.M02025 Erythranthe guttata HOM05D002112 ORTHO05D005830 1.7e-144 516.5 387 71.1
BolC1t04335H Brassica oleracea HOM05D002112 ORTHO05D005377 5.4e-143 511.5 369 72.6
Aqoxy7G04120 Aquilegia oxysepala HOM05D002112 ORTHO05D005830 9.3e-143 510.8 386 68.9
BcaB04g20660 Brassica carinata HOM05D002112 ORTHO05D005830 1.6e-142 510.0 367 72.8
CiPaw.06G167000 Carya illinoinensis HOM05D002112 ORTHO05D005830 6.0e-142 508.1 382 70.4
BcaC09g48987 Brassica carinata HOM05D002112 ORTHO05D005377 3.0e-141 505.8 366 72.1
C01p43770 Brassica napus HOM05D002112 ORTHO05D005830 1.5e-140 503.4 366 71.3
Phvul.008G205800 Phaseolus vulgaris HOM05D002112 ORTHO05D005830 9.6e-140 500.7 384 70.1
SalBow5G0693 Salvia bowleyana HOM05D002112 ORTHO05D005830 2.8e-139 499.2 385 69.6
Glyma.14G040300 Glycine max HOM05D002112 ORTHO05D005830 3.7e-139 498.8 384 66.9
VMungo0647G1998 Vigna mungo HOM05D002112 ORTHO05D005830 2.4e-138 496.1 381 69.6
Nitab4.5_0003902g0080 Nicotiana tabacum HOM05D002112 ORTHO05D005830 5.8e-137 491.5 340 73.2
Peaxi162Scf00276g01115 Petunia axillaris HOM05D002112 ORTHO05D005830 5.8e-137 491.5 433 63.5
ATR0559G336 Amborella trichopoda HOM05D002112 ORTHO05D005830 1.7e-136 490.0 374 69.0
Duzib212G0454 Durio zibethinus HOM05D002112 ORTHO05D005830 8.4e-136 487.6 382 68.8
unitig_748.g7486 Utricularia gibba HOM05D002112 ORTHO05D005830 1.4e-135 486.9 354 70.6
EL10Ac2g03438 Beta vulgaris HOM05D002112 ORTHO05D005830 1.9e-135 486.5 382 69.1
SGA_v2.0_scaffold16G07839 Striga asiatica HOM05D002112 ORTHO05D005830 2.3e-133 479.6 493 55.8
Haze_10243 Corylus avellana HOM05D002112 ORTHO05D005830 3.9e-133 478.8 381 68.8
ClCG09G018870 Citrullus lanatus HOM05D002112 ORTHO05D005830 1.5e-132 476.9 463 60.0
DCAR_003742 Daucus carota HOM05D002112 ORTHO05D005830 4.3e-132 475.3 354 72.3
Gohir.A02G114100 Gossypium hirsutum HOM05D002112 ORTHO05D005830 4.0e-130 468.8 322 75.5
Ah.14g085620 Amaranthus hybridus HOM05D002112 ORTHO05D005830 3.4e-129 465.7 385 67.5
BraA01t03533Z Brassica rapa HOM05D002112 ORTHO05D005830 3.2e-127 459.1 369 68.3
Hma1.2p1_2907F.1_g330140 Hydrangea macrophylla HOM05D002112 ORTHO05D005830 7.1e-127 458.0 337 72.4
Lsat_1_v5_gn_3_102740 Lactuca sativa HOM05D002112 ORTHO05D005830 3.5e-126 455.7 379 67.3
CDE08G1601 Ceratophyllum demersum HOM05D002112 ORTHO05D005830 7.9e-126 454.5 382 62.0
Zm00001eb362140 Zea mays HOM05D002112 ORTHO05D005830 7.4e-124 448.0 376 62.0
Os01g0974000 Oryza sativa ssp. japonica HOM05D002112 ORTHO05D005830 1.2e-118 430.6 306 69.0
vmacro12410 Vaccinium macrocarpon HOM05D002112 ORTHO05D005830 1.6e-118 430.3 270 83.3
Gohir.A08G075500 Gossypium hirsutum HOM05D002112 ORTHO05D005830 1.4e-117 427.2 283 77.0
BcaB06g26098 Brassica carinata HOM05D002112 ORTHO05D005377 2.0e-116 423.3 321 68.8
SEGI_07155 Sequoiadendron giganteum HOM05D002112 ORTHO05D005830 2.0e-116 423.3 333 62.5
ClCG02G003310 Citrullus lanatus HOM05D002112 ORTHO05D005830 3.4e-113 412.5 307 72.6
CsaV3_7G002030 Cucumis sativus L. HOM05D002112 ORTHO05D005830 8.5e-112 407.9 286 74.8
PSO151G0006 Papaver somniferum HOM05D002112 ORTHO05D005830 3.2e-111 406.0 392 59.2
Sed0017575 Sechium edule HOM05D002112 ORTHO05D005830 3.6e-110 402.5 284 73.9
Lj1A1151T82 Lonicera japonica HOM05D002112 ORTHO05D005830 5.3e-106 388.7 286 68.5
Oeu010462.1 Olea europaea HOM05D002112 ORTHO05D005830 5.9e-105 385.2 290 71.4
MD13G1257900 Malus domestica HOM05D002112 ORTHO05D005830 1.3e-104 384.0 294 70.7
HPP92_018143 Vanilla planifolia HOM05D002112 ORTHO05D005830 2.9e-104 382.9 372 54.3
AT3G20320 Arabidopsis thaliana HOM05D002112 ORTHO05D005830 6.5e-104 381.7 283 70.3
Psat5g187680 Pisum sativum HOM05D002112 ORTHO05D005830 6.5e-104 381.7 282 72.0
Cfa004646 Carpinus fangiana HOM05D002112 ORTHO05D005830 1.4e-101 374.0 321 63.2
MSTRG.24953 Avicennia marina HOM05D002112 ORTHO05D005830 2.3e-101 373.2 273 71.4
Mapoly0038s0049 Marchantia polymorpha HOM05D002112 ORTHO05D005830 6.7e-101 371.7 327 53.8
A01p34360 Brassica napus HOM05D002112 ORTHO05D005830 3.1e-98 362.8 271 69.7
SMO356G0377 Selaginella moellendorffii HOM05D002112 ORTHO05D005830 4.1e-98 362.5 306 56.9
Pp3c12_4060 Physcomitrium patens HOM05D002112 ORTHO05D005830 2.2e-96 356.7 327 52.3
Pp3c3_12480 Physcomitrium patens HOM05D002112 ORTHO05D005830 3.8e-96 355.9 338 52.7
CBR_g24153 Chara braunii HOM05D002112 ORTHO05D005830 2.1e-94 350.1 309 54.4
Hund03181 Selenicereus undatus HOM05D002112 ORTHO05D005830 8.0e-94 348.2 275 67.6
AagrBONN_evm.TU.Sc2ySwM_362.2463 Anthoceros agrestis HOM05D002112 ORTHO05D005830 1.4e-93 347.4 342 52.6
SHI29120 Sapria himalayana HOM05D002112 ORTHO05D005830 3.7e-91 339.3 373 51.2
Zm00001eb139760 Zea mays HOM05D002112 ORTHO05D005830 9.1e-90 334.7 240 66.7
TAR623G0168 Trochodendron aralioides HOM05D002112 ORTHO05D005830 2.2e-88 330.1 235 72.8
Peaxi162Scf00580g00069 Petunia axillaris HOM05D002112 ORTHO05D005830 2.4e-82 310.1 227 70.0
QL02p069440 Quercus lobata HOM05D002112 ORTHO05D005830 4.0e-77 292.7 212 67.9
MCO07G431 Micromonas commoda HOM05D002112 ORTHO05D005830 2.2e-75 287.0 307 47.6
PRCOL_00002736 Prasinoderma coloniale HOM05D002112 ORTHO05D005830 3.9e-64 249.6 302 43.7
Cre16.g694400 Chlamydomonas reinhardtii HOM05D002112 ORTHO05D005830 1.1e-63 248.1 300 43.0
Sc07g0004100 Simmondsia chinensis HOM05D002112 ORTHO05D005830 2.8e-54 216.9 173 68.2
Glyma.02G275800 Glycine max HOM05D002112 ORTHO05D005830 7.1e-50 202.2 175 61.1
Cpa.g.c39485 Carica papaya HOM05D002112 ORTHO05D005830 4.6e-49 199.5 127 78.7
TAR623G1172 Trochodendron aralioides HOM05D002112 ORTHO05D005830 6.0e-49 199.1 128 82.0
Oeu010464.1 Olea europaea HOM05D002112 ORTHO05D005830 3.5e-41 173.3 103 88.3
Oeu037772.1 Olea europaea HOM05D002112 ORTHO05D005830 3.9e-40 169.9 102 87.3
Lj1A1151T83 Lonicera japonica HOM05D002112 ORTHO05D005830 1.1e-39 168.3 96 91.7
FAN28G2322 Fragaria x ananassa HOM05D002112 ORTHO05D005830 5.6e-39 166.0 102 84.3
AUR62038882 Chenopodium quinoa HOM05D002112 ORTHO05D005830 2.1e-38 164.1 96 88.5
Gohir.A08G072300 Gossypium hirsutum HOM05D002112 ORTHO05D010805 2.5e-31 140.6 102 70.6
MD13G1258100 Malus domestica HOM05D002112 ORTHO05D005830 7.6e-28 129.0 77 85.7
A01p34370 Brassica napus HOM05D000233 ORTHO05D000020 1.0e-19 102.1 59 83.1
Peaxi162Scf00036g02121 Petunia axillaris HOM05D002112 ORTHO05D005830 2.2e-19 100.9 60 85.0
Sc07g0004110 Simmondsia chinensis HOM05D002112 ORTHO05D010805 3.3e-15 87.0 51 80.4
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 8.2e-14 82.4 69 60.9
Cre09.g395028 Chlamydomonas reinhardtii HOM05D002112 ORTHO05D143200 1.0e-11 75.5 105 39.0
Hma1.2p1_1220F.1_g268110 Hydrangea macrophylla HOM05D002112 ORTHO05D005830 4.6e-09 66.6 42 78.6
Hma1.2p1_1220F.1_g268115 Hydrangea macrophylla HOM05D002112 ORTHO05D005830 4.6e-09 66.6 42 78.6
Hma1.2p1_2907F.1_g330145 Hydrangea macrophylla HOM05D002112 ORTHO05D005830 4.6e-09 66.6 42 78.6
SEGI_04192 Sequoiadendron giganteum HOM05D002112 ORTHO05D384887 3.0e-08 63.9 62 56.5


User provided reference genes

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