Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p045758 Quercus lobata HOM05D004494 ORTHO05D005493 5.9e-41 170.2 76 100.0
QL10p046170 Quercus lobata HOM05D004494 ORTHO05D005493 1.6e-30 135.6 122 57.4
QL09p054324 Quercus lobata HOM05D004494 ORTHO05D005493 4.4e-20 100.9 45 97.8
PGR083G0484 Punica granatum HOM05D004494 ORTHO05D005493 1.7e-19 99.0 48 87.5
ClCG01G014780 Citrullus lanatus HOM05D004494 ORTHO05D005493 6.4e-19 97.1 73 61.6
arahy.Tifrunner.gnm1.ann1.UPEY1W Arachis hypogaea HOM05D004494 ORTHO05D005493 8.3e-19 96.7 48 87.5
CiPaw.16G074500 Carya illinoinensis HOM05D004494 ORTHO05D005493 8.3e-19 96.7 48 87.5
Ciclev10017429m.g Citrus clementina HOM05D004494 ORTHO05D005493 8.3e-19 96.7 48 87.5
Glyma.09G164200 Glycine max HOM05D004494 ORTHO05D005493 8.3e-19 96.7 48 87.5
Glyma.16G212700 Glycine max HOM05D004494 ORTHO05D005493 8.3e-19 96.7 48 87.5
Lj2g0023891 Lotus japonicus HOM05D004494 ORTHO05D005493 8.3e-19 96.7 48 87.5
Lalb_Chr08g0237121 Lupinus albus HOM05D004494 ORTHO05D005493 8.3e-19 96.7 48 87.5
Manes.10G081901 Manihot esculenta HOM05D004494 ORTHO05D005493 8.3e-19 96.7 48 87.5
Phvul.004G138700 Phaseolus vulgaris HOM05D004494 ORTHO05D005493 8.3e-19 96.7 48 87.5
Potri.011G144800 Populus trichocarpa HOM05D004494 ORTHO05D005493 8.3e-19 96.7 48 87.5
Sed0027035 Sechium edule HOM05D004494 ORTHO05D005493 1.1e-18 96.3 48 85.4
CANSAT11G2181 Cannabis sativa HOM05D004494 ORTHO05D005493 1.9e-18 95.5 46 89.1
PSO673G0024 Papaver somniferum HOM05D004494 ORTHO05D005493 1.9e-18 95.5 48 85.4
Sed0010347 Sechium edule HOM05D004494 ORTHO05D005493 1.9e-18 95.5 48 85.4
AUR62038701 Chenopodium quinoa HOM05D004494 ORTHO05D005493 2.4e-18 95.1 57 73.7
Lj2g0005437 Lotus japonicus HOM05D004494 ORTHO05D005493 2.4e-18 95.1 44 93.2
Nn4g25134 Nelumbo nucifera HOM05D004494 ORTHO05D005493 2.4e-18 95.1 44 93.2
SalBow1G8446 Salvia bowleyana HOM05D004494 ORTHO05D005493 2.4e-18 95.1 44 93.2
SalBow3G4220 Salvia bowleyana HOM05D004494 ORTHO05D005493 2.4e-18 95.1 44 93.2
SalBow6G4049 Salvia bowleyana HOM05D004494 ORTHO05D005493 2.4e-18 95.1 44 93.2
EL10Ac5g11725 Beta vulgaris HOM05D004494 ORTHO05D005493 3.2e-18 94.7 48 85.4
CSS0001708 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 3.2e-18 94.7 48 85.4
CSS0021691 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 3.2e-18 94.7 48 85.4
CSS0025595 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 3.2e-18 94.7 48 85.4
CSS0034931 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 3.2e-18 94.7 48 85.4
Hma1.2p1_0854F.1_g228840 Hydrangea macrophylla HOM05D004494 ORTHO05D005493 3.2e-18 94.7 48 85.4
MBI06_g27491_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 3.2e-18 94.7 45 91.1
GSVIVG01035228001 Vitis vinifera HOM05D004494 ORTHO05D005493 3.2e-18 94.7 48 85.4
PSO782G1294 Papaver somniferum HOM05D004494 ORTHO05D005493 4.1e-18 94.4 48 83.3
Hund10311 Selenicereus undatus HOM05D004494 ORTHO05D005493 5.4e-18 94.0 45 88.9
MELO3C002173.2 Cucumis melo HOM05D004494 ORTHO05D005493 7.1e-18 93.6 48 85.4
MELO3C008157.2 Cucumis melo HOM05D004494 ORTHO05D005493 7.1e-18 93.6 48 85.4
CsaV3_1G007550 Cucumis sativus L. HOM05D004494 ORTHO05D005493 7.1e-18 93.6 48 85.4
TPR.G34872 Trifolium pratense HOM05D004494 ORTHO05D005493 7.1e-18 93.6 48 83.3
Ah.06g192750 Amaranthus hybridus HOM05D006004 ORTHO05D006976 9.2e-18 93.2 44 90.9
Oeu012705.2 Olea europaea HOM05D004494 ORTHO05D005493 9.2e-18 93.2 44 90.9
Oeu058437.1 Olea europaea HOM05D004494 ORTHO05D005493 9.2e-18 93.2 44 90.9
Hund02298 Selenicereus undatus HOM05D004494 ORTHO05D005493 9.2e-18 93.2 44 90.9
GSVIVG01012569001 Vitis vinifera HOM05D004494 ORTHO05D005493 9.2e-18 93.2 44 90.9
vmacro09451 Vaccinium macrocarpon HOM05D004494 ORTHO05D005493 1.6e-17 92.4 48 83.3
Aa31LG10G1570 Aethionema arabicum HOM05D004494 ORTHO05D005493 2.1e-17 92.0 58 69.0
arahy.Tifrunner.gnm1.ann1.IHMM71 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.1e-17 92.0 44 90.9
arahy.Tifrunner.gnm1.ann1.QX7YV8 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.1e-17 92.0 44 90.9
Haze_25494 Corylus avellana HOM05D004494 ORTHO05D005493 2.1e-17 92.0 45 86.7
DCAR_021072 Daucus carota HOM05D004494 ORTHO05D005493 2.1e-17 92.0 44 90.9
Pp3c24_13920 Physcomitrium patens HOM05D004494 ORTHO05D005493 2.1e-17 92.0 46 84.8
arahy.Tifrunner.gnm1.ann1.93HXT6 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.7e-17 91.7 52 78.8
Migut.H02056 Erythranthe guttata HOM05D004494 ORTHO05D005493 2.7e-17 91.7 48 83.3
AT5G41010 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 3.5e-17 91.3 48 81.2
Cpa.g.sc25.208 Carica papaya HOM05D004494 ORTHO05D005493 3.5e-17 91.3 44 88.6
Thhalv10011934m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 3.5e-17 91.3 48 81.2
THA.LOC104822608 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 3.5e-17 91.3 48 83.3
TWI81G0978 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 3.5e-17 91.3 48 83.3
Duzib192G0124 Durio zibethinus HOM05D004494 ORTHO05D005493 4.6e-17 90.9 48 83.3
Duzib235G0349 Durio zibethinus HOM05D004494 ORTHO05D005493 4.6e-17 90.9 48 83.3
Migut.M00671 Erythranthe guttata HOM05D004494 ORTHO05D005493 4.6e-17 90.9 45 86.7
Gohir.A06G195100 Gossypium hirsutum HOM05D004494 ORTHO05D005493 4.6e-17 90.9 48 83.3
Gohir.D06G202700 Gossypium hirsutum HOM05D004494 ORTHO05D005493 4.6e-17 90.9 48 83.3
Gohir.D11G001400 Gossypium hirsutum HOM05D004494 ORTHO05D005493 4.6e-17 90.9 48 83.3
Gorai.007G002300 Gossypium raimondii HOM05D004494 ORTHO05D005493 4.6e-17 90.9 48 83.3
Gorai.010G236600 Gossypium raimondii HOM05D004494 ORTHO05D005493 4.6e-17 90.9 48 83.3
HanXRQChr09g0257491 Helianthus annuus HOM05D004494 ORTHO05D005493 4.6e-17 90.9 48 83.3
HanXRQChr15g0468731 Helianthus annuus HOM05D004494 ORTHO05D005493 4.6e-17 90.9 48 83.3
Oeu059243.2 Olea europaea HOM05D004494 ORTHO05D005493 4.6e-17 90.9 44 88.6
Thecc.06G057100 Theobroma cacao HOM05D004494 ORTHO05D005493 4.6e-17 90.9 48 83.3
Aqoxy5G00339 Aquilegia oxysepala HOM05D004494 ORTHO05D005493 6.0e-17 90.5 48 83.3
Thhalv10028022m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 6.0e-17 90.5 48 81.2
THA.LOC104810404 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 7.8e-17 90.1 48 83.3
Carub.0007s3448 Capsella rubella HOM05D004494 ORTHO05D005493 1.0e-16 89.7 49 81.6
CARHR043990 Cardamine hirsuta HOM05D004494 ORTHO05D005493 1.0e-16 89.7 48 81.2
CARHR213360 Cardamine hirsuta HOM05D004494 ORTHO05D005493 1.0e-16 89.7 48 81.2
Psat3g135240 Pisum sativum HOM05D004494 ORTHO05D005493 1.0e-16 89.7 48 79.2
CiPaw.06G022300 Carya illinoinensis HOM05D004494 ORTHO05D005493 1.3e-16 89.4 48 83.3
COL.COLO4_31155 Corchorus olitorius HOM05D004494 ORTHO05D005493 1.3e-16 89.4 44 88.6
Lsat_1_v5_gn_9_103341 Lactuca sativa HOM05D000133 ORTHO05D005913 1.3e-16 89.4 44 88.6
Mapoly0066s0049 Marchantia polymorpha HOM05D004494 ORTHO05D005493 1.3e-16 89.4 45 84.4
Medtr7g066240 Medicago truncatula HOM05D004494 ORTHO05D005493 1.3e-16 89.4 48 79.2
arahy.Tifrunner.gnm1.ann1.I96U63 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.7e-16 89.0 44 88.6
Os01g0530366 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 1.7e-16 89.0 49 81.6
Gohir.A11G001800 Gossypium hirsutum HOM05D004494 ORTHO05D005493 2.3e-16 88.6 48 81.2
PSO421G0336 Papaver somniferum HOM05D004494 ORTHO05D005493 2.3e-16 88.6 45 84.4
PSO421G0392 Papaver somniferum HOM05D004494 ORTHO05D005493 2.3e-16 88.6 45 84.4
AL7G48542 Arabidopsis lyrata HOM05D004494 ORTHO05D005493 3.0e-16 88.2 49 79.6
BcaB04g17064 Brassica carinata HOM05D004494 ORTHO05D005493 3.0e-16 88.2 48 79.2
BcaB07g33308 Brassica carinata HOM05D004494 ORTHO05D005493 3.0e-16 88.2 48 79.2
BcaC01g01406 Brassica carinata HOM05D004494 ORTHO05D005493 3.0e-16 88.2 48 79.2
BcaC08g43550 Brassica carinata HOM05D004494 ORTHO05D005493 3.0e-16 88.2 48 79.2
A06p00840 Brassica napus HOM05D004494 ORTHO05D005493 3.0e-16 88.2 48 79.2
C06p09480 Brassica napus HOM05D004494 ORTHO05D005493 3.0e-16 88.2 48 79.2
BraA08t32198Z Brassica rapa HOM05D004494 ORTHO05D005493 3.0e-16 88.2 48 79.2
BraSC277t45950Z Brassica rapa HOM05D004494 ORTHO05D005493 3.0e-16 88.2 48 79.2
Sp1g40220 Schrenkiella parvula HOM05D004494 ORTHO05D005493 3.0e-16 88.2 48 79.2
Sp7g00900 Schrenkiella parvula HOM05D004494 ORTHO05D005493 3.0e-16 88.2 48 79.2
TWI36G0745 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 3.0e-16 88.2 48 81.2
Ca_07598_v3 Cicer arietinum L. HOM05D004494 ORTHO05D005493 3.9e-16 87.8 48 75.0
arahy.Tifrunner.gnm1.ann1.WE4FU2 Arachis hypogaea HOM05D004494 ORTHO05D005493 5.1e-16 87.4 44 86.4
CAN.G904.11 Capsicum annuum HOM05D004494 ORTHO05D005493 5.1e-16 87.4 45 84.4
Prupe.4G246000 Prunus persica HOM05D004494 ORTHO05D005493 5.1e-16 87.4 48 81.2
Prupe.5G244400 Prunus persica HOM05D004494 ORTHO05D005493 5.1e-16 87.4 48 81.2
Solyc10g007650.3 Solanum lycopersicum HOM05D004494 ORTHO05D005493 5.1e-16 87.4 45 84.4
PGSC0003DMG400021289 Solanum tuberosum HOM05D004494 ORTHO05D005493 5.1e-16 87.4 45 84.4
PSO063G6745 Papaver somniferum HOM05D004494 ORTHO05D005493 6.6e-16 87.0 51 78.4
A05p17960 Brassica napus HOM05D004494 ORTHO05D005493 1.1e-15 86.3 44 84.1
A08p01450 Brassica napus HOM05D004494 ORTHO05D005493 1.1e-15 86.3 44 84.1
C03p91710 Brassica napus HOM05D004494 ORTHO05D005493 1.1e-15 86.3 44 84.1
BolC3t21490H Brassica oleracea HOM05D004494 ORTHO05D005493 1.1e-15 86.3 44 84.1
BraA05t20689Z Brassica rapa HOM05D004494 ORTHO05D005493 1.1e-15 86.3 44 84.1
Nitab4.5_0000923g0150 Nicotiana tabacum HOM05D004494 ORTHO05D005493 1.1e-15 86.3 41 90.2
Nitab4.5_0002209g0130 Nicotiana tabacum HOM05D004494 ORTHO05D005493 1.1e-15 86.3 41 90.2
GSVIVG01012570001 Vitis vinifera HOM05D004494 ORTHO05D005493 1.5e-15 85.9 40 90.0
SMO145G0179 Selaginella moellendorffii HOM05D004494 ORTHO05D005493 2.5e-15 85.1 46 78.3
SEGI_39556 Sequoiadendron giganteum HOM05D004494 ORTHO05D005493 3.3e-15 84.7 50 80.0
GSVIVG01012562001 Vitis vinifera HOM05D004494 ORTHO05D005493 3.3e-15 84.7 48 79.2
arahy.Tifrunner.gnm1.ann1.DLM5V3 Arachis hypogaea HOM05D004494 ORTHO05D005493 7.3e-15 83.6 48 75.0
arahy.Tifrunner.gnm1.ann1.YVY1FB Arachis hypogaea HOM05D004494 ORTHO05D005493 7.3e-15 83.6 43 83.7
BcaC05g27278 Brassica carinata HOM05D004494 ORTHO05D005493 7.3e-15 83.6 44 81.8
FvH4_5g18480 Fragaria vesca HOM05D004494 ORTHO05D005493 9.5e-15 83.2 46 80.4
MD12G1077100 Malus domestica HOM05D004494 ORTHO05D005493 9.5e-15 83.2 46 80.4
MD14G1071000 Malus domestica HOM05D004494 ORTHO05D005493 9.5e-15 83.2 46 80.4
RcHm_v2.0_Chr7g0177031 Rosa chinensis HOM05D004494 ORTHO05D005493 1.6e-14 82.4 50 78.0
BolC8t52568H Brassica oleracea HOM05D004494 ORTHO05D005493 2.1e-14 82.0 42 83.3
FAN08G0913 Fragaria x ananassa HOM05D004494 ORTHO05D005493 2.8e-14 81.6 42 85.7
FAN18G1159 Fragaria x ananassa HOM05D004494 ORTHO05D005493 2.8e-14 81.6 42 85.7
MBI16_g26393_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 6.2e-14 80.5 52 67.3
Aa31LG1G19660 Aethionema arabicum HOM05D004494 ORTHO05D005493 1.8e-13 79.0 39 79.5
Aa31LG8G1870 Aethionema arabicum HOM05D004494 ORTHO05D005493 1.8e-13 79.0 39 79.5
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 1.8e-13 79.0 41 80.5
arahy.Tifrunner.gnm1.ann1.S5KS5D Arachis hypogaea HOM05D004494 ORTHO05D005493 2.4e-13 78.6 45 80.0
C06p15220 Brassica napus HOM05D004494 ORTHO05D005493 3.1e-13 78.2 44 79.5
BolC6t36697H Brassica oleracea HOM05D004494 ORTHO05D005493 3.1e-13 78.2 44 79.5
Peaxi162Scf00111g00531 Petunia axillaris HOM05D004494 ORTHO05D005493 3.1e-13 78.2 67 58.2
Aa31LG1G19360 Aethionema arabicum HOM05D004494 ORTHO05D005493 6.8e-13 77.0 39 76.9
Cre07.g342352 Chlamydomonas reinhardtii HOM05D004494 ORTHO05D005493 7.6e-12 73.6 41 75.6
Mapoly0119s0017 Marchantia polymorpha HOM05D004494 ORTHO05D005493 1.7e-11 72.4 46 69.6
PRCOL_00006868 Prasinoderma coloniale HOM05D004494 ORTHO05D005493 1.7e-11 72.4 39 76.9
MD14G1070900 Malus domestica HOM05D004494 ORTHO05D005493 2.2e-11 72.0 44 68.2
Prupe.4G215400 Prunus persica HOM05D004494 ORTHO05D005493 6.4e-11 70.5 46 65.2
Rhsim04G0032100 Rhododendron simsii HOM05D004494 ORTHO05D005493 6.4e-11 70.5 33 90.9
AT1G53690 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 2.4e-10 68.6 47 66.0
C05p31860 Brassica napus HOM05D004494 ORTHO05D005493 2.4e-10 68.6 60 58.3
Os07g0105100 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 1.2e-09 66.2 49 61.2
Carub.0001s4296 Capsella rubella HOM05D004494 ORTHO05D005493 3.5e-09 64.7 38 68.4
Aa31LG1G19670 Aethionema arabicum HOM05D000171 ORTHO05D000101 1.3e-08 62.8 31 80.6
BolC5t31914H Brassica oleracea HOM05D004494 ORTHO05D005493 1.3e-08 62.8 31 87.1
BcaC08g44099 Brassica carinata HOM05D004494 ORTHO05D005493 3.9e-08 61.2 35 77.1
C08p50400 Brassica napus HOM05D004494 ORTHO05D005493 3.9e-08 61.2 32 78.1
Haze_27787 Corylus avellana HOM05D004494 ORTHO05D005493 8.7e-08 60.1 35 65.7
FvH4_3g22950 Fragaria vesca HOM05D004494 ORTHO05D005493 9.6e-07 56.6 48 52.1
FAN21G1244 Fragaria x ananassa HOM05D004494 ORTHO05D005493 9.6e-07 56.6 48 52.1
arahy.Tifrunner.gnm1.ann1.VGS9ID Arachis hypogaea HOM05D004494 ORTHO05D005493 1.6e-06 55.8 37 62.2
RcHm_v2.0_Chr5g0040221 Rosa chinensis HOM05D004494 ORTHO05D005493 1.6e-06 55.8 48 52.1
FAN11G3063 Fragaria x ananassa HOM05D004494 ORTHO05D005493 2.1e-06 55.5 44 54.5
FAN16G2751 Fragaria x ananassa HOM05D004494 ORTHO05D005493 4.7e-06 54.3 39 56.4
arahy.Tifrunner.gnm1.ann1.H77AQF Arachis hypogaea HOM05D004494 ORTHO05D005493 6.2e-06 53.9 24 95.8


User provided reference genes

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