Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1485.7 747 100.0
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1479.2 747 99.7
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 0.0e+00 1275.4 749 87.2
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 0.0e+00 1267.7 750 86.9
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 0.0e+00 1235.7 747 84.6
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1224.5 761 82.5
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1218.0 742 84.5
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1216.4 747 83.1
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1209.5 756 83.1
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 0.0e+00 1205.3 750 82.3
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 0.0e+00 1204.9 755 83.0
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1204.9 743 83.0
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 0.0e+00 1202.6 754 83.3
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 0.0e+00 1198.3 748 82.8
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 0.0e+00 1197.6 739 82.5
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 0.0e+00 1192.6 732 83.9
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 0.0e+00 1192.6 743 83.2
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 0.0e+00 1189.5 679 88.4
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 0.0e+00 1188.7 752 81.9
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1186.8 721 84.9
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 0.0e+00 1186.8 749 81.7
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1184.1 743 82.9
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1182.9 752 82.3
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1181.0 772 79.4
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 0.0e+00 1178.3 746 80.7
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 0.0e+00 1174.8 727 82.4
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1173.7 772 78.9
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 0.0e+00 1173.3 745 80.9
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 0.0e+00 1169.1 749 80.1
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 0.0e+00 1165.2 750 80.7
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 0.0e+00 1160.2 752 80.2
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1158.3 749 80.4
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1157.9 752 79.4
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1157.9 750 80.0
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 0.0e+00 1156.0 673 86.0
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 0.0e+00 1155.6 753 79.3
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 0.0e+00 1155.2 727 81.6
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 0.0e+00 1154.8 713 81.8
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 0.0e+00 1153.7 744 80.4
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 0.0e+00 1153.3 751 79.1
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 0.0e+00 1149.8 743 79.5
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 0.0e+00 1149.0 750 78.7
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 0.0e+00 1148.3 725 80.8
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 0.0e+00 1147.5 746 78.8
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1146.3 771 77.4
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 0.0e+00 1146.3 726 81.1
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 0.0e+00 1138.3 726 80.2
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 0.0e+00 1138.3 720 81.5
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 0.0e+00 1133.6 727 80.7
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 0.0e+00 1132.9 750 79.7
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 0.0e+00 1130.9 734 78.3
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 0.0e+00 1130.9 942 65.9
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 0.0e+00 1129.8 731 78.7
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 0.0e+00 1129.0 673 84.0
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1124.8 801 73.8
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1124.8 801 73.8
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 0.0e+00 1118.6 836 72.0
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 0.0e+00 1117.1 745 78.0
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 0.0e+00 1117.1 769 78.0
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 0.0e+00 1113.2 755 75.5
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 0.0e+00 1112.1 744 78.4
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 0.0e+00 1108.6 739 77.7
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 0.0e+00 1106.7 742 77.4
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1104.7 744 77.2
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 0.0e+00 1104.4 741 77.5
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 0.0e+00 1100.5 745 76.4
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 0.0e+00 1097.0 722 78.4
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 0.0e+00 1096.3 714 79.0
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1095.5 658 83.3
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 0.0e+00 1093.2 675 80.6
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1092.4 698 79.8
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1092.4 698 79.8
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 0.0e+00 1090.9 667 79.9
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 0.0e+00 1085.9 676 81.4
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 0.0e+00 1085.5 798 72.1
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 0.0e+00 1084.7 734 77.1
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 0.0e+00 1082.4 682 78.3
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 0.0e+00 1081.6 737 77.5
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1078.2 772 74.1
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 0.0e+00 1077.0 808 71.9
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 0.0e+00 1075.5 695 79.7
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 3.3e-309 1064.7 745 74.8
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 2.1e-303 1045.4 678 79.8
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 4.0e-291 1004.6 710 72.0
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 2.3e-286 988.8 658 73.7
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 1.1e-285 986.5 589 84.0
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 5.8e-282 974.2 589 85.6
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 1.5e-277 959.5 681 70.6
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 1.2e-271 939.9 530 88.7
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 2.1e-271 939.1 525 88.6
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 1.8e-270 936.0 672 72.2
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 6.7e-270 934.1 527 87.5
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 1.1e-269 933.3 531 85.5
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 4.0e-267 924.9 562 84.2
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 1.3e-265 919.8 554 83.8
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 7.9e-263 910.6 622 71.9
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 3.7e-260 901.7 616 76.3
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 3.1e-259 898.7 604 75.8
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 1.2e-255 886.7 662 67.2
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 1.3e-244 850.1 662 65.0
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 1.3e-236 823.5 510 83.7
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 2.5e-232 809.3 526 79.8
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 1.0e-225 787.3 504 79.6
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 1.0e-222 777.3 632 62.8
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 2.1e-199 699.9 413 85.2
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 1.3e-188 664.1 407 79.6
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 4.6e-186 655.6 402 79.9
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 1.4e-182 644.0 352 88.6
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 1.7e-177 627.1 401 78.6
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 1.8e-153 547.4 373 76.4
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 2.7e-146 523.5 447 64.2
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 2.3e-129 467.2 621 42.5
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 6.5e-124 449.1 659 39.5
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 2.3e-121 440.7 373 65.1
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 7.5e-112 409.1 369 60.2
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 2.5e-107 394.0 678 37.9
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 5.9e-101 372.9 505 42.8
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 6.6e-100 369.4 228 83.8
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 3.6e-98 363.6 329 59.9
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 6.2e-82 309.7 169 90.5
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 6.8e-73 279.6 161 85.7
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 7.3e-59 233.0 162 67.9
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 6.2e-58 229.9 212 58.0
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 3.1e-57 227.6 144 80.6
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 5.3e-49 200.3 114 88.6
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 1.2e-48 199.1 254 49.2
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 2.5e-38 164.9 202 45.5
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 6.7e-36 156.8 125 64.0
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 8.7e-36 156.4 139 61.9
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 1.5e-35 155.6 112 67.0
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 1.9e-35 155.2 283 38.5
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 4.3e-35 154.1 93 86.0
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 2.8e-34 151.4 84 86.9
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 2.4e-33 148.3 95 73.7
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 2.9e-31 141.4 126 59.5
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 7.1e-30 136.7 71 81.7
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 6.1e-29 133.7 103 68.0
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 5.1e-28 130.6 90 74.4
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 8.7e-28 129.8 96 71.9
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 3.6e-21 107.8 60 83.3
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 2.9e-15 88.2 47 78.7
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 2.9e-15 88.2 80 60.0
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 5.0e-15 87.4 77 61.0
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 7.2e-14 83.6 48 77.1
Haze_25304 Corylus avellana HOM05D003080 ORTHO05D009457 2.0e-11 75.5 75 62.7
SEGI_19526 Sequoiadendron giganteum HOM05D005018 ORTHO05D043556 9.4e-06 56.6 28 85.7


User provided reference genes

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