Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 3.8e-217 758.8 735 100.0
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 1.7e-156 557.4 738 83.3
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 1.6e-135 487.6 629 83.9
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 8.1e-135 485.3 680 80.9
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 3.7e-132 476.5 682 73.9
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 4.9e-132 476.1 684 82.5
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 9.2e-131 471.9 676 82.4
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 4.6e-130 469.5 627 83.1
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 2.3e-129 467.2 563 90.9
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.5e-128 464.5 680 82.1
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 4.3e-128 463.0 624 82.1
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 9.5e-128 461.8 675 80.1
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 1.2e-127 461.5 681 77.7
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 8.1e-127 458.8 681 79.7
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 2.4e-126 457.2 680 82.2
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 1.3e-124 451.4 635 80.2
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 2.2e-124 450.7 694 76.5
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 2.9e-124 450.3 699 75.8
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 6.4e-124 449.1 624 81.6
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 8.4e-124 448.7 619 79.3
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 1.4e-123 448.0 687 77.1
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 1.9e-123 447.6 681 78.6
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 4.2e-123 446.4 635 79.8
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 5.4e-123 446.0 689 75.9
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 5.4e-123 446.0 680 72.1
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 6.6e-121 439.1 689 77.5
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 4.0e-118 429.9 713 76.0
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 2.9e-116 423.7 619 79.5
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 3.8e-116 423.3 727 74.0
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 7.1e-115 419.1 626 78.3
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 3.5e-114 416.8 679 73.8
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 1.7e-113 414.5 633 78.8
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 5.1e-113 412.9 731 72.4
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 2.5e-112 410.6 675 77.3
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 3.6e-111 406.8 625 78.7
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 6.2e-111 406.0 628 78.0
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 6.2e-111 406.0 689 76.3
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 5.3e-110 402.9 626 79.6
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 9.9e-109 398.7 627 77.8
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 6.4e-108 396.0 627 77.5
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 1.1e-107 395.2 621 79.7
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 2.4e-107 394.0 623 78.2
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 7.1e-107 392.5 618 77.2
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 1.2e-106 391.7 669 73.2
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 2.1e-106 391.0 616 77.9
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 2.7e-106 390.6 614 76.9
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 5.1e-105 386.3 620 76.3
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 5.1e-105 386.3 584 80.0
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 6.7e-105 386.0 627 72.7
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 8.7e-105 385.6 742 67.0
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 8.7e-105 385.6 617 77.5
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 3.3e-104 383.6 592 78.9
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 5.6e-104 382.9 616 77.4
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 5.6e-104 382.9 620 76.6
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 3.7e-103 380.2 617 76.8
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 4.8e-103 379.8 703 70.0
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 1.1e-102 378.6 621 77.9
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 5.3e-102 376.3 688 68.5
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 2.0e-101 374.4 273 69.2
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 9.9e-101 372.1 628 75.3
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 4.9e-100 369.8 617 76.5
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 2.5e-99 367.5 617 75.0
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 4.2e-99 366.7 618 76.1
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 5.5e-99 366.3 617 75.0
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 9.3e-99 365.5 618 76.9
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 2.7e-98 364.0 672 71.7
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 3.5e-98 363.6 631 68.8
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 6.0e-98 362.8 408 77.0
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 1.3e-97 361.7 667 71.8
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 1.8e-97 361.3 618 76.7
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 1.5e-96 358.2 620 70.2
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 1.5e-96 358.2 679 71.3
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 1.5e-96 358.2 618 75.7
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 4.3e-96 356.7 616 70.1
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 7.4e-96 355.9 615 70.2
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 1.6e-95 354.8 619 70.6
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 8.2e-95 352.4 618 70.1
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 5.3e-94 349.7 617 70.7
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 1.2e-93 348.6 676 70.7
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 1.3e-92 345.1 618 75.9
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 4.9e-92 343.2 748 64.7
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 1.6e-90 338.2 619 74.2
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 2.1e-90 337.8 617 73.7
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 1.9e-88 331.3 278 61.2
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 4.8e-87 326.6 500 86.8
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 4.8e-87 326.6 686 65.9
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 4.1e-86 323.6 694 61.7
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 1.5e-85 321.6 271 57.6
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 1.5e-85 321.6 630 72.7
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 1.7e-84 318.2 618 57.9
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 2.5e-83 314.3 625 71.5
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 3.0e-81 307.4 268 57.1
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 3.9e-81 307.0 399 71.7
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 8.2e-79 299.3 261 58.2
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 1.8e-78 298.1 200 69.0
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 6.9e-78 296.2 612 72.2
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 2.8e-63 247.7 498 81.1
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 5.7e-56 223.4 507 78.3
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 7.5e-56 223.0 502 76.7
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 5.0e-52 210.3 215 47.4
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 7.2e-51 206.5 543 68.0
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 1.1e-38 166.0 126 64.3
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 1.4e-38 165.6 296 73.3
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 1.7e-31 142.1 180 46.1
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 2.3e-28 131.7 82 80.5
Pp3c3_19290 Physcomitrium patens HOM05D007098 ORTHO05D008793 1.1e-27 129.4 184 35.9
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 5.6e-27 127.1 200 33.5
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 3.6e-26 124.4 89 69.7
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 3.6e-26 124.4 79 78.5
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 8.3e-23 113.2 69 85.5
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 8.3e-23 113.2 82 72.0
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 6.0e-21 107.1 196 29.1
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 8.6e-20 103.2 426 80.5
QL06p001995 Quercus lobata HOM05D007098 ORTHO05D008793 2.0e-16 92.0 77 64.9
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 4.7e-10 70.9 48 70.8
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 2.4e-09 68.6 55 65.5
Aa31LG8G16030 Aethionema arabicum HOM05D003056 ORTHO05D003422 2.0e-08 65.5 139 26.6
COL.COLO4_17527 Corchorus olitorius HOM05D000891 ORTHO05D008746 3.4e-08 64.7 132 33.3
Hma1.2p1_1303F.1_g274420 Hydrangea macrophylla HOM05D003056 ORTHO05D003422 3.4e-08 64.7 170 27.1
MD13G1249100 Malus domestica HOM05D003056 ORTHO05D003422 3.4e-08 64.7 178 24.7
Potri.006G166200 Populus trichocarpa HOM05D003056 ORTHO05D003422 4.4e-08 64.3 250 24.0
AL3G52990 Arabidopsis lyrata HOM05D003056 ORTHO05D003422 1.3e-07 62.8 174 24.7
Sabra06G0127800 Salix brachista HOM05D003056 ORTHO05D003422 1.7e-07 62.4 174 25.3
EL10Ac8g18299 Beta vulgaris HOM05D003056 ORTHO05D003422 2.9e-07 61.6 149 26.8
Sc03g0010580 Simmondsia chinensis HOM05D002453 ORTHO05D008746 3.8e-07 61.2 122 27.0
AT2G18940 Arabidopsis thaliana HOM05D003056 ORTHO05D003422 6.4e-07 60.5 155 23.9
Haze_09312 Corylus avellana HOM05D002453 ORTHO05D008746 6.4e-07 60.5 131 27.5
EL10Ac2g04386 Beta vulgaris HOM05D004783 ORTHO05D005581 8.4e-07 60.1 173 26.0
FvH4_4g07880 Fragaria vesca HOM05D003056 ORTHO05D003422 8.4e-07 60.1 165 26.1
Ciclev10007460m.g Citrus clementina HOM05D003056 ORTHO05D003422 1.1e-06 59.7 243 22.2
RcHm_v2.0_Chr4g0401161 Rosa chinensis HOM05D003056 ORTHO05D003422 1.1e-06 59.7 165 26.1
Rhsim12G0158500 Rhododendron simsii HOM05D003056 ORTHO05D003422 1.4e-06 59.3 145 24.8
CARHR109480 Cardamine hirsuta HOM05D003056 ORTHO05D003422 1.9e-06 58.9 142 26.1
FAN17G0903 Fragaria x ananassa HOM05D003056 ORTHO05D003422 1.9e-06 58.9 165 25.5
MD16G1255600 Malus domestica HOM05D003056 ORTHO05D003422 1.9e-06 58.9 173 24.3
Atru.ctg752_3.82 Acer truncatum HOM05D002453 ORTHO05D008746 2.4e-06 58.5 144 27.1
QL08p056726 Quercus lobata HOM05D002453 ORTHO05D008746 2.4e-06 58.5 131 29.0
CDE07G1469 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 3.2e-06 58.2 128 25.8
FAN12G3026 Fragaria x ananassa HOM05D003056 ORTHO05D003422 3.2e-06 58.2 165 25.5
Hma1.2p1_0057F.1_g032040 Hydrangea macrophylla HOM05D004783 ORTHO05D005581 3.2e-06 58.2 181 24.3
TWI75G1155 Tripterygium wilfordii HOM05D004783 ORTHO05D005581 3.2e-06 58.2 172 25.0
AUR62023108 Chenopodium quinoa HOM05D004783 ORTHO05D005581 4.2e-06 57.8 146 25.3
Oeu062248.1 Olea europaea HOM05D004783 ORTHO05D005581 4.2e-06 57.8 195 24.1
Os04g0488200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 4.2e-06 57.8 100 31.0
Prupe.3G037500 Prunus persica HOM05D003056 ORTHO05D003422 4.2e-06 57.8 165 27.3
SpUn0483_0010 Schrenkiella parvula HOM05D003056 ORTHO05D003422 4.2e-06 57.8 155 24.5
SGA_v2.0_scaffold21G09513 Striga asiatica HOM05D004783 ORTHO05D005581 4.2e-06 57.8 193 26.4
Atru.chr7.865 Acer truncatum HOM05D003056 ORTHO05D003422 5.4e-06 57.4 165 24.2
BcaC01g01383 Brassica carinata HOM05D002453 ORTHO05D008746 5.4e-06 57.4 131 27.5
C03p91440 Brassica napus HOM05D002453 ORTHO05D008746 5.4e-06 57.4 131 27.5
BolC3t21463H Brassica oleracea HOM05D002753 ORTHO05D003097 5.4e-06 57.4 131 27.5
COL.COLO4_31844 Corchorus olitorius HOM05D000001 ORTHO05D009259 5.4e-06 57.4 134 26.9
A05p18370 Brassica napus HOM05D002753 ORTHO05D003097 7.1e-06 57.0 131 29.8
BraA05t20727Z Brassica rapa HOM05D002753 ORTHO05D003097 7.1e-06 57.0 131 29.8
CiPaw.11G159300 Carya illinoinensis HOM05D002453 ORTHO05D008746 7.1e-06 57.0 131 27.5
CiPaw.13G145000 Carya illinoinensis HOM05D004783 ORTHO05D005581 7.1e-06 57.0 194 23.2
COL.COLO4_37265 Corchorus olitorius HOM05D000001 ORTHO05D009862 7.1e-06 57.0 96 35.4
Carub.0003s3317 Capsella rubella HOM05D003056 ORTHO05D003422 9.3e-06 56.6 195 22.6
CAN.G147.12 Capsicum annuum HOM05D004783 ORTHO05D005581 9.3e-06 56.6 148 25.0
AUR62009429 Chenopodium quinoa HOM05D004783 ORTHO05D005581 9.3e-06 56.6 202 21.3
Nn8g40410 Nelumbo nucifera HOM05D003056 ORTHO05D003422 9.3e-06 56.6 142 27.5
Nitab4.5_0003706g0010 Nicotiana tabacum HOM05D002453 ORTHO05D008746 9.3e-06 56.6 130 28.5


User provided reference genes

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