Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 2091.6 1070 100.0
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1837.4 1077 87.7
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1798.9 1120 84.5
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1727.2 1080 81.2
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1727.2 1078 81.4
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1722.2 1078 81.3
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1722.2 1076 80.9
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1717.2 1011 84.6
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1717.2 1084 81.4
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1712.6 1077 81.1
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1700.6 1072 79.7
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1698.3 1072 79.7
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1697.6 1075 80.1
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1697.2 1072 79.5
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1696.4 1076 79.4
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1691.4 1074 79.8
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1688.7 1077 82.9
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1684.8 1070 79.4
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1667.9 1088 78.5
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1666.0 1078 78.9
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1649.0 1070 78.8
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1648.3 1070 78.4
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1647.9 1071 78.2
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1642.1 1079 77.1
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1640.2 1070 78.5
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1639.4 1070 77.3
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1637.1 1075 76.7
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1636.7 1099 77.8
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1630.5 996 80.6
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1629.8 1074 76.9
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1627.8 1083 76.4
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1624.4 1079 75.4
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 1624.0 1075 76.2
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1621.3 1080 75.5
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 1620.5 1075 75.7
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1618.2 1070 75.4
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1614.0 1074 77.0
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1614.0 1086 75.3
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1609.0 1076 75.0
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1604.0 1076 75.4
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1600.9 1070 75.6
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1598.2 1079 75.7
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1597.0 1078 74.5
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1594.3 1081 74.7
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1592.8 1073 74.7
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1591.2 1070 75.0
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1587.8 1068 74.3
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1587.4 1074 74.9
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1585.5 1081 74.7
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1579.3 947 83.4
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1574.7 1079 75.3
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1574.3 1078 73.8
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1562.0 1103 73.5
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1562.0 970 80.1
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1548.1 1071 73.4
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1547.7 1095 72.3
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1543.1 1071 73.2
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1542.7 1078 73.2
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1540.0 1079 73.2
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1539.2 1119 71.8
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1538.5 1144 70.4
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1537.3 946 81.2
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1536.9 1072 74.3
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1535.4 997 77.6
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1531.5 1074 73.3
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1521.9 956 81.9
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1513.8 1159 68.8
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1494.2 987 75.4
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1484.9 964 77.6
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1479.2 1222 65.1
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1454.9 1100 69.5
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1442.2 1041 69.7
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1419.4 1031 68.9
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1417.5 977 73.8
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1415.2 1074 67.6
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1387.5 867 80.7
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1362.1 977 68.9
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1343.2 1195 61.9
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1334.7 883 75.8
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1317.8 1089 65.1
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1308.5 1120 62.5
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1273.1 1040 62.0
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1265.0 1037 61.1
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1255.0 1003 62.9
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1252.7 970 68.1
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 0.0e+00 1169.1 1047 54.9
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 0.0e+00 1135.9 1139 55.7
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 0.0e+00 1095.5 664 81.9
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 0.0e+00 1076.6 1028 54.7
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 6.3e-306 1054.3 1099 54.9
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 8.3e-306 1053.9 751 70.3
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 7.5e-299 1030.8 996 56.5
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 3.2e-289 998.8 1064 50.9
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 3.9e-287 991.9 1050 49.8
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 5.1e-271 938.3 592 79.1
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 1.5e-267 926.8 616 74.5
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 7.9e-256 887.9 518 92.3
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 6.9e-252 874.8 623 78.8
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 4.3e-230 802.4 581 70.1
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 9.7e-222 774.6 503 77.9
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 3.5e-211 739.6 472 78.4
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.8e-196 690.6 817 51.8
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 5.6e-177 625.9 459 69.9
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 4.0e-175 619.8 385 81.3
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 5.2e-175 619.4 409 76.8
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 1.7e-173 614.4 625 55.7
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 4.9e-173 612.8 397 76.6
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 1.9e-153 547.7 355 78.3
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 3.8e-141 506.9 328 78.0
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 1.5e-134 485.0 342 74.6
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 5.8e-134 483.0 310 80.0
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 1.4e-132 478.4 392 66.6
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 9.6e-129 465.7 284 83.1
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.1e-116 425.6 294 70.4
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.5e-116 424.5 818 38.1
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 2.4e-103 381.3 197 89.8
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.4e-100 372.1 240 78.8
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.9e-84 318.5 218 73.9
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 3.0e-82 311.2 292 50.0
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 1.1e-68 266.2 186 75.3
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 8.6e-61 240.0 177 73.4
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 2.0e-57 228.8 187 64.2
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 1.7e-53 215.7 142 74.6
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 3.3e-44 184.9 150 60.7
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 5.4e-39 167.5 112 75.0
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 5.1e-37 161.0 105 74.3
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 1.1e-36 159.8 203 46.3
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 7.3e-36 157.1 193 47.2
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 6.2e-35 154.1 148 53.4
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 1.4e-34 152.9 101 73.3
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 5.2e-34 151.0 125 59.2
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 3.4e-33 148.3 90 77.8
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 1.2e-30 139.8 111 62.2
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 7.8e-30 137.1 96 71.9
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 3.0e-29 135.2 124 63.7
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 3.0e-29 135.2 124 63.7
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 7.3e-28 130.6 120 59.2
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 9.6e-28 130.2 89 67.4
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 4.5e-25 121.3 139 54.7
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 5.4e-23 114.4 210 39.5
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 4.6e-22 111.3 75 69.3
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 9.0e-18 97.1 67 76.1
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.5e-17 96.3 69 68.1
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 1.1e-15 90.1 137 43.8
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 2.3e-13 82.4 51 72.5
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 3.9e-13 81.6 55 70.9
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 4.3e-12 78.2 54 64.8
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 6.2e-11 74.3 60 65.0
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 5.8e-09 67.8 37 81.1
Thecc.03G162400 Theobroma cacao HOM05D004422 ORTHO05D408086 1.1e-07 63.5 45 62.2
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 1.9e-07 62.8 44 63.6
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 1.9e-07 62.8 44 63.6
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 1.9e-07 62.8 44 63.6
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 3.2e-07 62.0 44 63.6
TPR.G17647 Trifolium pratense HOM05D004422 ORTHO05D030592 5.5e-07 61.2 45 60.0
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 7.1e-07 60.8 55 56.4
arahy.Tifrunner.gnm1.ann1.15LB1A Arachis hypogaea HOM05D000228 ORTHO05D013213 9.3e-07 60.5 43 62.8
arahy.Tifrunner.gnm1.ann1.6S8N9S Arachis hypogaea HOM05D000228 ORTHO05D013213 2.7e-06 58.9 44 59.1


User provided reference genes

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