Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 3.3e-234 814.7 421 100.0
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 2.9e-222 775.0 419 94.0
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 2.1e-220 768.8 419 93.3
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 1.4e-219 766.1 419 93.8
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 9.7e-218 760.0 420 91.4
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 3.7e-217 758.1 419 92.4
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 3.7e-217 758.1 473 84.4
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 3.7e-217 758.1 473 84.4
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 9.1e-216 753.4 418 91.6
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 1.2e-215 753.1 419 91.6
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 2.6e-215 751.9 418 90.9
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 4.5e-215 751.1 418 91.1
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 2.2e-214 748.8 419 90.5
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 2.9e-214 748.4 419 90.9
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 3.8e-214 748.0 418 90.0
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 3.8e-214 748.0 418 90.2
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 5.0e-214 747.7 419 90.2
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 5.0e-214 747.7 419 90.5
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 1.5e-213 746.1 418 90.7
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 1.9e-213 745.7 418 90.0
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 1.9e-213 745.7 419 90.5
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 3.2e-213 745.0 421 90.0
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 3.2e-213 745.0 418 89.7
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 4.2e-213 744.6 418 89.5
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 4.2e-213 744.6 419 89.7
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 4.2e-213 744.6 419 89.7
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 5.5e-213 744.2 418 90.9
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 5.5e-213 744.2 421 89.8
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 5.5e-213 744.2 418 90.2
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 7.2e-213 743.8 418 90.2
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 9.4e-213 743.4 418 90.0
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 2.1e-212 742.3 418 90.0
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 2.1e-212 742.3 419 89.7
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 2.7e-212 741.9 418 90.2
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 2.7e-212 741.9 418 90.4
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 3.6e-212 741.5 418 90.4
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 3.6e-212 741.5 418 90.4
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 3.6e-212 741.5 418 90.4
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 3.6e-212 741.5 419 90.9
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 4.7e-212 741.1 418 90.2
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 4.7e-212 741.1 418 90.0
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 6.1e-212 740.7 419 89.5
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 8.0e-212 740.3 427 88.5
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 1.4e-211 739.6 418 89.7
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 1.8e-211 739.2 418 90.2
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 1.8e-211 739.2 421 89.1
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 2.3e-211 738.8 419 89.5
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 3.0e-211 738.4 418 90.0
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 5.2e-211 737.6 418 89.7
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 5.2e-211 737.6 419 88.5
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 5.2e-211 737.6 419 89.3
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 6.7e-211 737.3 418 89.7
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 6.7e-211 737.3 418 89.0
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 6.7e-211 737.3 420 89.5
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 8.8e-211 736.9 419 88.8
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 1.5e-210 736.1 418 89.2
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 1.5e-210 736.1 419 89.7
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 2.6e-210 735.3 419 89.3
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 2.6e-210 735.3 421 88.8
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 3.3e-210 734.9 419 88.1
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 4.4e-210 734.6 418 89.5
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 4.4e-210 734.6 419 89.0
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 7.5e-210 733.8 416 89.4
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 7.5e-210 733.8 418 89.2
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 9.7e-210 733.4 419 89.5
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 9.7e-210 733.4 419 89.5
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 9.7e-210 733.4 418 89.2
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 9.7e-210 733.4 418 88.8
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 1.7e-209 732.6 418 89.2
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 1.7e-209 732.6 419 87.4
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 2.2e-209 732.3 418 89.2
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 2.2e-209 732.3 418 89.2
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 2.8e-209 731.9 419 88.8
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 3.7e-209 731.5 419 88.1
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 3.7e-209 731.5 419 88.8
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 3.7e-209 731.5 419 87.8
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 6.3e-209 730.7 421 88.4
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 6.3e-209 730.7 421 88.1
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 1.1e-208 729.9 419 89.5
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 1.1e-208 729.9 421 88.1
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 1.1e-208 729.9 418 88.0
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 2.4e-208 728.8 421 87.4
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 2.4e-208 728.8 421 88.8
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 3.1e-208 728.4 419 87.4
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 4.1e-208 728.0 419 88.3
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 4.1e-208 728.0 421 87.9
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 5.3e-208 727.6 419 88.3
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 9.1e-208 726.9 421 87.6
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 9.1e-208 726.9 419 87.1
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 9.1e-208 726.9 419 87.1
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 1.6e-207 726.1 419 87.6
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 2.7e-207 725.3 419 86.9
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 2.7e-207 725.3 438 86.3
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 3.5e-207 724.9 448 85.0
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 5.9e-207 724.2 419 86.6
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 1.0e-206 723.4 419 87.8
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.0e-206 723.4 434 86.4
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 1.0e-206 723.4 421 87.4
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 1.7e-206 722.6 418 86.4
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 2.9e-206 721.8 419 87.6
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 6.5e-206 720.7 419 88.1
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 1.5e-205 719.5 419 87.4
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 7.2e-205 717.2 419 86.9
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 7.2e-205 717.2 428 87.1
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 7.2e-205 717.2 449 82.6
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 7.2e-205 717.2 419 85.9
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.6e-204 716.1 436 83.7
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 8.0e-204 713.8 420 86.7
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 1.0e-203 713.4 427 84.5
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 1.4e-203 713.0 419 85.7
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 1.8e-203 712.6 419 87.1
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 1.8e-203 712.6 421 87.4
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 6.8e-203 710.7 419 85.4
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 4.4e-202 708.0 419 85.7
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 3.1e-200 701.8 419 84.2
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 7.7e-199 697.2 421 84.3
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 6.1e-196 687.6 386 90.7
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 2.3e-195 685.6 419 84.7
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 5.2e-195 684.5 375 92.0
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 1.7e-193 679.5 504 72.8
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 3.7e-193 678.3 469 78.5
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 4.9e-193 677.9 424 81.4
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 8.6e-190 667.2 416 85.1
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.1e-189 666.8 409 82.9
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 5.6e-189 664.5 419 81.4
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 9.5e-189 663.7 378 87.6
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 2.9e-185 652.1 373 87.1
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 1.8e-184 649.4 363 90.4
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 3.2e-184 648.7 385 85.2
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 2.3e-179 632.5 399 79.4
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 2.6e-178 629.0 403 79.4
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 1.0e-174 617.1 419 77.3
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 1.5e-170 603.2 334 91.0
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 2.0e-170 602.8 417 73.4
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 7.1e-168 594.3 408 77.2
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 7.3e-165 584.3 397 72.3
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 3.9e-158 562.0 309 92.9
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 3.6e-148 528.9 418 64.8
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 2.4e-147 526.2 394 67.0
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 2.2e-145 519.6 394 74.6
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 2.3e-142 509.6 396 65.7
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 1.9e-141 506.5 458 64.4
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.8e-139 500.0 284 88.7
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 8.4e-137 491.1 279 90.3
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 2.6e-122 443.0 260 85.0
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 6.3e-116 421.8 239 90.4
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 8.2e-116 421.4 236 88.6
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 3.3e-109 399.4 225 87.6
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 6.7e-102 375.2 244 77.9
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 6.5e-97 358.6 205 89.3
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 5.9e-90 335.5 288 64.9
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 1.1e-72 278.1 207 71.0
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 1.9e-72 277.3 293 51.9
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 3.5e-66 256.5 147 87.8
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 1.6e-58 231.1 189 61.4
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 1.3e-52 211.5 134 74.6
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 1.3e-49 201.4 177 65.5
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 1.2e-45 188.3 119 74.8
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 1.1e-43 181.8 110 87.3
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 1.9e-43 181.0 150 67.3
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 1.5e-40 171.4 109 80.7
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 5.3e-38 162.9 287 37.3
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 9.3e-35 152.1 157 58.6
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 1.2e-34 151.8 157 58.0
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 9.6e-32 142.1 82 87.8
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 5.8e-29 132.9 179 41.9
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 2.1e-26 124.4 149 51.7
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.3e-23 115.2 69 82.6
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 2.5e-16 90.9 100 54.0
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 1.0e-12 79.0 49 83.7
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 1.4e-11 75.1 46 84.8
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 3.2e-11 73.9 40 92.5
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 2.1e-10 71.2 113 38.9
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 3.5e-10 70.5 37 89.2
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 4.6e-10 70.1 111 38.7
TAR636G1356 Trochodendron aralioides HOM05D002574 ORTHO05D002797 1.8e-09 68.2 63 52.4
HanXRQChr15g0475161 Helianthus annuus HOM05D004007 ORTHO05D222506 1.8e-06 58.2 34 79.4


User provided reference genes

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