Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 1.6e-183 646.0 333 100.0
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 5.1e-145 518.1 394 74.6
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.1e-136 490.3 392 70.9
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.3e-135 486.9 391 70.1
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 1.6e-135 486.5 392 70.4
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 2.8e-135 485.7 393 70.0
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 1.2e-133 480.3 392 70.2
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 3.8e-132 475.3 391 68.5
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 3.8e-132 475.3 392 69.4
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 3.8e-132 475.3 391 69.6
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 4.9e-132 474.9 354 74.6
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 4.9e-132 474.9 392 69.4
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 6.4e-132 474.6 392 69.1
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 8.4e-132 474.2 392 69.4
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 8.4e-132 474.2 392 68.9
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 1.4e-131 473.4 391 68.5
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 1.4e-131 473.4 354 73.7
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 1.9e-131 473.0 392 68.6
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 1.9e-131 473.0 391 70.1
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 2.5e-131 472.6 392 68.9
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 2.5e-131 472.6 392 68.4
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 3.2e-131 472.2 392 68.6
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 4.2e-131 471.9 392 68.6
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 4.2e-131 471.9 392 68.4
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 4.2e-131 471.9 392 68.6
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 4.2e-131 471.9 392 68.6
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 5.5e-131 471.5 393 68.7
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 5.5e-131 471.5 446 62.8
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 5.5e-131 471.5 446 62.8
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 7.1e-131 471.1 391 69.3
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 7.1e-131 471.1 394 68.0
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 9.3e-131 470.7 392 68.1
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.2e-130 470.3 392 68.6
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 1.2e-130 470.3 395 68.6
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 1.6e-130 469.9 392 68.4
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 2.1e-130 469.5 392 68.9
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 2.7e-130 469.2 349 73.6
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 2.7e-130 469.2 392 68.4
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 3.5e-130 468.8 394 68.3
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 3.5e-130 468.8 392 67.3
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 3.5e-130 468.8 392 67.9
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 4.6e-130 468.4 392 67.9
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 4.6e-130 468.4 393 69.2
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 6.0e-130 468.0 392 68.1
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 7.9e-130 467.6 391 68.8
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 1.0e-129 467.2 392 68.1
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 1.0e-129 467.2 392 67.6
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 1.0e-129 467.2 392 67.9
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 2.3e-129 466.1 392 67.6
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 2.3e-129 466.1 392 67.1
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 2.3e-129 466.1 354 72.6
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 2.3e-129 466.1 392 68.4
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 2.3e-129 466.1 392 67.9
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 2.3e-129 466.1 392 67.6
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 3.0e-129 465.7 392 68.1
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 3.0e-129 465.7 392 68.1
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 3.0e-129 465.7 392 68.1
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 3.0e-129 465.7 392 67.6
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 3.9e-129 465.3 392 68.1
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 5.1e-129 464.9 391 68.3
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 6.7e-129 464.5 392 67.6
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 6.7e-129 464.5 394 67.5
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 8.7e-129 464.2 392 66.8
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 8.7e-129 464.2 392 67.9
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 1.1e-128 463.8 392 67.1
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 1.1e-128 463.8 357 71.7
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 1.1e-128 463.8 395 67.6
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 1.5e-128 463.4 392 67.6
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 1.5e-128 463.4 392 66.8
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 1.5e-128 463.4 351 72.6
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 1.9e-128 463.0 392 67.6
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.9e-128 463.0 392 67.9
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 2.5e-128 462.6 392 67.9
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 2.5e-128 462.6 391 67.5
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 5.6e-128 461.5 392 66.6
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 7.4e-128 461.1 392 67.3
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 7.4e-128 461.1 364 70.3
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 1.3e-127 460.3 392 67.9
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 1.6e-127 459.9 391 66.5
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 2.1e-127 459.5 392 66.6
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 2.1e-127 459.5 392 67.9
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 2.1e-127 459.5 392 67.1
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 2.8e-127 459.1 392 67.1
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.8e-127 459.1 392 66.6
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 2.8e-127 459.1 392 67.1
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 3.7e-127 458.8 391 68.5
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 3.7e-127 458.8 421 64.6
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 4.8e-127 458.4 394 67.0
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 4.8e-127 458.4 392 66.3
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 6.2e-127 458.0 372 68.8
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 8.2e-127 457.6 392 67.1
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 8.2e-127 457.6 392 67.1
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 1.1e-126 457.2 392 66.8
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 1.1e-126 457.2 391 67.3
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 1.4e-126 456.8 394 66.5
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 1.4e-126 456.8 391 66.0
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 1.4e-126 456.8 392 66.1
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.8e-126 456.4 429 62.9
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 1.8e-126 456.4 394 66.2
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 2.4e-126 456.1 392 66.6
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 3.1e-126 455.7 394 66.2
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 5.3e-126 454.9 392 66.8
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 6.9e-126 454.5 391 67.3
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 9.0e-126 454.1 392 66.1
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 9.0e-126 454.1 394 66.0
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 9.0e-126 454.1 394 66.0
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 1.2e-125 453.8 392 65.6
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 2.0e-125 453.0 411 64.7
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 1.3e-124 450.3 392 65.1
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 1.3e-124 450.3 392 65.1
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 2.9e-124 449.1 391 65.7
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 2.9e-124 449.1 391 65.7
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 2.9e-124 449.1 392 64.5
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 3.8e-124 448.7 400 64.8
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 6.5e-124 448.0 392 64.8
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 1.1e-123 447.2 392 66.3
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 1.1e-123 447.2 392 64.3
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 5.5e-123 444.9 391 64.5
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 9.3e-123 444.1 386 65.5
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.7e-122 442.6 409 62.8
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 6.7e-121 438.0 391 63.7
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 1.1e-120 437.2 392 64.0
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 5.7e-120 434.9 370 67.6
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 1.3e-119 433.7 394 64.7
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 1.1e-115 420.6 454 57.5
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 1.6e-114 416.8 392 63.3
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 6.1e-114 414.8 396 61.1
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 7.9e-114 414.5 357 63.3
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.1e-112 410.6 368 64.9
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 9.7e-112 407.5 348 66.7
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 1.3e-108 397.1 309 71.5
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 3.8e-108 395.6 351 61.8
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 1.1e-107 394.0 351 64.4
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 9.4e-107 391.0 392 61.5
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 1.2e-106 390.6 346 64.2
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 3.1e-102 375.9 329 65.7
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 5.3e-102 375.2 433 55.7
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 3.5e-101 372.5 347 58.2
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 3.7e-95 352.4 285 68.8
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 7.7e-93 344.7 361 53.5
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 3.0e-89 332.8 278 68.7
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 2.2e-87 326.6 362 52.5
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 6.3e-87 325.1 355 53.0
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.1e-86 324.3 238 73.9
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.2e-85 320.9 262 68.3
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 2.6e-80 303.1 235 69.4
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 6.3e-71 271.9 240 64.2
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 1.8e-70 270.4 211 70.6
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 3.6e-66 256.1 227 65.2
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 9.2e-62 241.5 210 65.7
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 8.3e-55 218.4 198 63.1
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 5.6e-51 205.7 204 57.8
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 3.7e-47 193.0 147 70.7
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 6.0e-37 159.1 247 39.7
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 9.6e-35 151.8 129 65.1
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 1.4e-33 147.9 87 90.8
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 7.6e-32 142.1 189 42.3
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 1.5e-27 127.9 148 54.1
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 1.4e-25 121.3 128 57.0
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 7.6e-24 115.5 106 61.3
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 2.3e-20 104.0 122 54.1
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 3.0e-20 103.6 106 60.4
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 3.3e-19 100.1 122 52.5
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 8.1e-18 95.5 189 34.4
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 2.1e-13 80.9 131 37.4
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 6.7e-12 75.9 49 81.6
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 2.5e-11 73.9 79 57.0
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 9.6e-11 72.0 46 82.6
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 6.2e-10 69.3 40 90.0
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 1.4e-09 68.2 37 86.5
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 2.4e-09 67.4 82 52.4


User provided reference genes

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