Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 0.0e+00 1220.7 706 100.0
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 3.8e-283 978.0 703 75.5
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 8.8e-272 940.3 703 79.5
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 1.4e-269 932.9 703 78.9
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 2.0e-239 832.8 704 71.7
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 3.3e-226 788.9 704 68.0
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 9.2e-221 770.8 704 69.9
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 3.5e-220 768.8 711 68.1
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.0e-219 765.8 704 69.5
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.9e-219 765.4 704 66.2
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 6.6e-219 764.6 704 69.5
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 1.1e-218 763.8 704 69.2
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.1e-218 763.8 711 68.4
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 7.3e-218 761.1 704 68.6
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.7e-217 758.4 704 68.8
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.1e-216 757.3 704 68.8
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 5.2e-216 755.0 704 67.9
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 1.5e-215 753.4 704 67.3
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 2.6e-215 752.7 704 65.8
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 2.6e-215 752.7 704 64.3
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 4.2e-213 745.3 705 65.7
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 6.0e-212 741.5 705 64.7
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 1.7e-211 740.0 704 67.0
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 3.0e-211 739.2 709 64.7
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 3.9e-211 738.8 711 64.7
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 1.9e-210 736.5 705 62.7
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.1e-208 730.7 755 57.1
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.0e-207 726.5 727 61.6
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 2.4e-205 719.5 704 65.2
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 7.1e-205 718.0 704 63.4
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 1.6e-201 706.8 712 61.2
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.1e-201 706.4 707 57.3
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 1.1e-200 704.1 704 64.9
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 4.0e-200 702.2 714 60.5
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 1.7e-198 696.8 704 63.6
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 2.2e-198 696.4 704 61.8
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 2.9e-198 696.0 706 63.7
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 4.9e-198 695.3 707 63.4
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 7.1e-197 691.4 704 60.8
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 1.8e-192 676.8 708 61.4
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 2.4e-192 676.4 772 49.5
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 2.6e-191 672.9 736 59.8
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 4.5e-191 672.2 704 61.5
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 1.7e-190 670.2 704 60.8
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 3.8e-190 669.1 674 63.9
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 1.4e-189 667.2 708 57.6
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 5.5e-189 665.2 704 63.1
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 7.1e-189 664.8 734 59.0
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 2.1e-188 663.3 708 58.5
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 2.7e-188 662.9 718 58.2
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 2.3e-187 659.8 704 60.2
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 4.3e-186 655.6 724 58.3
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 1.3e-185 654.1 704 62.4
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 1.8e-184 650.2 705 53.8
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 7.6e-183 644.8 706 60.5
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 5.5e-181 638.6 634 67.7
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 7.1e-181 638.3 743 54.8
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 3.9e-179 632.5 707 57.3
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 4.3e-178 629.0 705 53.5
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 2.2e-177 626.7 707 55.3
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 4.8e-177 625.5 708 58.8
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 6.9e-176 621.7 704 50.0
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 6.9e-176 621.7 705 57.7
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 1.5e-175 620.5 707 58.1
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 5.9e-175 618.6 705 58.4
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 2.9e-174 616.3 707 58.8
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 1.1e-173 614.4 656 63.7
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.4e-173 614.0 706 56.5
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 1.9e-173 613.6 703 59.5
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 3.2e-173 612.8 711 58.9
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 1.6e-172 610.5 704 59.1
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 3.0e-171 606.3 705 58.7
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 2.0e-170 603.6 706 58.2
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 4.3e-170 602.4 704 56.5
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 5.7e-170 602.1 705 58.2
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 2.8e-169 599.7 709 56.7
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 4.8e-169 599.0 706 58.2
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 6.3e-169 598.6 704 57.0
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 1.8e-168 597.0 706 57.5
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 9.1e-168 594.7 704 55.4
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 1.2e-167 594.3 706 59.2
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 2.6e-167 593.2 705 58.9
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 5.9e-167 592.0 705 57.4
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 5.9e-167 592.0 706 57.9
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 2.2e-166 590.1 705 57.9
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 2.5e-165 586.6 706 56.2
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 7.2e-165 585.1 706 56.9
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.4e-163 580.9 706 56.7
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 8.8e-163 578.2 706 55.5
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 2.0e-162 577.0 706 55.1
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 7.4e-162 575.1 709 56.7
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 9.7e-162 574.7 635 60.2
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 2.9e-158 563.1 697 56.5
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 1.1e-157 561.2 706 50.1
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 5.5e-157 558.9 708 57.2
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 6.1e-156 555.4 709 55.4
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 1.4e-155 554.3 715 54.8
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 5.0e-150 535.8 542 63.5
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 1.5e-149 534.3 486 71.0
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.5e-149 532.3 523 59.3
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 1.1e-144 518.1 635 57.5
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.8e-144 517.3 710 47.6
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 5.2e-139 499.2 699 44.5
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.4e-138 496.1 518 62.4
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 6.3e-137 492.3 533 50.8
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 1.2e-135 488.0 709 50.9
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 5.9e-135 485.7 577 56.7
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 9.8e-130 468.4 714 43.0
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 4.1e-128 463.0 711 42.3
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.3e-126 457.2 725 49.7
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.5e-125 454.5 706 43.1
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 3.1e-123 446.8 728 44.1
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 2.2e-121 440.7 714 41.0
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.6e-116 424.5 633 53.2
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 3.4e-114 416.8 730 39.2
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 7.1e-112 409.1 523 54.9
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 4.4e-106 389.8 467 50.7
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 7.8e-103 379.0 536 47.4
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 3.3e-101 373.6 315 68.3
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 9.0e-91 339.0 534 42.9
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.9e-88 331.3 492 42.1
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.2e-88 330.5 479 43.2
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 3.5e-87 327.0 347 50.4
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 2.2e-81 307.8 725 44.0
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 6.0e-79 299.7 425 52.7
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 1.9e-69 268.1 281 66.2
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 3.7e-68 263.8 258 76.0
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 5.0e-65 253.4 442 41.2
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.3e-62 245.4 251 61.4
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 1.7e-57 228.4 200 59.5
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 7.4e-53 213.0 276 51.4
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 1.6e-47 195.3 128 75.8
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 1.1e-40 172.6 189 59.3
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 1.9e-40 171.8 689 30.0
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 4.7e-39 167.2 126 66.7
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 4.4e-37 160.6 577 26.3
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 9.7e-37 159.5 136 62.5
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 4.8e-36 157.1 211 53.1
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 1.2e-34 152.5 138 62.3
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 7.2e-32 143.3 514 30.2
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.6e-31 142.1 144 66.0
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 3.6e-31 141.0 125 58.4
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 1.0e-30 139.4 110 61.8
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 1.8e-30 138.7 141 67.4
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.5e-29 135.6 127 52.8
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.9e-26 123.6 98 65.3
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 1.3e-25 122.5 127 51.2
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 2.9e-25 121.3 158 44.3
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 2.1e-23 115.2 115 54.8
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 3.6e-23 114.4 261 34.5
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 3.4e-21 107.8 71 70.4
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.4e-21 107.5 98 60.2
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 5.7e-21 107.1 135 43.0
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.8e-19 102.1 98 54.1
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-18 99.4 101 51.5
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-18 99.4 98 52.0
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-18 99.4 98 52.0
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 7.7e-18 96.7 128 45.3
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 8.6e-17 93.2 96 49.0
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.9e-16 92.0 98 49.0
arahy.Tifrunner.gnm1.ann1.H7L4UV Arachis hypogaea HOM05D003682 ORTHO05D004224 4.3e-16 90.9 114 47.4
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.6e-15 89.0 98 50.0
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.6e-15 89.0 52 73.1
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.7e-15 87.4 98 49.0
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.0e-15 86.7 98 48.0
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.0e-14 84.7 61 70.5
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.4e-13 81.3 61 67.2
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.7e-13 80.5 61 67.2
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.5e-13 80.1 61 67.2
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.8e-13 79.7 61 67.2
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.8e-13 79.7 61 67.2
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 1.7e-12 79.0 132 34.1
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 3.7e-12 77.8 284 27.1
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 2.4e-11 75.1 74 55.4
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 2.4e-11 75.1 264 27.3
Prupe.1G572700 Prunus persica HOM05D003682 ORTHO05D004224 5.4e-11 73.9 63 58.7
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 9.2e-11 73.2 76 52.6
Actinidia36898 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.0e-10 72.0 70 51.4
CAN.G475.12 Capsicum annuum HOM05D003682 ORTHO05D004224 1.0e-09 69.7 53 56.6
Nn1g05594 Nelumbo nucifera HOM05D003682 ORTHO05D004224 3.9e-09 67.8 64 60.9
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 7.3e-08 63.5 31 87.1


User provided reference genes

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