Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p014214 Quercus lobata HOM05D005579 ORTHO05D006775 1.3e-117 426.4 212 100.0
Haze_13709 Corylus avellana HOM05D005579 ORTHO05D006775 3.8e-37 159.1 185 55.7
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 1.4e-26 124.0 212 44.3
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 6.8e-26 121.7 213 41.3
MD01G1200900 Malus domestica HOM05D005579 ORTHO05D006775 7.5e-25 118.2 214 42.5
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 6.3e-24 115.2 206 39.3
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 8.3e-24 114.8 180 44.4
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 1.3e-21 107.5 210 40.0
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 1.5e-20 104.0 196 37.8
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.5e-20 103.2 209 41.1
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 5.5e-20 102.1 208 39.9
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 7.2e-20 101.7 214 38.3
Thecc.03G176600 Theobroma cacao HOM05D005579 ORTHO05D006775 7.2e-20 101.7 205 37.1
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.2e-19 100.9 208 39.9
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 4.7e-19 99.0 205 38.0
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 4.7e-19 99.0 235 38.3
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 6.1e-19 98.6 208 38.9
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 1.8e-18 97.1 208 37.5
Cpa.g.sc107.52 Carica papaya HOM05D005579 ORTHO05D006775 8.8e-18 94.7 186 38.7
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 8.8e-18 94.7 206 37.9
Gohir.A12G257850 Gossypium hirsutum HOM05D005579 ORTHO05D006775 2.0e-17 93.6 210 36.2
Gorai.008G277600 Gossypium raimondii HOM05D005579 ORTHO05D006775 7.5e-17 91.7 210 35.7
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 9.8e-17 91.3 208 34.6
Ca_25744_v3 Cicer arietinum L. HOM05D005579 ORTHO05D006775 2.2e-16 90.1 208 37.0
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 2.8e-16 89.7 210 35.7
MELO3C003322.2 Cucumis melo HOM05D005579 ORTHO05D006775 8.3e-16 88.2 215 36.7
Gohir.D12G259200 Gossypium hirsutum HOM05D005579 ORTHO05D006775 8.3e-16 88.2 210 35.2
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 2.4e-15 86.7 227 31.7
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 4.1e-15 85.9 206 37.4
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 4.1e-15 85.9 205 39.0
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 7.0e-15 85.1 206 34.0
Dinv28442 Davidia involucrata HOM05D005579 ORTHO05D006775 1.2e-14 84.3 209 36.8
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 1.6e-14 84.0 206 34.0
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 2.0e-14 83.6 207 38.2
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 4.5e-14 82.4 218 33.9
ClCG09G012930 Citrullus lanatus HOM05D005579 ORTHO05D006775 7.7e-14 81.6 219 36.5
FAN06G4680 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.3e-13 80.9 215 34.0
EL10Ac3g05643 Beta vulgaris HOM05D005579 ORTHO05D006775 1.7e-13 80.5 207 33.8
CsaV3_3G049940 Cucumis sativus L. HOM05D005579 ORTHO05D006775 2.9e-13 79.7 207 37.2
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 2.9e-13 79.7 205 34.6
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 1.1e-12 77.8 210 33.3
Lalb_Chr19g0130841 Lupinus albus HOM05D005579 ORTHO05D006775 4.3e-12 75.9 95 51.6
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 5.6e-12 75.5 205 30.2
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 6.1e-11 72.0 202 32.2
Medtr6g045353 Medicago truncatula HOM05D005579 ORTHO05D006775 2.3e-10 70.1 93 48.4
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 2.3e-10 70.1 209 31.6
FAN10G3029 Fragaria x ananassa HOM05D005579 ORTHO05D006775 4.0e-10 69.3 82 52.4
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 5.2e-10 68.9 213 30.5
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 8.9e-10 68.2 208 33.2
FvH4_7g29490 Fragaria vesca HOM05D005579 ORTHO05D006775 1.5e-09 67.4 97 46.4
Actinidia34112 Actinidia chinensis HOM05D005579 ORTHO05D006775 2.6e-09 66.6 209 30.6
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 2.6e-09 66.6 220 29.5
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 2.6e-09 66.6 200 33.0
FAN06G4979 Fragaria x ananassa HOM05D005579 ORTHO05D006775 6.4e-08 62.0 95 45.3
Oeu056255.1 Olea europaea HOM05D005579 ORTHO05D006775 8.3e-08 61.6 92 38.0
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 1.4e-07 60.8 197 27.9
AUR62015985 Chenopodium quinoa HOM05D005579 ORTHO05D006775 3.2e-07 59.7 151 31.8
Ah.07g206970 Amaranthus hybridus HOM05D005579 ORTHO05D006775 5.4e-07 58.9 188 28.7
AT5G52290 Arabidopsis thaliana HOM05D005579 ORTHO05D006775 7.0e-07 58.5 92 42.4
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 7.0e-07 58.5 79 43.0
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 9.2e-07 58.2 92 42.4
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 1.2e-06 57.8 96 43.8
MBI17_g46440_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D048546 1.6e-06 57.4 92 44.6
CARHR265270 Cardamine hirsuta HOM05D005579 ORTHO05D006775 2.7e-06 56.6 210 28.1
SalBow4G1821 Salvia bowleyana HOM05D005579 ORTHO05D006775 4.6e-06 55.8 85 44.7
SalBow4G2278 Salvia bowleyana HOM05D005579 ORTHO05D006775 4.6e-06 55.8 85 44.7


User provided reference genes

Program Settings