Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 9.7e-83 310.1 154 100.0
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 3.6e-77 291.6 154 92.2
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 1.0e-76 290.0 154 91.6
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 6.8e-76 287.3 154 90.9
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 6.3e-74 280.8 154 88.3
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 3.1e-73 278.5 154 84.4
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 9.1e-73 276.9 154 88.3
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 5.9e-72 274.2 154 83.1
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 7.7e-72 273.9 154 83.1
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 1.0e-71 273.5 154 85.7
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 1.7e-71 272.7 154 85.7
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 1.7e-71 272.7 154 81.8
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 5.0e-71 271.2 154 85.1
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 1.5e-70 269.6 154 83.1
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 1.9e-70 269.2 154 81.8
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 4.2e-70 268.1 154 81.2
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 4.2e-70 268.1 154 81.8
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 5.5e-70 267.7 154 83.8
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.2e-69 266.5 154 78.6
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.2e-69 266.5 154 79.2
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 2.7e-69 265.4 154 83.1
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 2.7e-69 265.4 154 81.8
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 2.7e-69 265.4 154 83.1
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 4.7e-69 264.6 154 77.9
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.4e-68 263.1 154 79.9
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 1.4e-68 263.1 154 77.9
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.3e-68 262.3 154 80.5
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 2.3e-68 262.3 154 80.5
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 3.0e-68 261.9 154 80.5
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 6.8e-68 260.8 154 79.9
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.0e-67 259.2 154 76.6
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 4.4e-67 258.1 154 79.2
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 4.4e-67 258.1 154 79.9
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 1.3e-66 256.5 154 79.2
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 1.7e-66 256.1 154 78.6
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 1.7e-66 256.1 154 79.9
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 3.7e-66 255.0 154 80.5
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 4.9e-66 254.6 154 77.9
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 8.3e-66 253.8 154 77.3
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.1e-65 253.4 154 77.3
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 3.1e-65 251.9 154 75.3
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 3.1e-65 251.9 155 79.4
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 3.1e-65 251.9 155 79.4
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.2e-64 250.0 154 74.7
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.6e-64 249.6 154 75.3
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 2.7e-64 248.8 154 75.3
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 4.5e-64 248.1 154 76.0
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 5.9e-64 247.7 154 77.3
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 7.7e-64 247.3 154 77.3
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 7.7e-64 247.3 154 76.0
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 1.3e-63 246.5 154 75.3
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.9e-63 245.4 154 76.6
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 2.9e-63 245.4 154 77.9
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 5.0e-63 244.6 154 74.0
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 6.6e-63 244.2 154 76.6
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 6.6e-63 244.2 154 76.0
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 1.1e-62 243.4 173 68.8
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.5e-62 243.0 154 76.0
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 3.3e-62 241.9 154 76.0
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 3.3e-62 241.9 154 74.0
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 7.2e-62 240.7 154 75.3
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 7.2e-62 240.7 154 72.7
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 9.5e-62 240.4 154 74.0
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 2.1e-61 239.2 154 73.4
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 2.8e-61 238.8 144 79.2
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.6e-61 238.4 154 73.4
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.6e-61 238.4 154 73.4
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 4.7e-61 238.0 154 73.4
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 6.1e-61 237.7 152 74.3
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.8e-60 236.1 154 72.7
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 2.3e-60 235.7 154 68.8
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 4.0e-60 235.0 154 72.7
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 5.2e-60 234.6 154 72.7
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 6.8e-60 234.2 154 72.1
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 2.0e-59 232.6 154 75.3
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 2.6e-59 232.3 154 72.1
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 2.6e-59 232.3 151 74.8
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 3.4e-59 231.9 151 74.2
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 3.4e-59 231.9 154 72.1
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 9.8e-59 230.3 213 56.8
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 1.3e-58 229.9 154 70.1
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 1.3e-58 229.9 154 68.8
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 1.3e-58 229.9 154 70.1
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 2.9e-58 228.8 154 72.1
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 2.9e-58 228.8 153 70.6
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 3.7e-58 228.4 136 84.6
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 6.3e-58 227.6 154 70.1
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.4e-57 226.5 150 74.7
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 1.4e-57 226.5 146 76.0
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 2.4e-57 225.7 144 73.6
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 3.2e-57 225.3 155 70.3
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 4.1e-57 224.9 155 70.3
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 5.4e-57 224.6 154 68.2
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.7e-56 222.2 150 74.0
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 3.5e-56 221.9 155 69.7
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 3.5e-56 221.9 146 72.6
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 4.6e-56 221.5 154 68.2
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 1.7e-55 219.5 146 71.9
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 5.0e-55 218.0 151 72.2
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 6.6e-55 217.6 155 69.0
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 6.6e-55 217.6 151 67.5
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 1.9e-54 216.1 144 70.8
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 9.5e-54 213.8 156 66.7
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 2.1e-53 212.6 127 78.0
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 2.8e-53 212.2 153 64.7
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 6.1e-53 211.1 154 69.5
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 4.0e-52 208.4 133 73.7
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 8.9e-52 207.2 154 64.3
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 2.2e-50 202.6 188 55.3
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 4.9e-50 201.4 155 61.9
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 7.0e-49 197.6 152 61.2
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 1.7e-47 193.0 154 59.7
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 2.3e-47 192.6 154 59.1
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 3.0e-47 192.2 154 59.7
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 3.9e-47 191.8 154 59.7
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 3.9e-47 191.8 153 59.5
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 2.5e-46 189.1 128 68.0
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 5.6e-46 188.0 148 60.1
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 9.5e-46 187.2 162 58.0
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 6.8e-44 181.0 146 62.3
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 8.9e-44 180.6 153 58.2
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 3.4e-43 178.7 114 76.3
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 7.1e-41 171.0 91 92.3
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 7.8e-40 167.5 99 80.8
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 8.6e-39 164.1 103 76.7
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 3.3e-38 162.2 83 94.0
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 7.3e-38 161.0 109 68.8
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 9.5e-38 160.6 109 69.7
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.6e-37 159.8 104 73.1
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 6.8e-36 154.5 144 50.0
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 3.5e-32 142.1 109 64.2
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 3.9e-31 138.7 148 50.7
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 2.1e-29 132.9 148 45.9
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 2.4e-28 129.4 128 53.1
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 8.9e-28 127.5 151 49.7
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 3.1e-20 102.4 130 43.8
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 9.0e-20 100.9 61 77.0
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 9.0e-20 100.9 61 77.0
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 1.5e-19 100.1 143 38.5
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.4e-17 93.6 67 67.2
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 9.3e-17 90.9 50 82.0
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 1.3e-15 87.0 67 62.7
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 6.6e-15 84.7 129 36.4
MCO15G566 Micromonas commoda HOM05D005446 ORTHO05D006597 2.9e-10 69.3 118 31.4


User provided reference genes

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