Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 1.5e-46 189.1 92 100.0
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 4.2e-41 171.0 91 92.3
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 7.2e-41 170.2 91 91.2
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 9.4e-41 169.9 91 90.1
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 9.4e-41 169.9 91 90.1
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 7.9e-40 166.8 91 89.0
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 7.9e-40 166.8 91 90.1
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 1.0e-39 166.4 91 89.0
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 5.2e-39 164.1 91 86.8
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 8.8e-39 163.3 90 87.8
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 1.5e-38 162.5 91 86.8
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 2.0e-38 162.2 91 82.4
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 2.6e-38 161.8 90 86.7
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 3.3e-38 161.4 91 83.5
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 3.3e-38 161.4 91 85.7
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 7.4e-38 160.2 91 83.5
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 7.4e-38 160.2 83 95.2
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 9.7e-38 159.8 91 83.5
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 1.3e-37 159.5 91 79.1
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 1.7e-37 159.1 91 81.3
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 2.2e-37 158.7 91 81.3
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 2.8e-37 158.3 91 85.7
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.8e-37 158.3 91 76.9
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 3.7e-37 157.9 91 82.4
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 4.8e-37 157.5 91 81.3
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.8e-37 157.5 91 82.4
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 6.3e-37 157.1 91 80.2
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 8.2e-37 156.8 91 79.1
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 8.2e-37 156.8 90 76.7
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.1e-36 156.4 89 83.1
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.4e-36 156.0 91 79.1
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 1.8e-36 155.6 91 79.1
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 1.8e-36 155.6 91 81.3
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.8e-36 155.6 91 78.0
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 1.8e-36 155.6 90 75.6
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 1.8e-36 155.6 90 81.1
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 2.4e-36 155.2 91 81.3
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 3.1e-36 154.8 91 74.7
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 3.1e-36 154.8 91 79.1
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 4.1e-36 154.5 91 78.0
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 5.3e-36 154.1 91 79.1
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 7.0e-36 153.7 90 74.4
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 9.1e-36 153.3 91 78.0
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 9.1e-36 153.3 90 84.4
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 9.1e-36 153.3 91 81.3
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 1.6e-35 152.5 89 78.7
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 1.6e-35 152.5 91 78.0
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 4.5e-35 151.0 91 80.2
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 5.9e-35 150.6 91 79.1
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 7.7e-35 150.2 91 78.0
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 1.0e-34 149.8 91 78.0
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 1.0e-34 149.8 89 78.7
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 1.0e-34 149.8 91 74.7
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 1.0e-34 149.8 91 74.7
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 1.0e-34 149.8 91 75.8
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 1.3e-34 149.4 91 75.8
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 1.7e-34 149.1 91 76.9
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 1.7e-34 149.1 91 78.0
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 2.2e-34 148.7 91 75.8
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 2.2e-34 148.7 91 75.8
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 2.2e-34 148.7 91 75.8
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 2.9e-34 148.3 92 80.4
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 2.9e-34 148.3 92 80.4
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 2.9e-34 148.3 91 71.4
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 3.8e-34 147.9 92 76.1
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 3.8e-34 147.9 92 76.1
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 3.8e-34 147.9 91 74.7
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 3.8e-34 147.9 91 75.8
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 3.8e-34 147.9 91 76.9
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 3.8e-34 147.9 91 75.8
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 5.0e-34 147.5 91 74.7
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 5.0e-34 147.5 91 75.8
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 5.0e-34 147.5 91 74.7
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 6.5e-34 147.1 91 75.8
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 8.5e-34 146.7 91 76.9
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 1.1e-33 146.4 92 75.0
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.1e-33 146.4 91 74.7
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.1e-33 146.4 91 74.7
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.1e-33 146.4 89 76.4
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.1e-33 146.4 89 76.4
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.1e-33 146.4 89 76.4
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 1.1e-33 146.4 91 73.6
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.5e-33 146.0 89 76.4
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 1.9e-33 145.6 92 73.9
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 1.9e-33 145.6 91 72.5
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 1.9e-33 145.6 92 75.0
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 1.9e-33 145.6 92 73.9
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 1.9e-33 145.6 88 77.3
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 2.5e-33 145.2 88 77.3
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 3.2e-33 144.8 91 74.7
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 3.2e-33 144.8 91 72.5
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 4.2e-33 144.4 88 76.1
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 5.5e-33 144.1 91 78.0
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 9.4e-33 143.3 91 74.7
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.6e-32 142.5 91 74.7
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 1.6e-32 142.5 91 73.6
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 1.6e-32 142.5 84 81.0
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 2.1e-32 142.1 90 73.3
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 3.6e-32 141.4 90 72.2
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 6.1e-32 140.6 91 73.6
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 1.0e-31 139.8 91 69.2
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 1.4e-31 139.4 91 70.3
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 2.3e-31 138.7 81 81.5
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 3.0e-31 138.3 92 68.5
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 4.0e-31 137.9 91 71.4
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 1.2e-30 136.3 88 73.9
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 2.0e-30 135.6 91 70.3
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 2.0e-30 135.6 110 60.9
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 4.4e-30 134.4 92 66.3
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 4.4e-30 134.4 92 66.3
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 4.4e-30 134.4 92 66.3
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 5.7e-30 134.0 92 66.3
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 7.5e-30 133.7 92 65.2
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 1.7e-29 132.5 91 67.0
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 1.7e-29 132.5 90 70.0
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 4.8e-29 131.0 83 74.7
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 8.2e-29 130.2 92 64.1
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 1.4e-28 129.4 81 75.3
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.8e-28 129.0 91 72.5
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 5.3e-28 127.5 81 72.8
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 9.1e-28 126.7 126 51.6
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 2.7e-27 125.2 92 64.1
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.5e-27 124.4 91 70.3
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 7.7e-27 123.6 92 65.2
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 5.5e-25 117.5 91 64.8
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 7.2e-25 117.1 78 69.2
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 9.4e-25 116.7 101 59.4
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 1.8e-23 112.5 94 60.6
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 1.4e-20 102.8 89 56.2
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.4e-20 100.9 61 75.4
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.4e-20 100.9 61 75.4
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 1.1e-17 93.2 83 49.4
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 2.5e-17 92.0 59 67.8
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 7.2e-17 90.5 89 51.7
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 8.0e-16 87.0 89 48.3
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 1.4e-15 86.3 49 79.6
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 1.1e-09 66.6 91 38.5
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 1.1e-09 66.6 88 40.9
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 1.5e-09 66.2 91 41.8
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 8.0e-08 60.5 90 36.7
MCO15G566 Micromonas commoda HOM05D005446 ORTHO05D006597 3.0e-07 58.5 90 34.4


User provided reference genes

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