Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p001838 Quercus lobata HOM05D006697 ORTHO05D008161 1.5e-141 506.1 255 100.0
QL11p001773 Quercus lobata HOM05D006697 ORTHO05D008161 1.3e-140 503.1 255 99.2
CiPaw.04G009300 Carya illinoinensis HOM05D006697 ORTHO05D008161 1.4e-118 429.9 255 83.1
Haze_13956 Corylus avellana HOM05D006697 ORTHO05D008161 1.2e-106 390.2 234 83.8
Potri.001G377100 Populus trichocarpa HOM05D006697 ORTHO05D008161 2.7e-106 389.0 248 78.2
TWI12G1402 Tripterygium wilfordii HOM05D006697 ORTHO05D008161 4.4e-104 381.7 248 73.8
Dinv22109 Davidia involucrata HOM05D006697 ORTHO05D008161 3.7e-103 378.6 248 75.0
Atru.chr13.2506 Acer truncatum HOM05D006697 ORTHO05D008161 1.8e-102 376.3 248 73.4
Atru.chr13.2494 Acer truncatum HOM05D006697 ORTHO05D008161 5.3e-102 374.8 248 73.0
Hma1.2p1_0417F.1_g148910 Hydrangea macrophylla HOM05D006697 ORTHO05D008161 5.3e-102 374.8 230 78.7
Lj5C630T5 Lonicera japonica HOM05D006697 ORTHO05D008161 5.3e-102 374.8 226 79.2
GSVIVG01036291001 Vitis vinifera HOM05D006697 ORTHO05D008161 7.7e-101 370.9 220 81.4
Sabra16G0248400 Salix brachista HOM05D006697 ORTHO05D008161 1.3e-100 370.2 251 74.5
Aqoxy7G01951 Aquilegia oxysepala HOM05D006697 ORTHO05D008161 7.2e-99 364.4 248 71.8
HanXRQChr08g0227531 Helianthus annuus HOM05D006697 ORTHO05D008161 2.1e-98 362.8 236 73.7
SGA_v2.0_scaffold24G10647 Striga asiatica HOM05D006697 ORTHO05D008161 8.0e-98 360.9 232 72.0
Migut.C01379 Erythranthe guttata HOM05D006697 ORTHO05D008161 1.8e-97 359.8 240 70.8
COL.COLO4_05203 Corchorus olitorius HOM05D006697 ORTHO05D008161 2.3e-97 359.4 248 71.4
Actinidia03526 Actinidia chinensis HOM05D006697 ORTHO05D008161 8.8e-97 357.5 252 70.2
AUR62038532 Chenopodium quinoa HOM05D006697 ORTHO05D008161 1.1e-96 357.1 249 70.3
Lj7A235T22 Lonicera japonica HOM05D006697 ORTHO05D008161 1.1e-96 357.1 220 78.6
AUR62013379 Chenopodium quinoa HOM05D006697 ORTHO05D008161 4.4e-96 355.1 249 69.5
Thecc.08G178500 Theobroma cacao HOM05D006697 ORTHO05D008161 9.7e-96 354.0 250 70.8
Gorai.009G352800 Gossypium raimondii HOM05D006697 ORTHO05D008161 1.3e-95 353.6 249 71.5
Gohir.D05G329400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 1.7e-95 353.2 249 71.5
Ciclev10024137m.g Citrus clementina HOM05D006697 ORTHO05D008161 2.8e-95 352.4 220 77.3
FvH4_2g00851 Fragaria vesca HOM05D006697 ORTHO05D008161 8.2e-95 350.9 238 72.3
Sc23g0000070 Simmondsia chinensis HOM05D006697 ORTHO05D008161 1.1e-94 350.5 223 75.8
CsaV3_2G033200 Cucumis sativus L. HOM05D006697 ORTHO05D008161 1.4e-94 350.1 248 70.2
MBI04_g46123_MAGBIO Magnolia biondii HOM05D006697 ORTHO05D008161 3.1e-94 349.0 228 75.0
TPR.G29429 Trifolium pratense HOM05D006697 ORTHO05D008161 4.1e-94 348.6 239 69.5
Duzib213G0772 Durio zibethinus HOM05D006697 ORTHO05D008161 5.3e-94 348.2 243 72.4
Lj3g0000289 Lotus japonicus HOM05D006697 ORTHO05D008161 5.3e-94 348.2 245 70.2
PSO170G3180 Papaver somniferum HOM05D006697 ORTHO05D008161 5.3e-94 348.2 248 68.5
Ah.05g170350 Amaranthus hybridus HOM05D006697 ORTHO05D008161 1.2e-93 347.1 226 73.0
FAN27G1710 Fragaria x ananassa HOM05D006697 ORTHO05D008161 2.6e-93 345.9 238 71.4
EL10Ac1g01267 Beta vulgaris HOM05D006697 ORTHO05D008161 5.9e-93 344.7 226 72.1
PGR044G1078 Punica granatum HOM05D006697 ORTHO05D008161 5.9e-93 344.7 225 74.2
RcHm_v2.0_Chr6g0251241 Rosa chinensis HOM05D006697 ORTHO05D008161 7.7e-93 344.4 238 70.6
CANSAT21G1464 Cannabis sativa HOM05D006697 ORTHO05D008161 1.7e-92 343.2 227 73.1
CANSAT21G1945 Cannabis sativa HOM05D006697 ORTHO05D008161 1.7e-92 343.2 227 73.1
MD05G1004600 Malus domestica HOM05D006697 ORTHO05D008161 1.7e-92 343.2 234 73.5
ClCG11G008450 Citrullus lanatus HOM05D006697 ORTHO05D008161 2.2e-92 342.8 248 69.0
Sed0014406 Sechium edule HOM05D006697 ORTHO05D008161 2.2e-92 342.8 236 72.0
Cc10_g08640 Coffea canephora HOM05D006697 ORTHO05D008161 4.2e-91 338.6 220 75.0
PGSC0003DMG400033140 Solanum tuberosum HOM05D006697 ORTHO05D008161 4.2e-91 338.6 241 66.8
VMungo1127G1290 Vigna mungo HOM05D006697 ORTHO05D008161 1.6e-90 336.7 239 69.0
Manes.02G201500 Manihot esculenta HOM05D006697 ORTHO05D008161 2.7e-90 335.9 248 71.0
Psat1g020920 Pisum sativum HOM05D006697 ORTHO05D008161 3.6e-90 335.5 245 66.1
Sopen06g023040 Solanum pennellii HOM05D006697 ORTHO05D008161 1.0e-89 334.0 241 66.0
Phvul.011G017400 Phaseolus vulgaris HOM05D006697 ORTHO05D008161 2.3e-89 332.8 239 67.8
Glyma.11G110500 Glycine max HOM05D006697 ORTHO05D008161 4.0e-89 332.0 224 71.0
PGR044G1872 Punica granatum HOM05D006697 ORTHO05D008161 4.0e-89 332.0 231 70.1
THA.LOC104814608 Tarenaya hassleriana HOM05D006697 ORTHO05D008161 8.8e-89 330.9 224 71.4
Solyc06g064560.4 Solanum lycopersicum HOM05D006697 ORTHO05D008161 1.5e-88 330.1 242 66.1
arahy.Tifrunner.gnm1.ann1.D2QDKL Arachis hypogaea HOM05D006697 ORTHO05D008161 2.6e-88 329.3 238 68.1
Ca_26167_v3 Cicer arietinum L. HOM05D006697 ORTHO05D008161 2.6e-88 329.3 235 68.5
arahy.Tifrunner.gnm1.ann1.6HI5DG Arachis hypogaea HOM05D006697 ORTHO05D008161 3.4e-88 328.9 244 66.4
arahy.Tifrunner.gnm1.ann1.L3LJ1W Arachis hypogaea HOM05D006697 ORTHO05D008161 3.4e-88 328.9 244 66.4
Cpa.g.sc21.84 Carica papaya HOM05D006697 ORTHO05D008161 7.5e-88 327.8 232 67.2
Medtr2g010410 Medicago truncatula HOM05D006697 ORTHO05D008161 9.7e-88 327.4 246 65.9
vmacro17835 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 1.8e-86 323.2 236 69.9
Peaxi162Scf00818g00536 Petunia axillaris HOM05D006697 ORTHO05D008161 2.4e-86 322.8 228 68.0
vmacro14431 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 5.3e-86 321.6 272 63.6
Os05g0588200 Oryza sativa ssp. japonica HOM05D006697 ORTHO05D008161 1.6e-85 320.1 233 70.0
Aa31LG2G660 Aethionema arabicum HOM05D006697 ORTHO05D008161 3.5e-85 318.9 256 63.7
Prupe.8G007100 Prunus persica HOM05D006697 ORTHO05D008161 1.3e-84 317.0 249 67.9
CAN.G14.56 Capsicum annuum HOM05D006697 ORTHO05D008161 2.2e-84 316.2 219 69.9
Nn8g39331 Nelumbo nucifera HOM05D006697 ORTHO05D008161 6.5e-84 314.7 248 64.9
FAN20G2680 Fragaria x ananassa HOM05D006697 ORTHO05D008161 1.1e-83 313.9 221 70.6
SalBow7G2072 Salvia bowleyana HOM05D006697 ORTHO05D008161 4.2e-83 312.0 293 56.3
ECA247G0072 Erigeron canadensis HOM05D006697 ORTHO05D008161 9.4e-83 310.8 225 68.9
Thhalv10008579m.g Eutrema salsugineum HOM05D006697 ORTHO05D008161 9.4e-83 310.8 249 61.8
Sp1g11350 Schrenkiella parvula HOM05D006697 ORTHO05D008161 2.1e-82 309.7 249 61.4
HPP92_021529 Vanilla planifolia HOM05D006697 ORTHO05D008161 2.1e-82 309.7 224 67.9
HPP92_021490 Vanilla planifolia HOM05D006697 ORTHO05D008161 3.6e-82 308.9 224 67.9
AL1G24400 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 4.7e-82 308.5 236 64.8
Hund16916 Selenicereus undatus HOM05D006697 ORTHO05D008161 1.0e-81 307.4 228 68.0
CARHR013100 Cardamine hirsuta HOM05D006697 ORTHO05D008161 2.3e-81 306.2 251 61.8
Carub.0001s1251 Capsella rubella HOM05D006697 ORTHO05D008161 2.0e-80 303.1 236 63.1
AT1G12790 Arabidopsis thaliana HOM05D006697 ORTHO05D008161 2.6e-80 302.8 250 61.6
Zm00001eb345090 Zea mays HOM05D006697 ORTHO05D008161 1.3e-79 300.4 233 64.8
TAR625G0361 Trochodendron aralioides HOM05D006697 ORTHO05D008161 4.8e-79 298.5 208 70.2
SGA_v2.0_scaffold147G36299 Striga asiatica HOM05D006697 ORTHO05D008161 1.1e-78 297.4 226 64.2
Lj7C240T16 Lonicera japonica HOM05D006697 ORTHO05D008161 1.6e-77 293.5 221 68.8
A06p08910 Brassica napus HOM05D000776 ORTHO05D008161 7.7e-77 291.2 241 58.9
Nitab4.5_0002654g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 1.3e-76 290.4 249 59.8
MD05G1003900 Malus domestica HOM05D006697 ORTHO05D008161 3.8e-76 288.9 190 74.7
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 8.6e-76 287.7 229 61.6
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 8.9e-73 277.7 236 64.8
DCAR_016528 Daucus carota HOM05D006697 ORTHO05D008161 1.2e-72 277.3 184 71.2
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 5.7e-72 275.0 235 64.3
BcaC05g25157 Brassica carinata HOM05D000776 ORTHO05D008161 7.5e-72 274.6 236 59.7
C05p10520 Brassica napus HOM05D000776 ORTHO05D008161 7.5e-72 274.6 236 59.7
Glyma.12G014500 Glycine max HOM05D006697 ORTHO05D008161 1.1e-70 270.8 201 66.2
BolC5t29798H Brassica oleracea HOM05D000776 ORTHO05D008161 3.2e-70 269.2 240 58.8
BcaC05g25114 Brassica carinata HOM05D006697 ORTHO05D008161 5.9e-69 265.0 237 57.8
Rhsim08G0116200 Rhododendron simsii HOM05D006697 ORTHO05D008161 2.3e-68 263.1 264 56.8
Nitab4.5_0010319g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 8.0e-66 254.6 240 57.9
CAN.G27.3 Capsicum annuum HOM05D006697 ORTHO05D008161 4.0e-65 252.3 195 63.1
SHI16724 Sapria himalayana HOM05D006697 ORTHO05D008161 1.2e-64 250.8 286 52.1
Gohir.A05G328400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 7.8e-61 238.0 173 68.8
Eucgr.F04072 Eucalyptus grandis HOM05D006697 ORTHO05D008161 1.0e-60 237.7 158 74.1
ATR0083G058 Amborella trichopoda HOM05D006697 ORTHO05D008161 1.3e-60 237.3 183 63.4
Lsat_1_v5_gn_1_24901 Lactuca sativa HOM05D006697 ORTHO05D008161 1.7e-60 236.9 163 69.9
arahy.Tifrunner.gnm1.ann1.3DZ399 Arachis hypogaea HOM05D006697 ORTHO05D008161 1.3e-55 220.7 244 52.0
Lalb_Chr01g0000751 Lupinus albus HOM05D006697 ORTHO05D008161 3.5e-53 212.6 148 67.6
arahy.Tifrunner.gnm1.ann1.9U8FPX Arachis hypogaea HOM05D006697 ORTHO05D008161 3.9e-52 209.1 216 54.2
MELO3C029791.2 Cucumis melo HOM05D006697 ORTHO05D008161 6.6e-52 208.4 160 68.8
MSTRG.1598 Avicennia marina HOM05D006697 ORTHO05D008161 1.4e-46 190.7 119 73.9
unitig_32.g11220 Utricularia gibba HOM05D000486 ORTHO05D000375 1.0e-44 184.5 170 57.6
unitig_32.g11211 Utricularia gibba HOM05D006697 ORTHO05D008161 5.1e-44 182.2 131 67.9
arahy.Tifrunner.gnm1.ann1.K2UT7U Arachis hypogaea HOM05D006697 ORTHO05D008161 1.1e-41 174.5 121 71.1
SMO119G0513 Selaginella moellendorffii HOM05D006697 ORTHO05D008161 6.0e-37 158.7 218 37.6
arahy.Tifrunner.gnm1.ann1.GZG3VH Arachis hypogaea HOM05D006697 ORTHO05D008161 5.1e-36 155.6 150 54.7
AL1G24230 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 2.0e-32 143.7 131 57.3
Mapoly0068s0032 Marchantia polymorpha HOM05D006697 ORTHO05D008161 2.1e-29 133.7 221 32.6
RcHm_v2.0_Chr6g0275321 Rosa chinensis HOM05D006697 ORTHO05D008161 5.3e-25 119.0 96 60.4
Lalb_Chr01g0000761 Lupinus albus HOM05D006697 ORTHO05D008161 2.2e-23 113.6 78 67.9
arahy.Tifrunner.gnm1.ann1.D8HQTE Arachis hypogaea HOM05D006697 ORTHO05D008161 1.2e-13 81.3 65 58.5
Medtr2g451120 Medicago truncatula HOM05D006697 ORTHO05D008161 3.7e-10 69.7 90 43.3
Lj7A241T18 Lonicera japonica HOM05D006697 ORTHO05D008161 1.4e-09 67.8 43 72.1
FAN20G1527 Fragaria x ananassa HOM05D006697 ORTHO05D205377 2.9e-07 60.1 76 46.1


User provided reference genes

Program Settings