Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p059869 Quercus lobata HOM05D003624 ORTHO05D004188 3.5e-144 515.0 271 100.0
QL06p008449 Quercus lobata HOM05D003624 ORTHO05D004188 3.4e-123 445.3 313 77.3
QL09p007395 Quercus lobata HOM05D003624 ORTHO05D004188 3.3e-118 428.7 315 75.6
QL93p0214_0025 Quercus lobata HOM05D003624 ORTHO05D004188 3.3e-118 428.7 315 75.6
CiPaw.01G286800 Carya illinoinensis HOM05D003624 ORTHO05D004188 6.7e-95 351.3 318 64.2
Haze_15559 Corylus avellana HOM05D003624 ORTHO05D004188 8.2e-93 344.4 316 63.0
CANSAT54G1653 Cannabis sativa HOM05D003624 ORTHO05D004188 8.8e-87 324.3 322 58.4
Prupe.2G234600 Prunus persica HOM05D003624 ORTHO05D004188 2.0e-86 323.2 320 58.8
Phvul.008G264800 Phaseolus vulgaris HOM05D003624 ORTHO05D004188 3.3e-86 322.4 323 57.9
ClCG05G013440 Citrullus lanatus HOM05D003624 ORTHO05D004188 4.4e-86 322.0 322 57.1
Phvul.003G195200 Phaseolus vulgaris HOM05D003624 ORTHO05D004188 4.4e-86 322.0 326 57.7
Duzib114G1042 Durio zibethinus HOM05D003624 ORTHO05D004188 1.3e-85 320.5 319 57.4
ClCG01G013570 Citrullus lanatus HOM05D003624 ORTHO05D004188 2.8e-85 319.3 322 57.8
Psat2g013120 Pisum sativum HOM05D003624 ORTHO05D004188 2.8e-85 319.3 325 58.2
Lalb_Chr03g0040441 Lupinus albus HOM05D003624 ORTHO05D004188 3.7e-85 318.9 326 58.6
Prupe.4G141300 Prunus persica HOM05D003624 ORTHO05D004188 1.4e-84 317.0 319 58.3
Sed0019448 Sechium edule HOM05D003624 ORTHO05D004188 1.4e-84 317.0 324 57.4
Manes.07G115700 Manihot esculenta HOM05D003624 ORTHO05D004188 1.8e-84 316.6 327 57.5
CsaV3_3G027090 Cucumis sativus L. HOM05D003624 ORTHO05D004188 2.4e-84 316.2 324 55.6
MELO3C014877.2 Cucumis melo HOM05D003624 ORTHO05D004188 7.0e-84 314.7 324 55.6
Ca_06309_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 9.1e-84 314.3 324 57.7
Dinv27204 Davidia involucrata HOM05D003624 ORTHO05D004188 1.2e-83 313.9 325 56.3
Lalb_Chr04g0248651 Lupinus albus HOM05D003624 ORTHO05D004188 1.5e-83 313.5 326 57.7
Prupe.6G266400 Prunus persica HOM05D003624 ORTHO05D004188 2.0e-83 313.2 314 58.3
Hma1.2p1_0493F.1_g164850 Hydrangea macrophylla HOM05D003624 ORTHO05D004188 7.7e-83 311.2 326 55.2
VMungo0647G0302 Vigna mungo HOM05D003624 ORTHO05D004188 1.0e-82 310.8 325 57.5
Gohir.A10G218400 Gossypium hirsutum HOM05D003624 ORTHO05D004188 1.1e-81 307.4 321 54.8
Gohir.D10G228000 Gossypium hirsutum HOM05D003624 ORTHO05D004188 2.5e-81 306.2 321 54.5
Gorai.011G260400 Gossypium raimondii HOM05D003624 ORTHO05D004188 2.5e-81 306.2 321 54.5
Potri.010G204900 Populus trichocarpa HOM05D003624 ORTHO05D004188 2.5e-81 306.2 327 56.0
Oeu048253.2 Olea europaea HOM05D003624 ORTHO05D004188 2.1e-80 303.1 330 54.5
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 2.1e-80 303.1 314 54.1
Carub.0001s4395 Capsella rubella HOM05D003624 ORTHO05D004188 2.7e-80 302.8 339 53.1
Cc04_g09670 Coffea canephora HOM05D003624 ORTHO05D004188 3.6e-80 302.4 317 55.5
Glyma.14G026000 Glycine max HOM05D003624 ORTHO05D004188 1.0e-79 300.8 325 55.1
CSS0018661 Camellia sinensis var. sinensis HOM05D003624 ORTHO05D004188 2.3e-79 299.7 326 55.8
Cpa.g.sc1.400 Carica papaya HOM05D003624 ORTHO05D004188 3.9e-79 298.9 334 54.5
AL1G63460 Arabidopsis lyrata HOM05D003624 ORTHO05D004188 5.2e-79 298.5 339 52.5
Glyma.02G288800 Glycine max HOM05D003624 ORTHO05D004188 5.2e-79 298.5 325 54.5
Potri.008G055300 Populus trichocarpa HOM05D003624 ORTHO05D004188 1.1e-78 297.4 324 54.9
AT1G55460 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 1.5e-78 297.0 338 52.7
RcHm_v2.0_Chr1g0367021 Rosa chinensis HOM05D003624 ORTHO05D004188 2.0e-78 296.6 322 56.2
Sc10g0001520 Simmondsia chinensis HOM05D003624 ORTHO05D004188 2.0e-78 296.6 324 54.6
Lj3g0027074 Lotus japonicus HOM05D003624 ORTHO05D004188 2.6e-78 296.2 326 55.2
LjContig00310g0027848 Lotus japonicus HOM05D003624 ORTHO05D004188 5.7e-78 295.0 325 56.0
Peaxi162Scf00015g10126 Petunia axillaris HOM05D003624 ORTHO05D004188 5.7e-78 295.0 325 53.2
Duzib106G0342 Durio zibethinus HOM05D003624 ORTHO05D004188 7.4e-78 294.7 316 54.7
Eucgr.C04375 Eucalyptus grandis HOM05D003624 ORTHO05D004188 9.7e-78 294.3 321 55.1
Peaxi162Scf00001g00045 Petunia axillaris HOM05D003624 ORTHO05D004188 9.7e-78 294.3 325 52.6
Nitab4.5_0001992g0010 Nicotiana tabacum HOM05D003624 ORTHO05D004188 1.3e-77 293.9 335 52.5
FvH4_7g22390 Fragaria vesca HOM05D003624 ORTHO05D004188 2.2e-77 293.1 319 55.5
FAN06G1965 Fragaria x ananassa HOM05D003624 ORTHO05D004188 2.2e-77 293.1 319 55.5
FAN06G4942 Fragaria x ananassa HOM05D003624 ORTHO05D004188 2.2e-77 293.1 319 55.5
TPR.G29126 Trifolium pratense HOM05D003624 ORTHO05D004188 2.8e-77 292.7 325 54.8
Atru.chr4.2829 Acer truncatum HOM05D003624 ORTHO05D004188 3.7e-77 292.4 326 52.1
Aa31LG10G790 Aethionema arabicum HOM05D003624 ORTHO05D004188 4.8e-77 292.0 339 51.3
Nn6g34375 Nelumbo nucifera HOM05D003624 ORTHO05D004188 1.1e-76 290.8 318 53.8
Nitab4.5_0006489g0020 Nicotiana tabacum HOM05D003624 ORTHO05D004188 1.8e-76 290.0 329 52.9
Cc07_g19190 Coffea canephora HOM05D003624 ORTHO05D004188 2.4e-76 289.7 319 54.9
Sp1g41070 Schrenkiella parvula HOM05D003624 ORTHO05D004188 4.1e-76 288.9 343 50.4
HanXRQChr08g0234751 Helianthus annuus HOM05D003624 ORTHO05D004188 1.2e-75 287.3 321 53.3
MBI12_g10423_MAGBIO Magnolia biondii HOM05D003624 ORTHO05D004188 1.2e-75 287.3 324 52.2
Medtr5g092130 Medicago truncatula HOM05D003624 ORTHO05D004188 1.2e-75 287.3 326 54.9
CARHR045130 Cardamine hirsuta HOM05D003624 ORTHO05D004188 1.6e-75 287.0 332 51.5
Thhalv10011527m.g Eutrema salsugineum HOM05D003624 ORTHO05D004188 1.6e-75 287.0 341 51.3
Ciclev10005088m.g Citrus clementina HOM05D003624 ORTHO05D004188 2.0e-75 286.6 332 52.7
Rhsim05G0153700 Rhododendron simsii HOM05D003624 ORTHO05D004188 2.0e-75 286.6 322 54.3
Rhsim03G0131100 Rhododendron simsii HOM05D003624 ORTHO05D004188 2.6e-75 286.2 322 54.3
MD01G1133500 Malus domestica HOM05D003624 ORTHO05D004188 3.5e-75 285.8 302 56.3
DCAR_001936 Daucus carota HOM05D003624 ORTHO05D004188 7.7e-75 284.6 324 53.4
Lj3g0001422 Lotus japonicus HOM05D003624 ORTHO05D004188 1.3e-74 283.9 327 54.1
arahy.Tifrunner.gnm1.ann1.2R0TK7 Arachis hypogaea HOM05D003624 ORTHO05D004188 2.9e-74 282.7 329 54.7
Thecc.10G043100 Theobroma cacao HOM05D003624 ORTHO05D004188 2.9e-74 282.7 318 52.8
vmacro17110 Vaccinium macrocarpon HOM05D003624 ORTHO05D004188 5.0e-74 282.0 323 53.6
THA.LOC104815670 Tarenaya hassleriana HOM05D003624 ORTHO05D004188 6.5e-74 281.6 335 52.2
Lj2C36T16 Lonicera japonica HOM05D003624 ORTHO05D004188 1.5e-73 280.4 323 52.3
Sabra08G0039900 Salix brachista HOM05D003624 ORTHO05D004188 1.5e-73 280.4 324 53.4
CAN.G862.53 Capsicum annuum HOM05D003624 ORTHO05D004188 1.9e-73 280.0 322 52.5
Aqoxy2G03154 Aquilegia oxysepala HOM05D003624 ORTHO05D004188 2.5e-73 279.6 332 50.9
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 3.2e-73 279.3 334 53.3
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 4.2e-73 278.9 325 51.7
PSO339G0082 Papaver somniferum HOM05D003624 ORTHO05D004188 5.5e-73 278.5 334 53.0
TAR636G1411 Trochodendron aralioides HOM05D003624 ORTHO05D004188 5.5e-73 278.5 325 51.1
CDE04G0801 Ceratophyllum demersum HOM05D003624 ORTHO05D004188 9.4e-73 277.7 322 51.2
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 9.4e-73 277.7 319 53.3
unitig_749.g13772 Utricularia gibba HOM05D003624 ORTHO05D004188 1.2e-72 277.3 328 52.4
A05p17470 Brassica napus HOM05D003624 ORTHO05D004188 2.1e-72 276.6 320 50.9
BraA05t20642Z Brassica rapa HOM05D003624 ORTHO05D004188 2.1e-72 276.6 320 50.9
AUR62031721 Chenopodium quinoa HOM05D003624 ORTHO05D004188 2.1e-72 276.6 327 51.4
Lsat_1_v5_gn_3_22041 Lactuca sativa HOM05D003624 ORTHO05D004188 2.1e-72 276.6 316 52.2
Prupe.1G588200 Prunus persica HOM05D003624 ORTHO05D004188 2.1e-72 276.6 286 56.6
EL10Ac2g04634 Beta vulgaris HOM05D003624 ORTHO05D004188 1.8e-71 273.5 324 50.3
ATR0691G007 Amborella trichopoda HOM05D003624 ORTHO05D004188 2.3e-71 273.1 322 50.0
HPP92_019187 Vanilla planifolia HOM05D003624 ORTHO05D004188 5.2e-71 271.9 338 49.4
AUR62032608 Chenopodium quinoa HOM05D003624 ORTHO05D004188 2.6e-70 269.6 321 51.1
BcaC08g44198 Brassica carinata HOM05D003624 ORTHO05D004188 3.3e-70 269.2 322 50.0
BolC6t36805H Brassica oleracea HOM05D003624 ORTHO05D004188 3.3e-70 269.2 322 50.0
C06p16060 Brassica napus HOM05D003624 ORTHO05D004188 4.4e-70 268.9 322 50.0
Ah.16g102270 Amaranthus hybridus HOM05D003624 ORTHO05D004188 5.7e-70 268.5 325 49.8
ECA232G3640 Erigeron canadensis HOM05D003624 ORTHO05D004188 5.7e-70 268.5 319 50.8
TWI60G1571 Tripterygium wilfordii HOM05D003624 ORTHO05D004188 5.7e-70 268.5 320 50.3
FAN01G2477 Fragaria x ananassa HOM05D003624 ORTHO05D004188 9.7e-70 267.7 304 53.3
FAN03G2437 Fragaria x ananassa HOM05D003624 ORTHO05D004188 1.3e-69 267.3 319 52.0
CSS0014624 Camellia sinensis var. sinensis HOM05D003624 ORTHO05D004188 3.7e-69 265.8 312 53.5
FAN01G1443 Fragaria x ananassa HOM05D003624 ORTHO05D004188 8.2e-69 264.6 319 52.0
COL.COLO4_34579 Corchorus olitorius HOM05D003624 ORTHO05D004188 1.4e-68 263.8 314 48.7
Peaxi162Scf00015g01215 Petunia axillaris HOM05D003624 ORTHO05D004188 2.4e-68 263.1 300 52.3
Peaxi162Scf00271g00059 Petunia axillaris HOM05D003624 ORTHO05D004188 2.4e-68 263.1 300 52.3
FAN10G3681 Fragaria x ananassa HOM05D003624 ORTHO05D004188 7.0e-68 261.5 304 52.3
COL.COLO4_15033 Corchorus olitorius HOM05D003624 ORTHO05D004188 1.6e-67 260.4 273 55.3
Sopen05g032980 Solanum pennellii HOM05D003624 ORTHO05D004188 2.7e-67 259.6 326 49.7
PGSC0003DMG400023427 Solanum tuberosum HOM05D003624 ORTHO05D004188 3.5e-67 259.2 326 50.0
BcaB02g10822 Brassica carinata HOM05D003624 ORTHO05D004188 4.5e-67 258.8 321 48.6
BcaB04g16957 Brassica carinata HOM05D003624 ORTHO05D004188 1.3e-66 257.3 329 48.0
Solyc05g054500.1 Solanum lycopersicum HOM05D003624 ORTHO05D004188 1.3e-66 257.3 326 49.4
Aqoxy6G02821 Aquilegia oxysepala HOM05D003624 ORTHO05D004188 2.5e-65 253.1 314 49.0
A08p00650 Brassica napus HOM05D003624 ORTHO05D004188 7.2e-65 251.5 314 48.7
BraA08t32123Z Brassica rapa HOM05D003624 ORTHO05D004188 7.2e-65 251.5 314 48.7
Nn3g21232 Nelumbo nucifera HOM05D003624 ORTHO05D004188 2.7e-64 249.6 297 50.8
Psat2g013800 Pisum sativum HOM05D003624 ORTHO05D004188 3.6e-64 249.2 272 55.1
BcaC01g01521 Brassica carinata HOM05D003624 ORTHO05D004188 3.0e-63 246.1 322 47.8
BolSC126t60220H Brassica oleracea HOM05D003624 ORTHO05D004188 3.0e-63 246.1 322 47.8
CDE07G1603 Ceratophyllum demersum HOM05D003624 ORTHO05D004188 1.5e-62 243.8 295 49.8
C03p92710 Brassica napus HOM05D003624 ORTHO05D004188 1.3e-61 240.7 324 47.2
Mapoly0087s0013 Marchantia polymorpha HOM05D003624 ORTHO05D004188 3.7e-61 239.2 332 44.9
Pp3c24_1610 Physcomitrium patens HOM05D003624 ORTHO05D004188 8.3e-61 238.0 331 44.4
Zm00001eb208070 Zea mays HOM05D003624 ORTHO05D004188 5.4e-60 235.3 349 44.1
Zm00001eb232160 Zea mays HOM05D003624 ORTHO05D004188 9.1e-60 234.6 354 43.2
GSVIVG01008269001 Vitis vinifera HOM05D003624 ORTHO05D004188 1.5e-57 227.3 279 51.3
Nitab4.5_0000578g0060 Nicotiana tabacum HOM05D003624 ORTHO05D004188 2.3e-55 219.9 306 44.8
AL185U10020 Arabidopsis lyrata HOM05D003624 ORTHO05D004188 4.0e-55 219.2 340 43.5
SMO358G0194 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 8.9e-55 218.0 316 41.8
Os03g0570300 Oryza sativa ssp. japonica HOM05D003624 ORTHO05D004188 1.5e-54 217.2 367 41.1
Rhsim05G0154000 Rhododendron simsii HOM05D003624 ORTHO05D004188 6.3e-53 211.8 294 47.3
SMO142G0061 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 9.2e-52 208.0 309 41.1
AagrBONN_evm.TU.Sc2ySwM_368.2590 Anthoceros agrestis HOM05D003624 ORTHO05D004188 1.2e-51 207.6 334 42.2
SEGI_37535 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 7.8e-51 204.9 342 40.9
AT5G51795 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 1.5e-49 200.7 307 44.3
Lj8P413T16 Lonicera japonica HOM05D003624 ORTHO05D004188 1.9e-49 200.3 305 46.2
Atru.chr11.11 Acer truncatum HOM05D003624 ORTHO05D004188 2.1e-48 196.8 295 42.4
Ca_20539_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 2.8e-48 196.4 177 62.1
Ca_06298_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 4.0e-47 192.6 244 52.0
Nitab4.5_0004476g0070 Nicotiana tabacum HOM05D003624 ORTHO05D004188 1.2e-46 191.0 300 43.7
Actinidia02952 Actinidia chinensis HOM05D003624 ORTHO05D004188 2.4e-44 183.3 201 56.7
DCAR_027848 Daucus carota HOM05D003624 ORTHO05D004188 2.4e-44 183.3 329 38.9
CAN.G1013.23 Capsicum annuum HOM05D003624 ORTHO05D004188 1.2e-43 181.0 324 38.6
Duzib106G1275 Durio zibethinus HOM05D003624 ORTHO05D004188 3.0e-42 176.4 187 55.1
MD07G1197800 Malus domestica HOM05D003624 ORTHO05D004188 4.3e-41 172.6 198 56.1
EL10Ac6g13458 Beta vulgaris HOM05D003624 ORTHO05D004188 4.0e-39 166.0 321 37.1
arahy.Tifrunner.gnm1.ann1.Y1WZEQ Arachis hypogaea HOM05D003624 ORTHO05D004188 1.5e-38 164.1 209 53.1
unitig_26.g9714 Utricularia gibba HOM05D001237 ORTHO05D001827 7.5e-38 161.8 118 71.2
RcHm_v2.0_Chr4g0406621 Rosa chinensis HOM05D003624 ORTHO05D004188 2.1e-35 153.7 223 48.9
Carub.0001s4393 Capsella rubella HOM05D003624 ORTHO05D004188 1.5e-33 147.5 91 78.0
CBR_g4138 Chara braunii HOM05D003624 ORTHO05D004188 3.4e-30 136.3 109 62.4
CARHR218910 Cardamine hirsuta HOM05D003624 ORTHO05D004188 1.9e-28 130.6 192 41.7
AUR62001070 Chenopodium quinoa HOM05D003624 ORTHO05D004188 1.2e-27 127.9 195 42.1
Cpa.g.sc80.54 Carica papaya HOM05D003624 ORTHO05D004188 8.1e-24 115.2 194 39.2
MCO11G291 Micromonas commoda HOM05D003624 ORTHO05D004188 1.1e-23 114.8 333 30.0
RcHm_v2.0_Chr2g0124981 Rosa chinensis HOM05D003624 ORTHO05D004188 8.9e-23 111.7 191 41.4
CBR_g36354 Chara braunii HOM05D003624 ORTHO05D004188 2.6e-22 110.2 136 45.6
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 7.6e-22 108.6 367 27.8
arahy.Tifrunner.gnm1.ann1.8ZK91E Arachis hypogaea HOM05D003624 ORTHO05D004188 8.4e-21 105.1 64 81.2
SEGI_09016 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 5.4e-20 102.4 137 42.3
SEGI_33076 Sequoiadendron giganteum HOM05D003919 ORTHO05D004188 7.1e-20 102.1 152 39.5
COL.COLO4_15032 Corchorus olitorius HOM05D003624 ORTHO05D004188 9.2e-20 101.7 74 66.2
SMO347G0189 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 5.1e-18 95.9 318 27.0
Ca_06299_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 1.1e-17 94.7 139 48.2
Lj8P417T12 Lonicera japonica HOM05D003624 ORTHO05D004188 2.5e-17 93.6 63 74.6
Actinidia07728 Actinidia chinensis HOM05D003624 ORTHO05D004188 5.6e-17 92.4 64 70.3
ATR0691G167 Amborella trichopoda HOM05D003624 ORTHO05D004188 8.1e-16 88.6 62 66.1
arahy.Tifrunner.gnm1.ann1.P0I32D Arachis hypogaea HOM05D003624 ORTHO05D004188 2.2e-13 80.5 64 65.6
RcHm_v2.0_Chr4g0406611 Rosa chinensis HOM05D003624 ORTHO05D004188 3.8e-13 79.7 68 64.7
SEGI_08994 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 3.2e-12 76.6 51 70.6
SEGI_35739 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 3.2e-12 76.6 51 70.6
DCAR_004680 Daucus carota HOM05D003624 ORTHO05D004188 7.1e-12 75.5 57 64.9
Prupe.4G141400 Prunus persica HOM05D003624 ORTHO05D004188 3.5e-11 73.2 51 70.6
Cfa024674 Carpinus fangiana HOM05D003624 ORTHO05D004188 8.1e-08 62.0 107 31.8
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 7.6e-06 55.5 63 57.1


User provided reference genes

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