Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p057600 Quercus lobata HOM05D003620 ORTHO05D004261 1.1e-51 206.5 108 100.0
QL02p098754 Quercus lobata HOM05D003620 ORTHO05D004261 9.6e-45 183.3 94 97.9
Haze_10767 Corylus avellana HOM05D003620 ORTHO05D004261 1.1e-24 116.7 109 66.1
Haze_10763 Corylus avellana HOM05D003620 ORTHO05D004261 1.9e-24 115.9 110 65.5
COL.COLO4_20874 Corchorus olitorius HOM05D003620 ORTHO05D004261 3.9e-22 108.2 103 60.2
Gorai.008G014600 Gossypium raimondii HOM05D003620 ORTHO05D004261 7.4e-21 104.0 92 57.6
Cfa005564 Carpinus fangiana HOM05D003620 ORTHO05D004261 1.7e-20 102.8 106 59.4
Gohir.D12G014500 Gossypium hirsutum HOM05D003620 ORTHO05D004261 1.7e-20 102.8 92 57.6
Gohir.A12G013866 Gossypium hirsutum HOM05D003620 ORTHO05D004261 4.8e-20 101.3 92 56.5
TWI14G0354 Tripterygium wilfordii HOM05D003620 ORTHO05D004261 4.8e-20 101.3 112 57.1
MD08G1222700 Malus domestica HOM05D003620 ORTHO05D004261 8.2e-20 100.5 108 59.3
Actinidia00242 Actinidia chinensis HOM05D003620 ORTHO05D004261 1.4e-19 99.8 110 53.6
Duzib132G0147 Durio zibethinus HOM05D003620 ORTHO05D004261 6.9e-19 97.4 94 58.5
Atru.chr6.881 Acer truncatum HOM05D003620 ORTHO05D004261 1.2e-18 96.7 109 54.1
ECA236G2397 Erigeron canadensis HOM05D003620 ORTHO05D004261 1.5e-18 96.3 96 58.3
Glyma.15G051100 Glycine max HOM05D003620 ORTHO05D004261 2.0e-18 95.9 90 58.9
PSO675G2802 Papaver somniferum HOM05D003620 ORTHO05D004261 7.7e-18 94.0 112 50.9
PSO541G1613 Papaver somniferum HOM05D003620 ORTHO05D004261 1.0e-17 93.6 112 50.9
Manes.10G117200 Manihot esculenta HOM05D003620 ORTHO05D004261 1.3e-17 93.2 118 52.5
SalBow5G2235 Salvia bowleyana HOM05D003620 ORTHO05D004261 1.7e-17 92.8 96 54.2
Glyma.08G181200 Glycine max HOM05D003620 ORTHO05D004261 2.2e-17 92.4 105 54.3
CsaV3_7G006180 Cucumis sativus L. HOM05D003620 ORTHO05D004261 8.5e-17 90.5 115 51.3
SGA_v2.0_scaffold83G26271 Striga asiatica HOM05D003620 ORTHO05D004261 1.1e-16 90.1 100 55.0
Oeu047370.1 Olea europaea HOM05D003620 ORTHO05D004261 1.4e-16 89.7 110 49.1
Sed0005951 Sechium edule HOM05D003620 ORTHO05D004261 1.4e-16 89.7 116 50.0
GSVIVG01029735001 Vitis vinifera HOM05D003620 ORTHO05D004261 1.4e-16 89.7 91 56.0
Actinidia38967 Actinidia chinensis HOM05D003620 ORTHO05D004261 1.9e-16 89.4 111 53.2
ClCG09G013430 Citrullus lanatus HOM05D003620 ORTHO05D004261 1.9e-16 89.4 111 51.4
CiPaw.05G039200 Carya illinoinensis HOM05D003620 ORTHO05D004261 3.2e-16 88.6 98 55.1
Nitab4.5_0007987g0020 Nicotiana tabacum HOM05D003620 ORTHO05D004261 4.2e-16 88.2 114 47.4
DCAR_001444 Daucus carota HOM05D003620 ORTHO05D004261 5.5e-16 87.8 108 48.1
Ca_00113_v3 Cicer arietinum L. HOM05D003620 ORTHO05D004261 7.2e-16 87.4 105 50.5
Cc02_g21930 Coffea canephora HOM05D003620 ORTHO05D004261 9.4e-16 87.0 117 47.9
Solyc01g104880.3 Solanum lycopersicum HOM05D003620 ORTHO05D004261 9.4e-16 87.0 108 49.1
Sopen01g047400 Solanum pennellii HOM05D003620 ORTHO05D004261 9.4e-16 87.0 108 49.1
AUR62004784 Chenopodium quinoa HOM05D003620 ORTHO05D004261 1.2e-15 86.7 105 51.4
Nitab4.5_0008610g0050 Nicotiana tabacum HOM05D003620 ORTHO05D004261 1.2e-15 86.7 114 47.4
Phvul.006G208800 Phaseolus vulgaris HOM05D003620 ORTHO05D004261 1.2e-15 86.7 105 51.4
Lsat_1_v5_gn_7_80501 Lactuca sativa HOM05D003620 ORTHO05D004261 1.6e-15 86.3 100 50.0
MELO3C018674.2 Cucumis melo HOM05D003620 ORTHO05D004261 2.1e-15 85.9 116 50.0
Potri.003G061700 Populus trichocarpa HOM05D003620 ORTHO05D004261 2.7e-15 85.5 112 46.4
VMungo0540G0770 Vigna mungo HOM05D003620 ORTHO05D004261 2.7e-15 85.5 105 51.4
Cpa.g.sc2.53 Carica papaya HOM05D003620 ORTHO05D004261 4.7e-15 84.7 102 48.0
Migut.B00642 Erythranthe guttata HOM05D003620 ORTHO05D004261 6.1e-15 84.3 110 50.9
Rhsim11G0134200 Rhododendron simsii HOM05D003620 ORTHO05D004261 6.1e-15 84.3 96 53.1
Thecc.02G144000 Theobroma cacao HOM05D003620 ORTHO05D004261 6.1e-15 84.3 95 52.6
AL8G33150 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 8.0e-15 84.0 94 50.0
AT5G57190 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 1.4e-14 83.2 108 50.0
PGR042G1212 Punica granatum HOM05D003620 ORTHO05D004261 1.4e-14 83.2 111 48.6
MSTRG.16561 Avicennia marina HOM05D003620 ORTHO05D004261 3.0e-14 82.0 112 48.2
CARHR270980 Cardamine hirsuta HOM05D003620 ORTHO05D004261 3.9e-14 81.6 108 49.1
Nn1g06259 Nelumbo nucifera HOM05D003620 ORTHO05D004261 3.9e-14 81.6 96 51.0
Oeu037206.2 Olea europaea HOM05D003620 ORTHO05D004261 3.9e-14 81.6 105 46.7
arahy.Tifrunner.gnm1.ann1.4105RR Arachis hypogaea HOM05D003620 ORTHO05D004261 5.2e-14 81.3 119 46.2
AL161U10010 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 6.7e-14 80.9 108 48.1
CSS0011415 Camellia sinensis var. sinensis HOM05D003620 ORTHO05D004261 6.7e-14 80.9 115 46.1
MBI06_g29671_MAGBIO Magnolia biondii HOM05D003620 ORTHO05D004261 6.7e-14 80.9 84 50.0
arahy.Tifrunner.gnm1.ann1.XM8XEN Arachis hypogaea HOM05D003620 ORTHO05D004261 8.8e-14 80.5 121 45.5
Eucgr.G00656 Eucalyptus grandis HOM05D003620 ORTHO05D004261 8.8e-14 80.5 71 63.4
Prupe.1G560600 Prunus persica HOM05D003620 ORTHO05D004261 8.8e-14 80.5 107 50.5
Sp6g18920 Schrenkiella parvula HOM05D003620 ORTHO05D004261 8.8e-14 80.5 112 47.3
A10p14580 Brassica napus HOM05D003620 ORTHO05D004261 1.5e-13 79.7 113 49.6
BraA10t43545Z Brassica rapa HOM05D003620 ORTHO05D004261 1.5e-13 79.7 113 49.6
HanXRQChr11g0337651 Helianthus annuus HOM05D003620 ORTHO05D004261 1.5e-13 79.7 97 47.4
TPR.G19731 Trifolium pratense HOM05D003620 ORTHO05D004261 1.5e-13 79.7 107 48.6
BcaB08g36077 Brassica carinata HOM05D003620 ORTHO05D004261 2.0e-13 79.3 113 49.6
CAN.G523.97 Capsicum annuum HOM05D003620 ORTHO05D004261 2.0e-13 79.3 93 49.5
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 2.0e-13 79.3 63 65.1
AT4G25970 Arabidopsis thaliana HOM05D003620 ORTHO05D004261 2.6e-13 79.0 112 47.3
CDE08G1148 Ceratophyllum demersum HOM05D003620 ORTHO05D004261 3.3e-13 78.6 97 43.3
BcaC04g19991 Brassica carinata HOM05D003620 ORTHO05D004261 4.4e-13 78.2 113 48.7
C09p49020 Brassica napus HOM05D003620 ORTHO05D004261 4.4e-13 78.2 113 48.7
BolC9t57753H Brassica oleracea HOM05D003620 ORTHO05D004261 4.4e-13 78.2 113 48.7
CSS0027167 Camellia sinensis var. sinensis HOM05D003620 ORTHO05D004261 4.4e-13 78.2 59 61.0
Ciclev10000710m.g Citrus clementina HOM05D003620 ORTHO05D004261 4.4e-13 78.2 104 47.1
Thhalv10024661m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 4.4e-13 78.2 105 47.6
THA.LOC104811774 Tarenaya hassleriana HOM05D003620 ORTHO05D004261 5.7e-13 77.8 74 58.1
Lj6g0005534 Lotus japonicus HOM05D003620 ORTHO05D004261 9.7e-13 77.0 103 47.6
Sc09g0004430 Simmondsia chinensis HOM05D003620 ORTHO05D004261 9.7e-13 77.0 112 48.2
Manes.07G024800 Manihot esculenta HOM05D003620 ORTHO05D004261 1.3e-12 76.6 112 48.2
Medtr2g008190 Medicago truncatula HOM05D003620 ORTHO05D004261 1.3e-12 76.6 105 47.6
THA.LOC104817775 Tarenaya hassleriana HOM05D003620 ORTHO05D004261 1.3e-12 76.6 113 47.8
Aa31LG3G330 Aethionema arabicum HOM05D003620 ORTHO05D004261 1.7e-12 76.3 112 47.3
AL7G27030 Arabidopsis lyrata HOM05D003620 ORTHO05D004261 1.7e-12 76.3 112 45.5
CARHR233480 Cardamine hirsuta HOM05D003620 ORTHO05D004261 1.7e-12 76.3 105 46.7
Sabra01G0139300 Salix brachista HOM05D003620 ORTHO05D004261 1.7e-12 76.3 114 50.9
Psat1g218440 Pisum sativum HOM05D003620 ORTHO05D004261 2.2e-12 75.9 108 47.2
Sp7g23980 Schrenkiella parvula HOM05D003620 ORTHO05D004261 2.2e-12 75.9 112 49.1
A01p17230 Brassica napus HOM05D003620 ORTHO05D004261 2.8e-12 75.5 112 48.2
HanXRQChr03g0065791 Helianthus annuus HOM05D003620 ORTHO05D004261 2.8e-12 75.5 65 58.5
BcaC09g50725 Brassica carinata HOM05D003620 ORTHO05D004261 4.8e-12 74.7 112 48.2
C01p21590 Brassica napus HOM05D003620 ORTHO05D004261 4.8e-12 74.7 112 48.2
BolC1t02078H Brassica oleracea HOM05D003620 ORTHO05D004261 4.8e-12 74.7 112 48.2
BraA01t01679Z Brassica rapa HOM05D003620 ORTHO05D004261 4.8e-12 74.7 112 48.2
CANSAT11G0919 Cannabis sativa HOM05D003620 ORTHO05D004261 4.8e-12 74.7 75 56.0
CANSAT11G1106 Cannabis sativa HOM05D003620 ORTHO05D004261 4.8e-12 74.7 75 56.0
RcHm_v2.0_Chr7g0225351 Rosa chinensis HOM05D003620 ORTHO05D004261 4.8e-12 74.7 49 69.4
Carub.0008s1770 Capsella rubella HOM05D003620 ORTHO05D004261 6.3e-12 74.3 111 45.9
Thhalv10012950m.g Eutrema salsugineum HOM05D003620 ORTHO05D004261 6.3e-12 74.3 77 55.8
Potri.001G172400 Populus trichocarpa HOM05D003620 ORTHO05D004261 8.2e-12 73.9 112 50.0
Carub.0007s1498 Capsella rubella HOM05D003620 ORTHO05D004261 1.1e-11 73.6 105 43.8
TAR625G1066 Trochodendron aralioides HOM05D003620 ORTHO05D004261 1.1e-11 73.6 110 41.8
FAN13G1243 Fragaria x ananassa HOM05D003620 ORTHO05D004261 2.4e-11 72.4 51 64.7
Lsat_1_v5_gn_9_117920 Lactuca sativa HOM05D003620 ORTHO05D004261 2.4e-11 72.4 56 62.5
HPP92_019398 Vanilla planifolia HOM05D003620 ORTHO05D004261 5.3e-11 71.2 93 47.3
Zm00001eb362570 Zea mays HOM05D003620 ORTHO05D004261 9.1e-11 70.5 90 44.4
EL10Ac4g08941 Beta vulgaris HOM05D003620 ORTHO05D004261 1.2e-10 70.1 106 46.2
BcaNung03773 Brassica carinata HOM05D003620 ORTHO05D004261 1.2e-10 70.1 105 44.8
FvH4_5g30530 Fragaria vesca HOM05D003620 ORTHO05D004261 1.6e-10 69.7 49 65.3
FAN04G1518 Fragaria x ananassa HOM05D003620 ORTHO05D004261 1.6e-10 69.7 49 65.3
FAN18G1779 Fragaria x ananassa HOM05D003620 ORTHO05D004261 1.6e-10 69.7 49 65.3
Peaxi162Scf00001g00523 Petunia axillaris HOM05D003620 ORTHO05D004261 2.6e-10 68.9 92 45.7
Dinv24229 Davidia involucrata HOM05D003620 ORTHO05D004261 3.5e-10 68.6 55 67.3
FAN08G3618 Fragaria x ananassa HOM05D003620 ORTHO05D004261 3.5e-10 68.6 49 63.3
Lj5C243G7 Lonicera japonica HOM05D003620 ORTHO05D004261 7.7e-10 67.4 52 55.8
Aqoxy6G00354 Aquilegia oxysepala HOM05D003620 ORTHO05D004261 1.7e-09 66.2 114 42.1
ATR1136G049 Amborella trichopoda HOM05D003620 ORTHO05D004261 2.1e-07 59.3 60 50.0
Pp3c15_7420 Physcomitrium patens HOM05D003620 ORTHO05D004261 2.1e-07 59.3 64 46.9
Mapoly0064s0044 Marchantia polymorpha HOM05D003620 ORTHO05D004261 3.6e-07 58.5 110 37.3
Medtr7g104390 Medicago truncatula HOM05D003620 ORTHO05D004261 1.0e-06 57.0 56 55.4
Lalb_Chr18g0060681 Lupinus albus HOM05D003620 ORTHO05D004261 1.8e-06 56.2 77 49.4
Peaxi162Scf00152g01227 Petunia axillaris HOM05D003620 ORTHO05D004261 5.2e-06 54.7 27 85.2


User provided reference genes

Program Settings