Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 0.0e+00 1190.6 602 100.0
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 6.8e-164 581.6 551 55.9
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 3.4e-163 579.3 604 52.8
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 4.4e-163 578.9 527 58.3
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 3.3e-142 509.6 545 49.4
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 5.6e-142 508.8 595 48.1
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 2.7e-136 490.0 573 46.2
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 2.5e-134 483.4 562 48.2
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 7.1e-129 465.3 586 44.0
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 1.0e-127 461.5 583 44.8
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 4.2e-121 439.5 550 45.6
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 1.2e-120 438.0 558 44.4
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 2.1e-120 437.2 548 45.1
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 2.7e-120 436.8 550 43.6
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 6.0e-120 435.6 552 44.2
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 1.3e-119 434.5 557 42.9
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 1.7e-119 434.1 547 43.9
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 8.7e-119 431.8 579 43.7
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.3e-117 427.9 607 41.8
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 8.1e-117 425.2 565 43.5
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 1.2e-115 421.4 551 44.3
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 4.5e-115 419.5 550 42.4
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 4.5e-115 419.5 593 43.5
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 1.7e-114 417.5 546 44.9
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 7.1e-113 412.1 553 43.0
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 2.7e-112 410.2 555 41.6
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 3.5e-112 409.8 553 42.9
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 4.6e-112 409.5 550 41.6
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 7.9e-112 408.7 547 43.3
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 1.3e-111 407.9 588 41.3
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 1.8e-111 407.5 588 41.3
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 5.1e-111 406.0 590 42.4
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.5e-110 404.4 606 41.3
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.9e-110 404.1 604 40.9
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 2.5e-110 403.7 604 41.1
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 4.3e-110 402.9 554 42.4
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 5.6e-110 402.5 553 42.9
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 5.6e-110 402.5 550 43.5
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 3.6e-109 399.8 553 42.0
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 6.2e-109 399.1 552 41.3
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 1.1e-108 398.3 591 39.1
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 4.0e-108 396.4 546 42.5
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 1.2e-107 394.8 512 43.8
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 5.8e-107 392.5 585 40.0
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.7e-106 391.0 551 40.5
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 1.7e-106 391.0 524 43.3
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 3.8e-106 389.8 564 42.2
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 4.9e-106 389.4 549 41.0
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 8.4e-106 388.7 566 39.2
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 1.1e-105 388.3 544 41.7
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 3.2e-105 386.7 546 41.9
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 1.2e-104 384.8 554 40.8
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.1e-104 384.0 604 40.1
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 1.3e-103 381.3 307 62.2
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 3.0e-103 380.2 559 39.7
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 1.9e-102 377.5 555 39.6
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 1.9e-102 377.5 566 39.2
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 2.5e-102 377.1 547 40.4
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 8.1e-101 372.1 551 39.2
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 3.1e-100 370.2 339 54.9
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 1.0e-98 365.2 588 37.1
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 3.8e-98 363.2 516 41.5
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 8.4e-98 362.1 543 38.3
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 2.7e-96 357.1 554 39.5
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 4.6e-96 356.3 501 39.9
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 3.0e-95 353.6 548 41.2
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.9e-94 350.9 581 38.7
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 4.3e-94 349.7 522 38.3
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 2.8e-93 347.1 603 35.7
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 6.3e-93 345.9 555 38.4
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 3.4e-91 340.1 541 36.8
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 1.7e-90 337.8 551 38.3
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 2.9e-90 337.0 546 38.1
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 3.8e-90 336.7 363 49.9
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 5.0e-90 336.3 558 37.8
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 1.9e-89 334.3 549 39.0
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 1.9e-89 334.3 549 39.0
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 2.5e-89 334.0 553 39.1
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 1.3e-87 328.2 350 49.1
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 2.3e-87 327.4 555 38.4
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 3.0e-87 327.0 545 38.3
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 8.7e-87 325.5 554 35.9
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 7.4e-86 322.4 594 35.7
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 6.3e-85 319.3 542 36.2
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 3.1e-84 317.0 404 45.3
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 3.4e-83 313.5 547 34.6
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 5.0e-82 309.7 258 61.2
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 5.1e-79 299.7 434 40.6
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 4.4e-78 296.6 540 34.4
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 1.5e-75 288.1 548 36.5
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 4.5e-75 286.6 426 42.0
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 2.9e-74 283.9 398 43.5
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 2.7e-72 277.3 608 32.2
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 4.7e-72 276.6 529 37.2
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 5.2e-71 273.1 606 31.4
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 1.3e-69 268.5 597 29.6
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 1.7e-69 268.1 309 46.3
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 1.1e-68 265.4 350 42.9
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 1.6e-67 261.5 500 38.6
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 7.0e-60 236.1 656 29.3
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 2.0e-59 234.6 247 49.8
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 1.0e-58 232.3 345 41.4
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 3.6e-56 223.8 386 36.5
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 8.8e-47 192.6 247 43.7
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 5.6e-41 173.3 120 67.5
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 8.6e-34 149.4 668 22.6
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 3.1e-31 141.0 148 54.1
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 5.8e-30 136.7 250 37.2
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 6.0e-27 126.7 266 32.7
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 7.8e-27 126.3 153 46.4
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 1.7e-26 125.2 91 59.3
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 3.9e-26 124.0 474 27.2
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 1.5e-25 122.1 106 60.4
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 5.6e-25 120.2 369 28.2
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 1.2e-24 119.0 95 56.8
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 1.6e-24 118.6 84 59.5
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 2.8e-24 117.9 129 47.3
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 1.8e-23 115.2 88 59.1
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 1.8e-23 115.2 127 46.5
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 5.8e-22 110.2 95 48.4
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 2.9e-21 107.8 124 44.4
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 3.7e-21 107.5 91 52.7
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 3.7e-21 107.5 91 52.7
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.4e-20 105.5 96 49.0
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.9e-20 105.1 94 48.9
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 4.1e-20 104.0 100 48.0
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 1.2e-19 102.4 97 46.4
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 1.3e-18 99.0 93 51.6
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.7e-18 98.6 92 53.3
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 3.3e-17 94.4 88 51.1
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 2.8e-16 91.3 69 53.6
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 1.1e-15 89.4 84 51.2
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 1.4e-15 89.0 85 42.4
SEGI_17091 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.8e-15 88.6 201 30.8
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 2.6e-14 84.7 69 55.1
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 2.6e-14 84.7 75 49.3
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 2.9e-13 81.3 103 44.7
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 8.4e-13 79.7 101 44.6
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 3.2e-12 77.8 70 47.1
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 7.1e-12 76.6 59 59.3
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 1.2e-11 75.9 43 65.1
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.2e-08 65.9 72 44.4
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.2e-08 65.9 72 44.4
QL05p011176 Quercus lobata HOM05D006766 ORTHO05D008534 1.6e-08 65.5 37 75.7
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.6e-08 65.5 80 42.5
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 1.8e-07 62.0 47 55.3
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.8e-07 62.0 44 52.3
Glyma.07G162100 Glycine max HOM05D003568 ORTHO05D004104 5.8e-06 57.0 106 37.7
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 5.8e-06 57.0 61 50.8


User provided reference genes

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