Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 0.0e+00 1191.0 576 100.0
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 0.0e+00 1097.8 576 92.5
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 0.0e+00 1088.9 569 92.1
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 0.0e+00 1080.1 573 90.2
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 1.6e-311 1072.0 573 90.1
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 2.3e-310 1068.1 566 90.3
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 3.0e-310 1067.8 573 89.7
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 3.9e-310 1067.4 573 89.7
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 5.1e-310 1067.0 573 89.2
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 4.5e-306 1053.9 570 88.8
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 1.7e-305 1052.0 570 88.1
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 1.9e-304 1048.5 576 87.2
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 2.4e-304 1048.1 570 87.9
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 9.3e-304 1046.2 561 88.2
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 9.3e-304 1046.2 562 90.0
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 6.7e-302 1040.0 577 87.5
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 1.1e-301 1039.3 569 86.1
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 9.0e-299 1029.6 561 88.1
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 3.4e-298 1027.7 555 87.0
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 3.2e-296 1021.1 565 86.0
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 9.3e-296 1019.6 561 86.3
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 9.3e-296 1019.6 577 85.1
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 2.1e-295 1018.5 553 87.7
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 5.1e-294 1013.8 569 84.0
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 1.5e-293 1012.3 533 90.2
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.5e-293 1012.3 563 87.0
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 3.3e-293 1011.1 569 83.5
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 1.8e-291 1005.4 596 81.4
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 4.0e-291 1004.2 554 86.5
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 4.0e-291 1004.2 553 86.3
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 5.3e-291 1003.8 562 84.5
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 6.9e-291 1003.4 577 83.9
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 1.2e-290 1002.7 565 83.9
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 2.6e-290 1001.5 577 84.6
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 5.8e-290 1000.3 560 84.1
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 1.7e-289 998.8 557 85.6
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 8.4e-289 996.5 590 80.2
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 2.5e-288 995.0 601 83.0
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 4.6e-287 990.7 558 83.9
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 1.0e-286 989.6 606 78.2
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 1.8e-286 988.8 558 83.7
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.8e-286 988.8 559 83.9
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 2.3e-286 988.4 556 84.2
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 3.9e-286 987.6 554 82.9
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 8.7e-286 986.5 547 85.2
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 2.5e-285 984.9 556 83.5
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 2.5e-285 984.9 578 80.3
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 5.7e-285 983.8 523 89.3
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 5.7e-285 983.8 561 84.1
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 9.7e-285 983.0 576 80.6
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 9.7e-285 983.0 576 80.6
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 2.2e-284 981.9 578 80.1
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 2.2e-284 981.9 562 83.6
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 4.1e-283 977.6 584 82.5
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 4.1e-283 977.6 561 83.8
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 6.9e-283 976.9 578 80.6
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 2.6e-282 974.9 576 80.4
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 2.9e-281 971.5 560 81.4
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 3.8e-281 971.1 553 82.5
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 1.4e-280 969.1 559 82.8
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 4.2e-280 967.6 557 83.1
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 1.6e-279 965.7 550 82.5
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 2.3e-278 961.8 576 79.7
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 3.9e-278 961.1 547 82.6
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 6.7e-278 960.3 569 78.7
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 6.7e-278 960.3 592 77.4
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.5e-277 958.4 558 81.7
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 6.3e-276 953.7 551 84.2
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 4.1e-275 951.0 549 81.4
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 3.4e-274 948.0 548 81.9
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 3.4e-274 948.0 554 80.1
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 7.7e-274 946.8 548 80.5
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 1.3e-273 946.0 557 79.9
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 6.5e-273 943.7 555 79.5
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 1.1e-272 943.0 554 78.7
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 1.9e-272 942.2 554 79.6
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 9.4e-272 939.9 558 78.7
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 7.9e-271 936.8 576 77.4
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 1.0e-270 936.4 554 79.1
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 1.0e-270 936.4 556 79.5
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 1.4e-270 936.0 554 79.6
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 2.3e-270 935.3 532 84.4
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 3.9e-270 934.5 548 81.4
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 3.9e-270 934.5 551 78.4
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.1e-269 932.9 532 85.7
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 1.5e-269 932.6 551 78.4
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 2.0e-269 932.2 555 79.1
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 3.3e-269 931.4 548 81.0
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 9.7e-269 929.9 569 78.0
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 1.7e-268 929.1 549 77.6
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 2.8e-268 928.3 554 77.8
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 8.5e-265 916.8 516 83.9
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 4.2e-264 914.4 555 78.0
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 5.5e-264 914.1 555 77.8
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 5.5e-264 914.1 555 77.8
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 9.4e-264 913.3 555 77.7
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 1.2e-263 912.9 555 78.0
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.2e-263 912.9 541 83.4
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 2.7e-263 911.8 555 77.5
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 2.7e-263 911.8 550 78.4
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 1.4e-262 909.4 534 80.3
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 1.8e-262 909.1 557 77.7
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 5.2e-262 907.5 556 77.7
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 2.6e-261 905.2 560 78.6
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 3.3e-261 904.8 556 77.5
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 3.3e-261 904.8 556 77.7
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 3.3e-261 904.8 556 77.5
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 5.7e-261 904.0 577 75.9
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 2.0e-258 895.6 557 77.0
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 2.2e-257 892.1 572 74.7
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 5.5e-256 887.5 554 78.0
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 1.2e-255 886.3 531 80.2
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 2.3e-254 882.1 517 80.3
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 5.9e-250 867.5 543 76.4
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 1.0e-246 856.7 494 82.6
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 2.3e-246 855.5 553 74.1
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 7.5e-245 850.5 538 77.7
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 7.5e-245 850.5 543 76.1
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.0e-241 840.1 515 78.6
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 1.6e-239 832.8 515 76.3
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 9.8e-237 823.5 575 69.4
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.7e-236 822.8 558 72.6
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 1.1e-224 783.5 553 68.2
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.3e-222 775.8 478 78.5
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 1.2e-199 700.3 556 63.1
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 2.1e-199 699.5 591 59.9
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 2.6e-197 692.6 576 61.3
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 3.4e-197 692.2 415 80.2
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 3.2e-195 685.6 581 59.9
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 2.8e-167 592.8 346 83.2
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 4.2e-147 525.8 333 77.5
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 7.0e-142 508.4 368 69.0
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 1.1e-139 501.1 277 83.8
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 1.6e-138 497.3 263 93.2
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 2.4e-126 456.8 572 48.4
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 2.7e-125 453.4 317 70.0
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 3.6e-114 416.4 293 70.0
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 6.2e-106 389.0 312 60.9
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 5.2e-105 386.0 215 77.7
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.3e-100 371.3 217 81.6
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 4.7e-98 362.8 288 63.5
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.5e-88 331.3 251 68.5
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 5.8e-80 302.8 579 32.8
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 3.5e-77 293.5 198 73.2
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 8.7e-76 288.9 201 70.6
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 8.1e-66 255.8 145 77.9
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 9.3e-62 242.3 424 32.8
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 1.6e-58 231.5 133 79.7
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 2.7e-53 214.2 228 47.4
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 3.6e-37 160.6 128 59.4
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 3.6e-37 160.6 141 58.9
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 1.8e-36 158.3 100 75.0
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.8e-36 158.3 122 59.0
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 1.2e-32 145.6 153 50.3
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 2.9e-31 141.0 106 61.3
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 1.6e-24 118.6 131 50.4
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.0e-23 115.9 54 90.7
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 7.0e-17 93.2 56 75.0
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 6.5e-15 86.7 66 62.1
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 2.0e-11 75.1 43 81.4
Potri.001G400600 Populus trichocarpa HOM05D004354 ORTHO05D001065 1.0e-07 62.8 63 41.3
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 2.5e-06 58.2 70 35.7
PGSC0003DMG400000359 Solanum tuberosum HOM05D000634 ORTHO05D000517 3.3e-06 57.8 63 36.5
Cpa.g.sc17.216 Carica papaya HOM05D000082 ORTHO05D000038 9.5e-06 56.2 161 28.0
Thhalv10017563m.g Eutrema salsugineum HOM05D000157 ORTHO05D004871 9.5e-06 56.2 55 40.0


User provided reference genes

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