Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 7.4e-248 860.1 453 100.0
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 1.0e-209 733.4 455 84.2
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 1.4e-198 696.4 455 81.1
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 1.2e-192 676.8 455 76.9
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 2.0e-192 676.0 460 78.3
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 7.5e-192 674.1 455 78.7
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 1.1e-190 670.2 455 77.8
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 2.7e-189 665.6 453 76.4
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 4.6e-189 664.8 457 76.4
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 5.1e-188 661.4 455 76.5
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.1e-187 660.2 455 76.5
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 1.1e-187 660.2 440 79.3
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 5.6e-187 657.9 461 75.9
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 3.6e-186 655.2 455 75.8
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.1e-185 653.7 458 76.4
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.8e-185 652.9 453 75.5
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.5e-184 649.8 455 74.5
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.0e-184 649.4 455 75.6
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 7.6e-184 647.5 455 75.8
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.3e-183 646.7 455 75.8
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 2.9e-183 645.6 453 75.1
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 8.4e-183 644.0 454 76.4
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 9.2e-182 640.6 455 74.3
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 9.2e-182 640.6 454 76.2
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 1.6e-181 639.8 457 74.0
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 1.6e-181 639.8 453 75.5
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 1.6e-181 639.8 454 74.4
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.6e-181 639.8 456 76.3
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 2.1e-181 639.4 457 74.0
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 2.1e-181 639.4 455 75.4
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 2.1e-181 639.4 454 75.6
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 3.5e-181 638.6 453 75.9
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 1.0e-180 637.1 454 75.3
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 2.3e-180 636.0 453 75.1
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 2.3e-180 636.0 454 75.1
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 6.6e-180 634.4 458 74.2
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 1.9e-179 632.9 455 75.2
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 2.5e-179 632.5 456 73.2
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 2.5e-179 632.5 455 74.9
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 3.3e-179 632.1 452 73.7
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 5.6e-179 631.3 456 75.4
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 9.6e-179 630.6 454 73.6
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 1.6e-178 629.8 454 74.4
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 1.6e-178 629.8 460 73.7
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 2.8e-178 629.0 464 72.6
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 1.4e-177 626.7 453 73.7
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 2.4e-177 625.9 446 73.8
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 3.1e-177 625.5 460 73.3
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 3.4e-176 622.1 458 72.9
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 4.4e-176 621.7 443 74.9
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 5.8e-176 621.3 460 70.7
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 1.3e-175 620.2 456 73.2
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 2.2e-175 619.4 453 73.5
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 2.9e-175 619.0 453 73.5
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 6.4e-175 617.8 446 74.7
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 8.4e-175 617.5 453 73.1
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.1e-174 617.1 432 75.7
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 2.7e-173 612.5 454 72.0
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 1.3e-172 610.1 455 71.2
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 4.5e-168 595.1 455 69.5
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 8.4e-167 590.9 453 69.1
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 2.4e-166 589.3 361 82.8
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 3.2e-166 589.0 453 68.7
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 4.2e-166 588.6 453 68.9
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 5.4e-166 588.2 453 68.7
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 7.1e-166 587.8 453 68.7
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 1.6e-165 586.6 459 68.0
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 1.8e-164 583.2 459 68.0
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 2.3e-164 582.8 453 67.3
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 3.9e-164 582.0 459 69.1
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 1.1e-163 580.5 457 68.9
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 9.6e-163 577.4 453 68.4
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 8.1e-162 574.3 433 71.1
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.1e-161 573.9 453 67.5
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 1.8e-161 573.2 454 69.6
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 3.1e-161 572.4 445 67.6
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 9.0e-161 570.9 465 67.3
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 2.2e-159 566.2 452 67.7
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 4.9e-159 565.1 453 66.4
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 4.9e-159 565.1 457 66.7
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 4.9e-159 565.1 457 66.7
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 1.9e-158 563.1 400 73.5
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.4e-158 562.8 458 66.2
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 4.6e-157 558.5 454 66.3
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 4.6e-157 558.5 454 66.3
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 4.6e-157 558.5 454 66.3
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 4.6e-157 558.5 458 66.2
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.3e-156 557.0 455 65.9
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.3e-156 557.0 455 65.9
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.8e-156 556.6 456 66.7
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 2.3e-156 556.2 458 65.9
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 1.1e-155 553.9 454 65.4
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 1.3e-154 550.4 454 64.5
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 2.1e-154 549.7 443 66.6
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 6.2e-154 548.1 454 64.3
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 3.1e-153 545.8 340 80.6
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 4.0e-153 545.4 454 64.3
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 4.0e-153 545.4 361 76.7
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 8.4e-151 537.7 453 65.3
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 7.9e-149 531.2 456 64.7
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 9.7e-147 524.2 364 72.0
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.5e-139 499.6 450 61.1
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 5.5e-134 481.9 307 79.2
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 7.2e-134 481.5 310 79.7
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 4.7e-133 478.8 306 79.7
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 2.3e-124 449.9 289 79.2
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 2.5e-118 429.9 281 77.9
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 5.5e-118 428.7 400 58.8
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 1.8e-116 423.7 371 60.6
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 9.7e-115 417.9 373 60.6
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 1.3e-114 417.5 375 59.5
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 2.2e-114 416.8 295 72.5
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 6.3e-114 415.2 366 59.8
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 2.4e-113 413.3 281 79.0
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 1.6e-112 410.6 280 72.1
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 3.6e-109 399.4 374 55.6
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 7.2e-102 375.2 368 56.0
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 5.2e-100 369.0 366 55.5
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 8.3e-98 361.7 323 61.0
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 7.8e-96 355.1 339 58.1
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 2.5e-94 350.1 384 53.4
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 4.3e-94 349.4 366 53.0
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 4.6e-88 329.3 355 50.4
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 9.5e-86 321.6 372 50.5
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 6.0e-80 302.4 375 46.1
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 8.6e-79 298.5 243 65.0
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 9.9e-67 258.5 331 47.1
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 6.2e-53 212.6 148 72.3
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 3.9e-47 193.4 344 39.8
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.9e-42 176.4 164 56.7
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 2.5e-41 174.1 220 47.7
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.1e-39 166.4 114 71.1
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 8.4e-34 149.1 88 80.7
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 1.8e-31 141.4 118 58.5
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.3e-31 141.0 113 61.9
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.9e-30 137.9 171 47.4
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 2.7e-24 117.5 73 82.2
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.3e-20 103.2 87 67.8
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 6.1e-16 89.7 124 44.4
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 3.7e-13 80.5 75 53.3
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.5e-10 69.7 79 54.4
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 2.5e-09 67.8 162 34.0


User provided reference genes

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