Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p013034 Quercus lobata HOM05D003359 ORTHO05D020488 2.7e-64 248.4 120 100.0
QL03p057181 Quercus lobata HOM05D003359 ORTHO05D004472 1.1e-57 226.5 115 93.0
QL03p057173 Quercus lobata HOM05D003359 ORTHO05D004472 1.1e-44 183.3 114 73.7
Cfa009233 Carpinus fangiana HOM05D003359 ORTHO05D004472 6.5e-42 174.1 116 71.6
CiPaw.05G179800 Carya illinoinensis HOM05D003359 ORTHO05D004472 5.5e-41 171.0 114 69.3
Ciclev10030938m.g Citrus clementina HOM05D003359 ORTHO05D004472 3.0e-39 165.2 114 64.9
Potri.008G185300 Populus trichocarpa HOM05D003359 ORTHO05D004472 5.1e-39 164.5 115 67.8
CANSAT01G0511 Cannabis sativa HOM05D003359 ORTHO05D004472 3.3e-38 161.8 114 67.5
Atru.chr11.2161 Acer truncatum HOM05D003359 ORTHO05D004472 7.4e-38 160.6 114 64.0
CSS0009419 Camellia sinensis var. sinensis HOM05D003359 ORTHO05D004472 7.4e-38 160.6 115 64.3
Sabra08G0140300 Salix brachista HOM05D003359 ORTHO05D006537 9.7e-38 160.2 114 67.5
vmacro16179 Vaccinium macrocarpon HOM05D003359 ORTHO05D004472 9.7e-38 160.2 114 66.7
GSVIVG01000554001 Vitis vinifera HOM05D003359 ORTHO05D005275 2.8e-37 158.7 114 63.2
Lalb_Chr07g0185431 Lupinus albus HOM05D003359 ORTHO05D004472 1.4e-36 156.4 114 64.9
RcHm_v2.0_Chr4g0433401 Rosa chinensis HOM05D003359 ORTHO05D004472 1.4e-36 156.4 114 63.2
MBI19_g09304_MAGBIO Magnolia biondii HOM05D003359 ORTHO05D004472 1.8e-36 156.0 114 61.4
Duzib251G0748 Durio zibethinus HOM05D003359 ORTHO05D004472 5.3e-36 154.5 114 64.0
Actinidia37443 Actinidia chinensis HOM05D003359 ORTHO05D004472 1.2e-35 153.3 114 63.2
Potri.010G048300 Populus trichocarpa HOM05D003359 ORTHO05D004472 1.2e-35 153.3 115 66.1
Sabra10G0020500 Salix brachista HOM05D003359 ORTHO05D006537 2.0e-35 152.5 114 64.0
TAR622G1186 Trochodendron aralioides HOM05D003359 ORTHO05D004472 2.0e-35 152.5 114 61.4
Thecc.02G263100 Theobroma cacao HOM05D003359 ORTHO05D004472 2.6e-35 152.1 115 62.6
FvH4_4g25930 Fragaria vesca HOM05D003359 ORTHO05D004472 3.5e-35 151.8 114 60.5
FAN07G2501 Fragaria x ananassa HOM05D003359 ORTHO05D004472 3.5e-35 151.8 114 59.6
Carub.0005s0430 Capsella rubella HOM05D003359 ORTHO05D004472 7.7e-35 150.6 118 62.7
FAN12G2341 Fragaria x ananassa HOM05D003359 ORTHO05D004472 1.0e-34 150.2 114 59.6
SalBow2G2300 Salvia bowleyana HOM05D003359 ORTHO05D020488 1.3e-34 149.8 114 57.9
arahy.Tifrunner.gnm1.ann1.6M8RVH Arachis hypogaea HOM05D003359 ORTHO05D004472 1.7e-34 149.4 114 61.4
Thhalv10003806m.g Eutrema salsugineum HOM05D003359 ORTHO05D004472 1.7e-34 149.4 118 61.0
Oeu057546.1 Olea europaea HOM05D003359 ORTHO05D004472 1.7e-34 149.4 114 59.6
Lj4g0008357 Lotus japonicus HOM05D003359 ORTHO05D004472 2.2e-34 149.1 114 57.9
FAN12G3248 Fragaria x ananassa HOM05D003359 ORTHO05D004472 3.8e-34 148.3 114 59.6
Sp2g15530 Schrenkiella parvula HOM05D003359 ORTHO05D004472 6.5e-34 147.5 118 61.9
Glyma.11G243600 Glycine max HOM05D003359 ORTHO05D004472 1.1e-33 146.7 120 59.2
AUR62005500 Chenopodium quinoa HOM05D003359 ORTHO05D004472 1.4e-33 146.4 112 62.5
Lj6g0024639 Lotus japonicus HOM05D003359 ORTHO05D004472 1.9e-33 146.0 114 58.8
Medtr2g096530 Medicago truncatula HOM05D003359 ORTHO05D004472 1.9e-33 146.0 114 62.3
arahy.Tifrunner.gnm1.ann1.9A08C8 Arachis hypogaea HOM05D003359 ORTHO05D004472 2.5e-33 145.6 114 59.6
Aqoxy3G01254 Aquilegia oxysepala HOM05D003359 ORTHO05D004472 4.2e-33 144.8 114 61.4
AUR62024240 Chenopodium quinoa HOM05D003359 ORTHO05D004472 4.2e-33 144.8 112 60.7
Ca_25137_v3 Cicer arietinum L. HOM05D003359 ORTHO05D004472 5.5e-33 144.4 116 57.8
Prupe.1G247000 Prunus persica HOM05D003359 ORTHO05D004472 5.5e-33 144.4 114 57.9
Aqoxy5G03712 Aquilegia oxysepala HOM05D003359 ORTHO05D004472 1.6e-32 142.9 114 55.3
Medtr3g086580 Medicago truncatula HOM05D003359 ORTHO05D004472 2.1e-32 142.5 114 58.8
AL5G15150 Arabidopsis lyrata HOM05D003359 ORTHO05D004472 2.7e-32 142.1 119 61.3
Hund06039 Selenicereus undatus HOM05D003359 ORTHO05D004472 2.7e-32 142.1 117 56.4
TPR.G30530 Trifolium pratense HOM05D003359 ORTHO05D004472 2.7e-32 142.1 114 57.0
TWI36G1577 Tripterygium wilfordii HOM05D003359 ORTHO05D004472 2.7e-32 142.1 114 59.6
Medtr8g089745 Medicago truncatula HOM05D003359 ORTHO05D004472 3.6e-32 141.7 114 59.6
Nn3g16675 Nelumbo nucifera HOM05D003359 ORTHO05D004472 4.7e-32 141.4 114 56.1
Glyma.05G174200 Glycine max HOM05D003359 ORTHO05D004472 6.1e-32 141.0 114 58.8
Glyma.08G131400 Glycine max HOM05D003359 ORTHO05D004472 6.1e-32 141.0 114 59.6
Phvul.001G255500 Phaseolus vulgaris HOM05D003359 ORTHO05D004472 6.1e-32 141.0 114 57.0
Sed0021427 Sechium edule HOM05D003359 ORTHO05D004472 6.1e-32 141.0 113 55.8
ATR0824G097 Amborella trichopoda HOM05D003359 ORTHO05D004472 8.0e-32 140.6 115 56.5
CsaV3_2G025010 Cucumis sativus L. HOM05D003359 ORTHO05D004472 8.0e-32 140.6 113 56.6
Lalb_Chr23g0277621 Lupinus albus HOM05D003359 ORTHO05D004472 8.0e-32 140.6 114 60.5
CARHR147390 Cardamine hirsuta HOM05D003359 ORTHO05D004472 1.4e-31 139.8 118 58.5
Medtr8g089740 Medicago truncatula HOM05D003359 ORTHO05D004472 1.4e-31 139.8 115 56.5
AT3G26380 Arabidopsis thaliana HOM05D003359 ORTHO05D004472 2.3e-31 139.0 119 61.3
ClCG08G017630 Citrullus lanatus HOM05D003359 ORTHO05D004472 2.3e-31 139.0 113 55.8
Gohir.A03G133100 Gossypium hirsutum HOM05D003359 ORTHO05D004472 2.3e-31 139.0 114 57.9
Gorai.005G176600 Gossypium raimondii HOM05D003359 ORTHO05D004472 2.3e-31 139.0 114 57.9
BcaB07g30230 Brassica carinata HOM05D003359 ORTHO05D004472 3.0e-31 138.7 119 58.0
Cc11_g15940 Coffea canephora HOM05D003359 ORTHO05D020488 3.0e-31 138.7 114 56.1
Cpa.g.sc33.46 Carica papaya HOM05D003359 ORTHO05D004472 3.9e-31 138.3 113 61.1
Gohir.D02G157400 Gossypium hirsutum HOM05D003359 ORTHO05D004472 3.9e-31 138.3 114 57.0
HanXRQChr08g0208381 Helianthus annuus HOM05D003359 ORTHO05D004472 3.9e-31 138.3 114 57.0
TPR.G6223 Trifolium pratense HOM05D003359 ORTHO05D004472 3.9e-31 138.3 116 62.9
VMungo1383G0093 Vigna mungo HOM05D003359 ORTHO05D004472 3.9e-31 138.3 115 55.7
EL10Ac6g13871 Beta vulgaris HOM05D003359 ORTHO05D004472 5.2e-31 137.9 112 56.2
Haze_12269 Corylus avellana HOM05D003359 ORTHO05D006537 6.7e-31 137.5 90 68.9
Nitab4.5_0002787g0030 Nicotiana tabacum HOM05D003359 ORTHO05D004472 8.8e-31 137.1 115 57.4
Ca_17782_v3 Cicer arietinum L. HOM05D003359 ORTHO05D004472 1.1e-30 136.7 116 57.8
DCAR_029363 Daucus carota HOM05D003359 ORTHO05D004472 1.1e-30 136.7 114 53.5
Nitab4.5_0000229g0100 Nicotiana tabacum HOM05D003359 ORTHO05D004472 1.5e-30 136.3 115 56.5
PSO478G4543 Papaver somniferum HOM05D003359 ORTHO05D004472 1.5e-30 136.3 114 55.3
BcaC03g17337 Brassica carinata HOM05D003359 ORTHO05D004472 2.0e-30 136.0 119 57.1
A02p34540 Brassica napus HOM05D003359 ORTHO05D004472 2.0e-30 136.0 119 58.0
Aa31LG2G6140 Aethionema arabicum HOM05D003359 ORTHO05D006537 2.6e-30 135.6 114 56.1
MELO3C010698.2 Cucumis melo HOM05D003359 ORTHO05D004472 5.7e-30 134.4 113 55.8
QL08p013018 Quercus lobata HOM05D003359 ORTHO05D020488 5.7e-30 134.4 69 92.8
PSO017G1803 Papaver somniferum HOM05D003359 ORTHO05D004472 7.4e-30 134.0 114 54.4
Eucgr.H02477 Eucalyptus grandis HOM05D003359 ORTHO05D004472 1.3e-29 133.3 115 54.8
SGA_v2.0_scaffold100G29574 Striga asiatica HOM05D003359 ORTHO05D004472 2.2e-29 132.5 114 52.6
Phvul.002G259200 Phaseolus vulgaris HOM05D003359 ORTHO05D004472 3.7e-29 131.7 114 55.3
PGR119G1467 Punica granatum HOM05D003359 ORTHO05D004472 1.1e-28 130.2 115 54.8
MSTRG.7949 Avicennia marina HOM05D003359 ORTHO05D004472 9.1e-28 127.1 114 51.8
Psat5g091760 Pisum sativum HOM05D003359 ORTHO05D004472 9.1e-28 127.1 114 52.6
Lsat_1_v5_gn_8_152721 Lactuca sativa HOM05D003359 ORTHO05D004472 2.0e-27 125.9 105 54.3
TPR.G6289 Trifolium pratense HOM05D003359 ORTHO05D004472 2.6e-27 125.6 118 54.2
SGA_v2.0_scaffold71G23972 Striga asiatica HOM05D003359 ORTHO05D004472 3.5e-27 125.2 114 50.9
THA.LOC104805279 Tarenaya hassleriana HOM05D003359 ORTHO05D004472 4.5e-27 124.8 117 51.3
C02p52860 Brassica napus HOM05D003359 ORTHO05D004472 1.0e-26 123.6 107 56.1
Eucgr.H02480 Eucalyptus grandis HOM05D003359 ORTHO05D004472 2.2e-26 122.5 116 51.7
Glyma.14G049900 Glycine max HOM05D003359 ORTHO05D004472 8.5e-26 120.6 114 54.4
PGSC0003DMG400011728 Solanum tuberosum HOM05D003359 ORTHO05D004472 1.5e-25 119.8 114 52.6
TWI18G0898 Tripterygium wilfordii HOM05D003359 ORTHO05D004472 1.5e-25 119.8 117 50.4
Psat7g058680 Pisum sativum HOM05D003359 ORTHO05D004472 1.9e-25 119.4 117 50.4
Sopen05g008640 Solanum pennellii HOM05D003359 ORTHO05D004472 1.9e-25 119.4 114 51.8
Aqoxy5G03710 Aquilegia oxysepala HOM05D003359 ORTHO05D004472 2.5e-25 119.0 119 46.2
Eucgr.H02479 Eucalyptus grandis HOM05D003359 ORTHO05D004472 2.5e-25 119.0 116 49.1
Solyc05g013720.3 Solanum lycopersicum HOM05D003359 ORTHO05D004472 3.2e-25 118.6 114 50.9
Phvul.008G214500 Phaseolus vulgaris HOM05D003359 ORTHO05D004472 5.5e-25 117.9 115 55.7
QL03p057097 Quercus lobata HOM05D003359 ORTHO05D004472 2.1e-24 115.9 83 62.7
BraA02t08464Z Brassica rapa HOM05D003359 ORTHO05D004472 3.6e-24 115.2 91 61.5
ECA233G4229 Erigeron canadensis HOM05D003359 ORTHO05D004472 1.0e-23 113.6 89 59.6
BolC2t11365H Brassica oleracea HOM05D003359 ORTHO05D004472 1.8e-23 112.8 91 60.4
Lj3A1060T75 Lonicera japonica HOM05D003359 ORTHO05D004472 3.0e-23 112.1 115 50.4
MD16G1099400 Malus domestica HOM05D003359 ORTHO05D004472 3.0e-23 112.1 115 50.4
MD13G1098300 Malus domestica HOM05D003359 ORTHO05D004472 6.7e-23 110.9 119 49.6
QL03p057114 Quercus lobata HOM05D003359 ORTHO05D020488 6.7e-23 110.9 83 59.0
arahy.Tifrunner.gnm1.ann1.JIIR6A Arachis hypogaea HOM05D003359 ORTHO05D004472 1.2e-22 110.2 106 50.0
Eucgr.H02478 Eucalyptus grandis HOM05D003359 ORTHO05D004472 1.2e-22 110.2 115 45.2
Duzib268G0493 Durio zibethinus HOM05D003359 ORTHO05D004472 1.5e-22 109.8 127 48.8
QL03p057135 Quercus lobata HOM05D003359 ORTHO05D004472 2.6e-22 109.0 83 59.0
QL03p057161 Quercus lobata HOM05D003359 ORTHO05D020488 2.6e-22 109.0 83 59.0
MD13G1098400 Malus domestica HOM05D003359 ORTHO05D004472 9.7e-22 107.1 115 47.8
Os01g0518500 Oryza sativa ssp. japonica HOM05D003359 ORTHO05D004472 9.7e-22 107.1 116 47.4
Ciclev10003125m.g Citrus clementina HOM05D003359 ORTHO05D004472 2.2e-21 105.9 90 54.4
Sc14g0008780 Simmondsia chinensis HOM05D003359 ORTHO05D004472 2.2e-21 105.9 74 67.6
Zm00001eb409230 Zea mays HOM05D003359 ORTHO05D004472 1.1e-20 103.6 114 46.5
SEGI_30194 Sequoiadendron giganteum HOM05D003359 ORTHO05D004472 1.2e-19 100.1 124 42.7
Nn4g22564 Nelumbo nucifera HOM05D003359 ORTHO05D004472 2.0e-19 99.4 69 63.8
Ciclev10033489m.g Citrus clementina HOM05D003359 ORTHO05D004472 2.7e-19 99.0 84 53.6
HPP92_023360 Vanilla planifolia HOM05D003359 ORTHO05D004472 5.9e-19 97.8 82 52.4
HPP92_023373 Vanilla planifolia HOM05D003359 ORTHO05D004472 5.9e-19 97.8 82 52.4
Lj6C814T12 Lonicera japonica HOM05D003359 ORTHO05D004472 1.7e-18 96.3 81 55.6
HPP92_023372 Vanilla planifolia HOM05D003359 ORTHO05D004472 1.7e-18 96.3 81 58.0
Medtr8g089725 Medicago truncatula HOM05D003359 ORTHO05D004472 2.9e-18 95.5 97 49.5
CAN.G272.4 Capsicum annuum HOM05D003359 ORTHO05D004472 6.5e-18 94.4 82 52.4
Medtr8g089735 Medicago truncatula HOM05D003359 ORTHO05D004472 1.1e-17 93.6 97 48.5
Glyma.02G267700 Glycine max HOM05D003359 ORTHO05D004472 3.2e-17 92.0 116 45.7
FAN05G3491 Fragaria x ananassa HOM05D003359 ORTHO05D004472 5.5e-17 91.3 117 43.6
FvH4_6g05560 Fragaria vesca HOM05D003359 ORTHO05D004472 7.2e-17 90.9 88 48.9
FAN14G4241 Fragaria x ananassa HOM05D003359 ORTHO05D004472 7.2e-17 90.9 88 48.9
RcHm_v2.0_Chr3g0454341 Rosa chinensis HOM05D003359 ORTHO05D004472 9.4e-17 90.5 116 44.8
arahy.Tifrunner.gnm1.ann1.0JE8SP Arachis hypogaea HOM05D006807 ORTHO05D008528 2.1e-16 89.4 68 58.8
Lalb_Chr04g0250101 Lupinus albus HOM05D003359 ORTHO05D004472 6.1e-16 87.8 98 46.9
Peaxi162Scf00128g00456 Petunia axillaris HOM05D003359 ORTHO05D004472 1.0e-15 87.0 115 43.5
PSO067G0007 Papaver somniferum HOM05D003359 ORTHO05D004472 2.3e-15 85.9 90 46.7
LjContig00029g0017310 Lotus japonicus HOM05D003359 ORTHO05D004472 4.0e-15 85.1 85 51.8
Medtr8g089780 Medicago truncatula HOM05D003359 ORTHO05D020488 2.0e-14 82.8 65 60.0
arahy.Tifrunner.gnm1.ann1.5678GR Arachis hypogaea HOM05D003359 ORTHO05D004472 3.7e-13 78.6 79 46.8
Haze_07805 Corylus avellana HOM05D003359 ORTHO05D004472 1.8e-12 76.3 45 73.3
VMungo0647G2422 Vigna mungo HOM05D003359 ORTHO05D000417 3.1e-12 75.5 93 45.2
Glyma.02G267600 Glycine max HOM05D003359 ORTHO05D019577 1.6e-11 73.2 72 52.8
SMO356G0596 Selaginella moellendorffii HOM05D003359 ORTHO05D004472 2.7e-11 72.4 141 32.6
FAN05G1630 Fragaria x ananassa HOM05D003359 ORTHO05D004472 1.7e-10 69.7 73 46.6
FAN14G5485 Fragaria x ananassa HOM05D003359 ORTHO05D004472 2.9e-10 68.9 72 47.2
TWI36G0326 Tripterygium wilfordii HOM05D003359 ORTHO05D004472 3.8e-10 68.6 85 43.5
CiPaw.11G025500 Carya illinoinensis HOM05D003359 ORTHO05D004472 6.6e-10 67.8 43 67.4
Actinidia15105 Actinidia chinensis HOM05D000434 ORTHO05D008848 1.9e-09 66.2 67 52.2
SEGI_05831 Sequoiadendron giganteum HOM05D003359 ORTHO05D004472 1.6e-08 63.2 94 35.1
QL03p056989 Quercus lobata HOM05D003359 ORTHO05D004472 1.8e-07 59.7 37 67.6
Pp3c11_18080 Physcomitrium patens HOM05D003359 ORTHO05D004472 1.2e-06 57.0 155 28.4
ATR0824G255 Amborella trichopoda HOM05D003359 ORTHO05D004472 4.4e-06 55.1 85 29.4


User provided reference genes

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