Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 3.3e-256 887.9 448 100.0
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 1.1e-54 218.4 602 32.1
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 2.9e-42 177.2 570 30.0
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 5.4e-41 172.9 612 28.4
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 1.1e-33 148.7 161 52.8
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 1.3e-31 141.7 147 52.4
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.5e-30 138.3 147 53.1
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 1.5e-30 138.3 147 53.1
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 7.3e-30 136.0 120 60.8
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 9.6e-30 135.6 420 29.8
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 2.1e-29 134.4 420 29.0
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 2.1e-29 134.4 127 57.5
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 4.7e-29 133.3 127 57.5
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 8.1e-29 132.5 119 62.2
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 1.7e-26 124.8 123 57.7
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 2.9e-26 124.0 127 56.7
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 4.9e-26 123.2 127 55.9
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 8.4e-26 122.5 112 57.1
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 1.9e-25 121.3 122 55.7
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.4e-25 120.9 127 51.2
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 2.4e-25 120.9 120 57.5
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 4.2e-25 120.2 116 57.8
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 2.1e-24 117.9 130 56.2
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 2.7e-24 117.5 136 52.2
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 7.8e-24 115.9 127 49.6
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 1.0e-23 115.5 128 53.1
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 2.3e-23 114.4 128 50.0
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 3.0e-23 114.0 130 55.4
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 3.9e-23 113.6 144 51.4
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 6.6e-23 112.8 122 54.1
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 8.7e-23 112.5 207 41.1
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 1.5e-22 111.7 121 53.7
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 3.3e-22 110.5 112 52.7
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 1.6e-21 108.2 131 49.6
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 2.8e-21 107.5 116 50.9
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 6.2e-21 106.3 116 51.7
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 6.2e-21 106.3 121 52.9
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 1.1e-20 105.5 126 50.0
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 1.4e-20 105.1 248 33.9
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 1.8e-20 104.8 121 52.9
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 2.4e-20 104.4 122 50.8
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 2.4e-20 104.4 111 51.4
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 4.0e-20 103.6 113 44.2
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 5.3e-20 103.2 122 50.0
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 5.3e-20 103.2 127 48.0
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 5.3e-20 103.2 98 54.1
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 6.9e-20 102.8 119 47.9
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 9.0e-20 102.4 133 52.6
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 9.0e-20 102.4 188 38.8
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 9.0e-20 102.4 138 47.8
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 1.2e-19 102.1 127 48.0
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 1.2e-19 102.1 127 48.0
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 1.2e-19 102.1 121 47.9
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 1.5e-19 101.7 114 50.9
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 5.8e-19 99.8 173 39.3
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 1.3e-18 98.6 127 46.5
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 1.3e-18 98.6 127 46.5
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 2.2e-18 97.8 80 66.2
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 2.9e-18 97.4 111 48.6
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 2.9e-18 97.4 112 51.8
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 3.8e-18 97.1 101 54.5
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 4.9e-18 96.7 106 52.8
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 6.4e-18 96.3 154 42.2
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 1.9e-17 94.7 121 47.1
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 1.9e-17 94.7 122 49.2
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 2.4e-17 94.4 127 47.2
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 4.2e-17 93.6 113 49.6
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 5.4e-17 93.2 112 48.2
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 9.3e-17 92.4 67 71.6
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 1.2e-16 92.0 121 47.9
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 1.2e-16 92.0 154 39.6
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 1.2e-16 92.0 154 39.6
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 1.2e-16 92.0 110 43.6
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 1.6e-16 91.7 119 46.2
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 2.1e-16 91.3 122 44.3
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 2.1e-16 91.3 110 42.7
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 3.5e-16 90.5 112 44.6
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 4.6e-16 90.1 112 46.4
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 4.6e-16 90.1 121 49.6
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 4.6e-16 90.1 121 47.1
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 7.9e-16 89.4 121 47.9
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 2.3e-15 87.8 126 44.4
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 2.3e-15 87.8 122 46.7
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 3.0e-15 87.4 114 46.5
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.1e-14 85.5 122 42.6
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 1.9e-14 84.7 105 46.7
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 1.9e-14 84.7 96 45.8
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 2.5e-14 84.3 161 36.6
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 3.3e-14 84.0 131 38.9
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 4.3e-14 83.6 121 40.5
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 9.6e-14 82.4 97 44.3
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 2.1e-13 81.3 94 47.9
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 2.1e-13 81.3 96 43.8
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 2.1e-13 81.3 96 43.8
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 4.8e-13 80.1 114 43.9
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 6.2e-13 79.7 93 45.2
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 1.1e-12 79.0 94 42.6
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 1.4e-12 78.6 127 37.8
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 1.8e-12 78.2 89 42.7
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 2.4e-12 77.8 94 41.5
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 9.0e-12 75.9 143 35.0
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 7.6e-11 72.8 93 40.9
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 1.3e-10 72.0 105 41.9
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 1.3e-10 72.0 190 33.2
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 2.9e-10 70.9 109 33.9
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.9e-10 70.9 93 41.9
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 4.2e-09 67.0 91 45.1
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 5.4e-09 66.6 68 50.0
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 6.0e-08 63.2 152 32.9
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 3.9e-07 60.5 106 37.7
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 3.9e-07 60.5 150 30.7
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 8.7e-07 59.3 94 37.2


User provided reference genes

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