Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 1.8e-96 355.9 184 100.0
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 8.9e-83 310.5 191 84.8
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 2.0e-82 309.3 188 86.2
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 1.9e-80 302.8 187 82.9
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 2.7e-79 298.9 187 82.4
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 1.1e-77 293.5 187 79.7
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 3.6e-76 288.5 185 79.5
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.1e-75 287.0 187 78.1
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 1.1e-75 287.0 186 78.5
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 1.4e-75 286.6 186 80.1
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 6.8e-75 284.3 185 77.3
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 8.9e-75 283.9 187 79.1
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 8.9e-75 283.9 188 78.7
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.2e-74 283.5 187 78.1
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.2e-74 283.5 187 78.1
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 1.2e-74 283.5 186 78.5
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 1.2e-74 283.5 186 77.4
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.5e-74 283.1 187 77.0
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 1.5e-74 283.1 187 78.1
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 3.4e-74 282.0 184 77.2
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 3.4e-74 282.0 186 78.5
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 4.4e-74 281.6 188 78.2
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 9.9e-74 280.4 187 76.5
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 1.3e-73 280.0 175 79.4
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 2.9e-73 278.9 187 77.0
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 3.7e-73 278.5 193 76.2
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 3.7e-73 278.5 185 78.4
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 4.9e-73 278.1 187 77.0
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 6.4e-73 277.7 188 78.2
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 6.4e-73 277.7 185 78.4
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 1.1e-72 276.9 185 77.8
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 1.9e-72 276.2 189 74.6
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 1.9e-72 276.2 186 76.9
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 2.4e-72 275.8 191 76.4
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 2.4e-72 275.8 191 76.4
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 3.2e-72 275.4 189 74.6
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 3.2e-72 275.4 191 77.0
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 5.4e-72 274.6 185 77.8
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 7.1e-72 274.2 189 75.1
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 7.1e-72 274.2 189 77.2
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 7.1e-72 274.2 184 77.7
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 9.2e-72 273.9 186 75.8
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 1.2e-71 273.5 184 75.5
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.2e-71 273.5 184 77.7
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 1.2e-71 273.5 189 75.1
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 1.6e-71 273.1 184 78.8
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 3.5e-71 271.9 188 73.9
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 6.0e-71 271.2 187 74.9
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 1.0e-70 270.4 185 76.2
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 1.3e-70 270.0 191 75.4
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 1.3e-70 270.0 185 74.6
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 1.3e-70 270.0 185 77.8
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 1.7e-70 269.6 187 77.0
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 1.7e-70 269.6 191 73.3
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 3.9e-70 268.5 187 77.0
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 3.9e-70 268.5 187 75.4
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 6.6e-70 267.7 186 74.2
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 8.6e-70 267.3 183 77.6
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 1.1e-69 266.9 188 77.1
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 1.1e-69 266.9 187 75.9
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 1.1e-69 266.9 186 75.8
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 5.6e-69 264.6 185 75.7
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 1.6e-68 263.1 187 74.9
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 6.2e-68 261.2 192 74.0
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.4e-67 260.0 188 71.3
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 1.8e-67 259.6 215 65.6
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 1.8e-67 259.6 184 75.0
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 1.8e-67 259.6 187 75.4
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 3.1e-67 258.8 172 78.5
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 8.9e-67 257.3 187 71.1
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.2e-66 256.9 187 71.1
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 1.2e-66 256.9 187 71.1
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 2.6e-66 255.8 203 68.5
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 1.7e-65 253.1 187 72.2
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 3.8e-65 251.9 187 71.1
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 3.8e-65 251.9 182 71.4
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 3.8e-65 251.9 188 72.3
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 1.1e-64 250.4 177 73.4
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 1.4e-64 250.0 189 72.0
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 1.4e-64 250.0 189 72.0
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 2.4e-64 249.2 188 70.7
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 2.4e-64 249.2 187 72.7
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 3.2e-64 248.8 191 69.6
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 4.2e-64 248.4 187 70.1
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 4.2e-64 248.4 185 69.2
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 5.4e-64 248.1 187 71.1
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 7.1e-64 247.7 188 70.2
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 7.1e-64 247.7 188 70.2
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 7.1e-64 247.7 188 70.2
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 7.1e-64 247.7 187 70.6
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 9.3e-64 247.3 225 61.3
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 1.2e-63 246.9 187 71.1
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 7.8e-63 244.2 169 75.7
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 3.0e-62 242.3 178 71.9
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 1.5e-61 240.0 189 66.7
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 1.9e-61 239.6 189 66.1
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 2.5e-61 239.2 189 69.3
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 2.5e-61 239.2 188 69.7
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 3.3e-61 238.8 125 98.4
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 4.3e-61 238.4 179 73.2
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 7.3e-61 237.7 185 69.2
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 2.8e-60 235.7 158 77.2
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 8.1e-60 234.2 181 70.2
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 1.4e-59 233.4 185 69.2
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 1.4e-59 233.4 185 70.8
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 5.3e-59 231.5 125 95.2
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 2.6e-58 229.2 182 68.7
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 5.8e-58 228.0 164 72.6
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 9.9e-58 227.3 182 68.1
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 1.3e-57 226.9 201 62.7
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.7e-57 226.5 188 69.1
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 1.7e-57 226.5 186 67.7
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.2e-57 226.1 157 73.9
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 2.2e-57 226.1 202 61.9
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 6.4e-57 224.6 217 57.1
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 2.4e-56 222.6 194 61.9
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 2.4e-56 222.6 140 80.0
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 3.2e-56 222.2 140 79.3
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 3.2e-56 222.2 140 79.3
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 4.6e-55 218.4 143 78.3
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 4.6e-55 218.4 190 68.9
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 1.0e-54 217.2 194 63.9
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 2.3e-54 216.1 124 87.1
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 6.6e-54 214.5 187 62.6
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 2.5e-53 212.6 184 64.1
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 7.3e-53 211.1 155 71.6
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.6e-52 209.9 175 64.6
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 2.8e-52 209.1 194 62.4
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 2.8e-52 209.1 124 84.7
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 3.6e-52 208.8 181 64.6
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 4.8e-52 208.4 124 83.1
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 6.2e-52 208.0 154 68.2
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 2.4e-51 206.1 154 67.5
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 3.1e-51 205.7 175 62.3
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 6.9e-51 204.5 139 74.1
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 6.9e-51 204.5 172 64.5
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 5.8e-50 201.4 145 75.9
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 7.6e-50 201.1 132 76.5
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 2.9e-49 199.1 126 80.2
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 4.9e-49 198.4 126 80.2
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 1.9e-48 196.4 126 78.6
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 3.5e-47 192.2 146 69.2
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 4.6e-47 191.8 197 57.9
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 4.0e-43 178.7 189 56.6
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 3.4e-42 175.6 192 53.1
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 4.9e-41 171.8 195 51.8
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 5.5e-40 168.3 192 53.6
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 1.2e-39 167.2 138 63.8
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.6e-39 166.8 193 50.3
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 3.5e-39 165.6 125 66.4
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 3.7e-36 155.6 122 62.3
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 1.8e-35 153.3 125 62.4
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 4.1e-35 152.1 110 71.8
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.7e-33 146.7 177 46.3
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 3.8e-33 145.6 151 57.0
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.1e-32 144.1 159 52.2
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 5.5e-32 141.7 170 51.2
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 2.3e-30 136.3 94 73.4
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 3.3e-29 132.5 123 63.4
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 7.4e-29 131.3 79 81.0
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 3.7e-28 129.0 102 59.8
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 5.9e-26 121.7 68 89.7
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 2.9e-25 119.4 68 89.7
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.1e-24 117.5 68 88.2
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 8.2e-20 101.3 123 52.8
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 1.4e-19 100.5 123 52.8
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 7.7e-18 94.7 69 69.6
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 5.0e-17 92.0 56 78.6
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 8.5e-17 91.3 53 81.1
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 1.1e-16 90.9 53 81.1
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 2.5e-16 89.7 53 79.2
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 3.2e-16 89.4 47 91.5
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 2.3e-14 83.2 124 39.5
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 4.1e-11 72.4 97 47.4
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 2.6e-10 69.7 79 46.8
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 2.2e-09 66.6 50 66.0
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 2.9e-09 66.2 62 54.8
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 5.0e-09 65.5 62 54.8
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 3.2e-08 62.8 62 53.2
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 4.7e-07 58.9 30 93.3


User provided reference genes

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