Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 0.0e+00 1149.0 609 100.0
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 1.2e-285 986.1 612 82.7
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 1.7e-268 929.1 637 77.2
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 4.3e-267 924.5 612 78.1
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 6.0e-253 877.5 611 73.3
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 9.6e-251 870.2 611 72.3
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 1.2e-248 863.2 612 72.2
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 3.8e-247 858.2 613 72.8
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 4.3e-243 844.7 617 70.3
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 3.4e-240 835.1 618 70.9
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 2.5e-238 828.9 610 69.5
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 7.9e-237 823.9 618 68.4
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 8.8e-236 820.5 607 70.8
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 2.0e-235 819.3 619 68.3
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 7.4e-235 817.4 611 72.7
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 6.9e-233 810.8 618 68.1
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 2.5e-230 802.4 611 68.6
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 6.1e-229 797.7 615 67.5
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 2.0e-227 792.7 618 66.8
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.3e-227 792.0 608 67.6
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 5.0e-223 778.1 620 65.8
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 1.0e-220 770.4 615 65.7
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 1.8e-220 769.6 611 66.1
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 8.8e-220 767.3 610 65.4
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 8.2e-218 760.8 731 56.9
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 2.9e-215 752.3 615 64.1
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 5.0e-215 751.5 617 65.6
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.1e-214 750.4 608 65.3
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 2.5e-214 749.2 640 62.3
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 3.2e-214 748.8 619 62.7
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 5.5e-214 748.0 615 63.9
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 1.0e-212 743.8 620 64.7
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 6.8e-212 741.1 614 63.0
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 6.8e-212 741.1 614 62.9
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 9.8e-211 737.3 607 63.4
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 2.8e-210 735.7 611 63.5
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 8.3e-210 734.2 639 62.9
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 2.7e-208 729.2 591 65.3
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 1.9e-206 723.0 752 54.8
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 3.2e-206 722.2 613 63.5
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 9.4e-206 720.7 617 62.7
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 1.2e-205 720.3 619 61.2
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 1.6e-205 719.9 613 62.8
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 4.7e-205 718.4 543 67.2
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 8.8e-204 714.1 611 61.9
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 1.5e-203 713.4 570 66.3
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 2.0e-203 713.0 585 64.4
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 2.6e-203 712.6 609 63.5
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.4e-201 706.8 617 59.6
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 2.4e-201 706.1 612 60.9
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 4.1e-201 705.3 615 62.4
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 4.1e-201 705.3 618 59.7
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 3.5e-200 702.2 618 59.4
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 7.7e-200 701.0 617 59.5
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 1.7e-199 699.9 615 61.8
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 2.3e-199 699.5 614 61.1
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 5.0e-199 698.4 615 59.0
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 8.6e-199 697.6 613 58.9
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 3.3e-198 695.7 616 61.2
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 3.3e-198 695.7 566 64.7
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 2.1e-197 693.0 617 60.6
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 2.3e-196 689.5 618 62.0
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 5.2e-196 688.3 627 61.2
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 4.4e-195 685.3 617 60.0
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 2.2e-194 682.9 615 57.7
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 4.9e-194 681.8 617 60.1
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 2.4e-193 679.5 617 59.5
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 4.1e-193 678.7 609 59.9
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 1.6e-192 676.8 611 60.1
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 2.7e-192 676.0 608 59.5
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 2.7e-192 676.0 724 53.7
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 6.6e-191 671.4 620 57.9
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 1.1e-190 670.6 611 59.6
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 1.1e-190 670.6 666 56.5
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 4.7e-189 665.2 618 59.1
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 4.7e-189 665.2 611 58.6
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 3.1e-188 662.5 599 59.1
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 1.2e-187 660.6 599 58.9
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 1.2e-187 660.6 599 58.9
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 1.5e-187 660.2 599 59.1
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 2.6e-187 659.4 609 57.6
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 5.8e-187 658.3 599 58.9
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 9.8e-187 657.5 611 58.6
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 2.2e-186 656.4 599 59.3
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 2.2e-186 656.4 712 52.7
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 5.0e-183 645.2 618 60.4
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 6.6e-183 644.8 623 57.5
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 2.5e-182 642.9 593 59.0
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 4.3e-182 642.1 630 56.0
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 8.9e-180 634.4 611 56.5
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.5e-179 633.6 625 56.6
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 4.4e-179 632.1 635 54.8
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 1.4e-172 610.5 607 57.3
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 1.5e-171 607.1 560 59.5
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.3e-170 604.0 617 55.1
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 4.1e-169 599.0 611 55.5
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 1.0e-167 594.3 549 58.7
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 1.5e-166 590.5 623 54.9
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 2.7e-160 569.7 614 52.9
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 1.7e-159 567.0 502 60.2
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 8.7e-159 564.7 686 48.5
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 9.6e-158 561.2 431 68.0
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 1.6e-157 560.5 618 53.2
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 2.1e-157 560.1 472 63.6
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 2.1e-157 560.1 426 74.9
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 1.6e-152 543.9 344 81.4
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 1.1e-150 537.7 614 49.8
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.2e-147 527.7 484 57.9
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 5.8e-147 525.4 390 68.7
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 2.1e-144 516.9 422 63.7
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 1.4e-140 504.2 376 68.4
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.3e-138 497.7 469 58.8
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 1.9e-137 493.8 611 46.6
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 6.7e-135 485.3 608 45.6
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 2.1e-133 480.3 618 43.2
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 1.8e-132 477.2 485 56.1
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 5.3e-132 475.7 385 66.5
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 1.4e-129 467.6 423 59.1
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 5.5e-129 465.7 477 54.3
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 3.9e-127 459.5 576 48.4
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 4.4e-118 429.5 480 52.7
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 8.5e-114 415.2 385 59.0
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 2.5e-113 413.7 365 62.2
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.7e-109 401.0 458 51.1
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 7.0e-108 395.6 435 52.2
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 4.5e-107 392.9 572 45.5
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 1.8e-103 380.9 607 39.4
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 2.2e-101 374.0 488 48.6
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 9.4e-97 358.6 228 78.1
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.1e-84 318.5 371 50.1
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 2.1e-80 304.3 216 69.9
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 2.2e-77 294.3 228 67.1
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 3.3e-73 280.4 311 51.1
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 1.6e-72 278.1 196 71.4
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 3.6e-72 276.9 199 70.9
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.1e-71 275.4 358 47.8
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 1.5e-70 271.6 512 40.4
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.7e-69 268.1 181 72.9
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 1.9e-68 264.6 206 67.5
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 2.4e-68 264.2 292 53.1
Lalb_Chr06g0169761 Lupinus albus HOM05D003810 ORTHO05D004416 1.2e-62 245.4 227 57.3
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 1.1e-60 238.8 263 51.0
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.7e-58 231.5 357 45.7
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 3.3e-57 227.3 165 68.5
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 4.0e-55 220.3 232 48.3
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.4e-52 211.1 303 44.9
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 3.1e-47 194.1 182 60.4
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.7e-45 188.3 205 53.2
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 4.9e-45 186.8 169 57.4
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 4.9e-45 186.8 169 57.4
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 1.6e-43 181.8 120 75.8
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 1.9e-41 174.9 233 44.2
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 9.9e-38 162.5 228 42.1
Actinidia03659 Actinidia chinensis HOM05D003810 ORTHO05D004416 7.1e-36 156.4 158 55.1
TPR.G30194 Trifolium pratense HOM05D003810 ORTHO05D004416 5.8e-30 136.7 191 47.6
Oeu005536.2 Olea europaea HOM05D003810 ORTHO05D004416 7.9e-27 126.3 165 46.1
SMO031G0001 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 5.1e-26 123.6 122 49.2
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 3.7e-24 117.5 748 23.5
SHI21692 Sapria himalayana HOM05D003810 ORTHO05D004416 3.4e-22 110.9 95 60.0
SalBow3G3831 Salvia bowleyana HOM05D003810 ORTHO05D004416 1.3e-21 109.0 124 50.0
SHI21696 Sapria himalayana HOM05D003810 ORTHO05D004416 4.9e-21 107.1 108 56.5
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 7.1e-20 103.2 80 62.5
TAR629G2180 Trochodendron aralioides HOM05D003810 ORTHO05D004416 6.0e-19 100.1 65 72.3
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 5.1e-18 97.1 181 35.4
ClCG09G022970 Citrullus lanatus HOM05D003810 ORTHO05D004416 8.7e-18 96.3 67 71.6
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 1.5e-17 95.5 73 64.4
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 2.5e-17 94.7 76 61.8
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 5.7e-17 93.6 77 59.7
Sabra05G0051600 Salix brachista HOM05D003810 ORTHO05D004416 9.7e-17 92.8 252 33.7
Hund08475 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.6e-16 92.0 58 75.9
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 6.3e-16 90.1 80 55.0
PRCOL_00004489 Prasinoderma coloniale HOM05D003810 ORTHO05D004416 5.9e-14 83.6 531 22.8
SalBow3G0229 Salvia bowleyana HOM05D003810 ORTHO05D004416 2.5e-12 78.2 75 53.3
CAN.G11.19 Capsicum annuum HOM05D003810 ORTHO05D004416 7.9e-11 73.2 56 60.7
CDE07G1690 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 1.0e-10 72.8 82 50.0
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 1.4e-10 72.4 53 64.2
MD08G1246200 Malus domestica HOM05D003810 ORTHO05D004416 8.8e-10 69.7 164 34.1
TPR.G30768 Trifolium pratense HOM05D003810 ORTHO05D004416 8.8e-10 69.7 65 60.0
Cre10.g466550 Chlamydomonas reinhardtii HOM05D003810 ORTHO05D004416 1.1e-09 69.3 141 31.2
Lsat_1_v5_gn_2_75840 Lactuca sativa HOM05D001134 ORTHO05D004416 1.3e-08 65.9 96 42.7
Hund17711 Selenicereus undatus HOM05D003810 ORTHO05D004416 4.8e-08 63.9 50 66.0
Nitab4.5_0001303g0160 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.1e-07 62.8 201 30.8
A07p35570 Brassica napus HOM05D003810 ORTHO05D004416 6.9e-07 60.1 67 52.2
MD08G1246500 Malus domestica HOM05D003810 ORTHO05D004416 1.2e-06 59.3 42 73.8
BraA07t31145Z Brassica rapa HOM05D003810 ORTHO05D004416 2.0e-06 58.5 61 55.7
CAN.G1077.9 Capsicum annuum HOM05D000222 ORTHO05D012343 2.6e-06 58.2 159 30.8


User provided reference genes

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