Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p047567 Quercus lobata HOM05D004755 ORTHO05D006137 8.3e-208 726.9 382 100.0
QL11p042321 Quercus lobata HOM05D004755 ORTHO05D006137 2.6e-185 652.1 442 81.7
Cfa004975 Carpinus fangiana HOM05D004755 ORTHO05D006137 1.1e-167 593.6 442 72.9
CiPaw.05G060900 Carya illinoinensis HOM05D004755 ORTHO05D006137 4.0e-162 575.1 442 70.6
Potri.T125104 Populus trichocarpa HOM05D004755 ORTHO05D006137 1.1e-159 567.0 441 69.2
Potri.004G150700 Populus trichocarpa HOM05D004755 ORTHO05D006137 1.9e-159 566.2 441 69.4
Atru.chr5.2935 Acer truncatum HOM05D004755 ORTHO05D006137 2.4e-159 565.8 442 69.5
Potri.009G112184 Populus trichocarpa HOM05D004755 ORTHO05D006137 2.4e-159 565.8 441 69.2
Sabra09G0085600 Salix brachista HOM05D004755 ORTHO05D006137 4.2e-159 565.1 441 68.9
Prupe.8G104600 Prunus persica HOM05D004755 ORTHO05D006137 2.1e-158 562.8 442 68.6
MD10G1082200 Malus domestica HOM05D004755 ORTHO05D006137 2.7e-158 562.4 440 68.2
Manes.17G099000 Manihot esculenta HOM05D004755 ORTHO05D006137 6.0e-158 561.2 441 68.0
Actinidia00497 Actinidia chinensis HOM05D004755 ORTHO05D006137 1.5e-156 556.6 442 67.9
Ca_20846_v3 Cicer arietinum L. HOM05D004755 ORTHO05D006137 7.3e-156 554.3 393 73.3
Sabra04G0100200 Salix brachista HOM05D004755 ORTHO05D006137 1.3e-155 553.5 440 68.6
Haze_02419 Corylus avellana HOM05D004755 ORTHO05D006137 2.1e-155 552.7 442 70.4
CSS0003833 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 8.1e-155 550.8 442 67.9
CSS0019785 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 8.1e-155 550.8 442 67.9
Ciclev10027868m.g Citrus clementina HOM05D004755 ORTHO05D006137 1.1e-154 550.4 442 67.2
Lj5A201G28 Lonicera japonica HOM05D004755 ORTHO05D006137 9.0e-154 547.4 442 67.4
RcHm_v2.0_Chr6g0262551 Rosa chinensis HOM05D004755 ORTHO05D006137 2.0e-153 546.2 442 67.0
Gohir.D04G159300 Gossypium hirsutum HOM05D004755 ORTHO05D006137 2.6e-153 545.8 442 66.3
Lj3g0013592 Lotus japonicus HOM05D004755 ORTHO05D006137 5.8e-153 544.7 440 68.0
Glyma.12G045800 Glycine max HOM05D004755 ORTHO05D006137 7.6e-153 544.3 442 67.4
Thecc.02G121800 Theobroma cacao HOM05D004755 ORTHO05D006137 9.9e-153 543.9 441 66.7
Gorai.012G146700 Gossypium raimondii HOM05D004755 ORTHO05D006137 1.3e-152 543.5 442 66.1
TWI75G0180 Tripterygium wilfordii HOM05D004755 ORTHO05D006137 1.3e-152 543.5 443 66.1
DCAR_022097 Daucus carota HOM05D004755 ORTHO05D006137 2.2e-152 542.7 442 67.0
Gohir.A04G117600 Gossypium hirsutum HOM05D004755 ORTHO05D006137 4.9e-152 541.6 442 66.1
VMungo1127G1904 Vigna mungo HOM05D004755 ORTHO05D006137 1.2e-150 537.0 442 66.3
FvH4_2g08030 Fragaria vesca HOM05D004755 ORTHO05D006137 2.7e-150 535.8 442 65.6
Duzib132G0528 Durio zibethinus HOM05D004755 ORTHO05D006137 3.5e-150 535.4 442 65.4
Phvul.011G047700 Phaseolus vulgaris HOM05D004755 ORTHO05D006137 7.9e-150 534.3 442 66.5
COL.COLO4_32463 Corchorus olitorius HOM05D004755 ORTHO05D006137 1.0e-149 533.9 442 65.2
Eucgr.I01243 Eucalyptus grandis HOM05D004755 ORTHO05D006137 3.0e-149 532.3 442 64.9
Glyma.11G120700 Glycine max HOM05D004755 ORTHO05D006137 3.9e-149 531.9 441 66.2
FAN15G3513 Fragaria x ananassa HOM05D004755 ORTHO05D006137 4.3e-148 528.5 450 64.0
GSVIVG01031913001 Vitis vinifera HOM05D004755 ORTHO05D006137 5.6e-148 528.1 442 65.4
arahy.Tifrunner.gnm1.ann1.CRQ4KQ Arachis hypogaea HOM05D004755 ORTHO05D006137 7.4e-148 527.7 428 67.3
PGR142G0564 Punica granatum HOM05D004755 ORTHO05D006137 9.6e-148 527.3 441 66.2
arahy.Tifrunner.gnm1.ann1.A0G0F1 Arachis hypogaea HOM05D004755 ORTHO05D006137 4.8e-147 525.0 428 67.1
Medtr4g069090 Medicago truncatula HOM05D004755 ORTHO05D006137 4.8e-147 525.0 442 65.2
Psat7g185120 Pisum sativum HOM05D004755 ORTHO05D006137 8.1e-147 524.2 442 64.5
Lalb_Chr01g0002741 Lupinus albus HOM05D004755 ORTHO05D006137 1.4e-146 523.5 442 65.8
Nn5g29490 Nelumbo nucifera HOM05D004755 ORTHO05D006137 4.0e-146 521.9 444 63.3
FAN24G1877 Fragaria x ananassa HOM05D004755 ORTHO05D006137 2.0e-145 519.6 467 62.1
Cpa.g.sc62.108 Carica papaya HOM05D004755 ORTHO05D006137 5.8e-145 518.1 465 61.5
FAN20G2502 Fragaria x ananassa HOM05D004755 ORTHO05D006137 8.4e-144 514.2 458 62.4
Hund06220 Selenicereus undatus HOM05D004755 ORTHO05D006137 1.9e-143 513.1 441 64.2
Nitab4.5_0004287g0030 Nicotiana tabacum HOM05D004755 ORTHO05D006137 2.5e-143 512.7 442 62.2
MBI16_g13149_MAGBIO Magnolia biondii HOM05D004755 ORTHO05D006137 3.2e-143 512.3 440 63.0
CAN.G322.107 Capsicum annuum HOM05D004755 ORTHO05D006137 4.2e-143 511.9 442 61.8
Lalb_Chr03g0025821 Lupinus albus HOM05D004755 ORTHO05D006137 4.2e-143 511.9 442 64.0
Peaxi162Scf00016g01034 Petunia axillaris HOM05D004755 ORTHO05D006137 2.7e-142 509.2 442 61.8
Sopen01g051540 Solanum pennellii HOM05D004755 ORTHO05D006137 3.0e-141 505.8 442 61.3
Sc18g0004710 Simmondsia chinensis HOM05D004755 ORTHO05D006137 8.7e-141 504.2 440 61.8
Thhalv10020129m.g Eutrema salsugineum HOM05D004755 ORTHO05D006137 1.9e-140 503.1 441 61.0
AUR62016701 Chenopodium quinoa HOM05D004755 ORTHO05D006137 2.5e-140 502.7 445 61.8
AUR62011360 Chenopodium quinoa HOM05D004755 ORTHO05D006137 5.7e-140 501.5 445 62.2
Solyc01g109350.3 Solanum lycopersicum HOM05D004755 ORTHO05D006137 5.7e-140 501.5 442 60.9
Cc02_g17900 Coffea canephora HOM05D004755 ORTHO05D006137 2.8e-139 499.2 442 61.8
CsaV3_7G010210 Cucumis sativus L. HOM05D004755 ORTHO05D006137 1.4e-138 496.9 443 62.1
Aa31LG8G5700 Aethionema arabicum HOM05D004755 ORTHO05D006137 2.4e-138 496.1 441 60.5
MELO3C018404.2 Cucumis melo HOM05D004755 ORTHO05D006137 5.3e-138 495.0 443 61.6
Sp3g16960 Schrenkiella parvula HOM05D004755 ORTHO05D006137 5.3e-138 495.0 441 59.9
A03p40880 Brassica napus HOM05D004755 ORTHO05D006137 1.2e-137 493.8 441 59.0
BraA03t13246Z Brassica rapa HOM05D004755 ORTHO05D006137 1.2e-137 493.8 441 59.0
Sed0014712 Sechium edule HOM05D004755 ORTHO05D006137 1.5e-137 493.4 443 61.6
Migut.B00268 Erythranthe guttata HOM05D004755 ORTHO05D006137 2.0e-137 493.0 443 59.1
AL3G32250 Arabidopsis lyrata HOM05D004755 ORTHO05D006137 1.3e-136 490.3 441 59.6
AT3G18860 Arabidopsis thaliana HOM05D004755 ORTHO05D006137 2.2e-136 489.6 441 59.9
Nitab4.5_0004280g0140 Nicotiana tabacum HOM05D004755 ORTHO05D006137 2.9e-136 489.2 430 61.4
SGA_v2.0_scaffold58G20570 Striga asiatica HOM05D004755 ORTHO05D006137 3.8e-136 488.8 447 59.1
Carub.0003s1870 Capsella rubella HOM05D004755 ORTHO05D006137 3.2e-135 485.7 441 59.4
CARHR094310 Cardamine hirsuta HOM05D004755 ORTHO05D006137 3.2e-135 485.7 442 60.2
THA.LOC104798811 Tarenaya hassleriana HOM05D004755 ORTHO05D006137 4.2e-135 485.3 441 59.4
A05p30690 Brassica napus HOM05D004755 ORTHO05D006137 7.1e-135 484.6 441 57.6
BcaB06g25940 Brassica carinata HOM05D004755 ORTHO05D006137 9.3e-135 484.2 441 58.0
BraA05t21911Z Brassica rapa HOM05D004755 ORTHO05D006137 1.2e-134 483.8 441 57.6
EL10Ac9g21762 Beta vulgaris HOM05D004755 ORTHO05D006137 3.5e-134 482.3 427 62.1
C05p46570 Brassica napus HOM05D004755 ORTHO05D006137 4.6e-134 481.9 441 57.8
vmacro02143 Vaccinium macrocarpon HOM05D004755 ORTHO05D006137 1.3e-133 480.3 483 56.5
PSO170G5490 Papaver somniferum HOM05D004755 ORTHO05D006137 2.3e-133 479.6 439 59.5
Ah.01g006160 Amaranthus hybridus HOM05D004755 ORTHO05D006137 3.9e-133 478.8 440 59.1
BolC3t17278H Brassica oleracea HOM05D004755 ORTHO05D006137 3.9e-133 478.8 441 57.4
BolC5t33386H Brassica oleracea HOM05D004755 ORTHO05D006137 5.1e-133 478.4 441 57.4
Aqoxy5G01708 Aquilegia oxysepala HOM05D004755 ORTHO05D006137 4.3e-132 475.3 440 58.6
PSO700G0113 Papaver somniferum HOM05D004755 ORTHO05D006137 2.2e-131 473.0 439 59.0
TAR628G0908 Trochodendron aralioides HOM05D004755 ORTHO05D006137 2.8e-131 472.6 403 63.8
ClCG02G005310 Citrullus lanatus HOM05D004755 ORTHO05D006137 1.4e-130 470.3 425 62.1
BcaC01g03670 Brassica carinata HOM05D004755 ORTHO05D006137 3.4e-129 465.7 441 56.5
ECA240G4701 Erigeron canadensis HOM05D004755 ORTHO05D006137 4.5e-129 465.3 441 57.6
C03p49850 Brassica napus HOM05D004755 ORTHO05D006137 1.1e-127 460.7 485 52.4
Lsat_1_v5_gn_9_109321 Lactuca sativa HOM05D004755 ORTHO05D006137 2.1e-126 456.4 441 59.2
HanXRQChr08g0216571 Helianthus annuus HOM05D004755 ORTHO05D006137 1.1e-122 444.1 406 60.3
unitig_746.g26712 Utricularia gibba HOM05D004755 ORTHO05D006137 5.0e-120 435.3 440 55.5
Hma1.2p1_0066F.1_g036770 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 1.1e-119 434.1 319 72.4
BcaNung06950 Brassica carinata HOM05D004755 ORTHO05D006137 9.4e-119 431.0 387 58.4
HPP92_001848 Vanilla planifolia HOM05D004755 ORTHO05D006137 2.1e-118 429.9 425 58.1
Os07g0123700 Oryza sativa ssp. japonica HOM05D004755 ORTHO05D006137 2.7e-118 429.5 442 54.3
SalBow6G2421 Salvia bowleyana HOM05D004755 ORTHO05D006137 1.4e-117 427.2 454 54.4
Rhsim11G0173300 Rhododendron simsii HOM05D004755 ORTHO05D006137 3.3e-116 422.5 442 55.4
ATR0733G059 Amborella trichopoda HOM05D004755 ORTHO05D006137 1.2e-113 414.1 438 51.8
Dinv23556 Davidia involucrata HOM05D004755 ORTHO05D006137 4.7e-110 402.1 328 64.0
Oeu010560.1 Olea europaea HOM05D004755 ORTHO05D006137 4.4e-108 395.6 275 72.7
TPR.G28052 Trifolium pratense HOM05D004755 ORTHO05D006137 3.7e-107 392.5 352 59.9
Mapoly0131s0025 Marchantia polymorpha HOM05D004755 ORTHO05D006137 2.8e-91 339.7 447 43.0
Pp3c13_21390 Physcomitrium patens HOM05D004755 ORTHO05D006137 4.2e-87 325.9 449 41.2
QL11p041479 Quercus lobata HOM05D004755 ORTHO05D006137 3.7e-83 312.8 373 52.5
SMO146G0209 Selaginella moellendorffii HOM05D004755 ORTHO05D006137 8.3e-67 258.5 450 37.8
CBR_g24445 Chara braunii HOM05D004755 ORTHO05D006137 3.2e-66 256.5 437 37.3
AagrBONN_evm.TU.Sc2ySwM_368.721 Anthoceros agrestis HOM05D004755 ORTHO05D006137 1.2e-57 228.0 339 39.5
Lsat_1_v5_gn_3_56800 Lactuca sativa HOM05D004755 ORTHO05D006137 4.9e-43 179.5 137 70.8
QL11p041511 Quercus lobata HOM05D004755 ORTHO05D006137 1.7e-35 154.5 90 96.7
QL11p041806 Quercus lobata HOM05D004755 ORTHO05D006137 2.9e-35 153.7 90 96.7
Zm00001eb299230 Zea mays HOM05D004755 ORTHO05D006137 6.4e-35 152.5 199 45.2
Thecc.09G060700 Theobroma cacao HOM05D004755 ORTHO05D006137 1.9e-34 151.0 102 79.4
QL11p041742 Quercus lobata HOM05D004755 ORTHO05D006137 3.5e-33 146.7 90 93.3
Oeu010556.1 Olea europaea HOM05D004755 ORTHO05D006137 7.4e-31 139.0 171 47.4
SHI05427 Sapria himalayana HOM05D004755 ORTHO05D006137 4.0e-29 133.3 183 44.3
Glyma.01G127800 Glycine max HOM05D004755 ORTHO05D006137 1.2e-28 131.7 90 81.1
TPR.G18928 Trifolium pratense HOM05D004755 ORTHO05D006137 2.6e-28 130.6 93 77.4
Lsat_1_v5_gn_9_93780 Lactuca sativa HOM05D004755 ORTHO05D006137 3.8e-27 126.7 100 65.0
Ca_08127_v3 Cicer arietinum L. HOM05D009313 ORTHO05D011011 1.1e-26 125.2 85 70.6
Lsat_1_v5_gn_3_67820 Lactuca sativa HOM05D001195 ORTHO05D001138 7.1e-26 122.5 82 74.4
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 3.5e-25 120.2 81 75.3
SEGI_27412 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 8.2e-22 109.0 96 56.2
Haze_01851 Corylus avellana HOM05D004755 ORTHO05D006137 2.5e-18 97.4 336 31.5
MCO13G192 Micromonas commoda HOM05D004755 ORTHO05D006137 3.2e-18 97.1 458 25.3
SEGI_11122 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 2.7e-17 94.0 89 58.4
FAN02G3646 Fragaria x ananassa HOM05D004755 ORTHO05D006137 3.5e-17 93.6 78 59.0
PGSC0003DMG400025184 Solanum tuberosum HOM05D004755 ORTHO05D006137 4.6e-17 93.2 68 73.5
Cfa023312 Carpinus fangiana HOM05D004755 ORTHO05D006137 8.7e-16 89.0 461 24.5
QL11p042075 Quercus lobata HOM05D004755 ORTHO05D006137 1.5e-12 78.2 49 79.6
SEGI_36377 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 3.6e-09 67.0 61 55.7


User provided reference genes

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