Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 1.4e-310 1068.9 610 100.0
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 8.0e-221 770.8 548 76.1
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 1.1e-180 637.5 552 65.0
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 2.4e-177 626.3 556 60.4
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 2.1e-173 613.2 556 62.1
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 9.9e-171 604.4 550 58.4
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 1.7e-170 603.6 548 62.8
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 6.4e-170 601.7 548 62.2
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 9.6e-166 587.8 530 58.5
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 9.6e-166 587.8 557 59.6
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 8.1e-165 584.7 547 59.8
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 1.8e-164 583.6 549 62.8
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 2.4e-164 583.2 536 57.5
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 6.9e-164 581.6 544 58.6
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 3.4e-163 579.3 545 57.4
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 9.9e-163 577.8 552 61.6
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 3.2e-161 572.8 582 54.0
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 4.2e-161 572.4 552 60.9
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 7.9e-160 568.2 560 62.1
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.3e-159 567.4 537 55.7
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 1.3e-159 567.4 565 54.5
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.3e-159 566.6 537 55.7
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 5.1e-159 565.5 537 55.5
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 1.9e-158 563.5 544 58.5
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 1.9e-158 563.5 537 55.5
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 5.6e-158 562.0 536 56.3
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.6e-157 560.5 574 58.2
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 9.9e-155 551.2 536 57.3
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.9e-154 549.7 537 57.0
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 4.2e-153 545.8 548 54.9
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 2.3e-151 540.0 546 54.6
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 1.5e-150 537.3 546 53.8
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 7.4e-150 535.0 539 56.2
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 2.4e-148 530.0 540 52.2
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 1.2e-147 527.7 391 75.4
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 4.9e-146 522.3 553 56.1
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 1.4e-145 520.8 546 56.8
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 7.1e-145 518.5 530 53.8
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 2.7e-144 516.5 520 58.3
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 8.7e-143 511.5 547 56.9
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 5.7e-142 508.8 556 53.6
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 1.8e-140 503.8 558 56.5
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 2.5e-137 493.4 548 51.1
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.3e-135 486.9 510 51.6
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 3.0e-135 486.5 545 53.2
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 3.3e-134 483.0 551 52.3
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 7.4e-134 481.9 540 49.1
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 8.2e-133 478.4 548 52.9
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 1.2e-131 474.6 545 53.4
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 4.5e-131 472.6 522 53.4
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 1.9e-129 467.2 544 50.6
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 3.2e-129 466.5 546 53.5
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 1.2e-128 464.5 520 47.1
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 6.7e-127 458.8 546 52.2
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 3.7e-125 453.0 550 48.2
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 1.1e-124 451.4 543 51.7
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 1.1e-124 451.4 559 48.7
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 7.7e-123 445.3 542 51.3
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 1.7e-122 444.1 538 52.6
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 2.9e-122 443.4 551 51.7
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 3.8e-122 443.0 559 49.6
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 4.2e-121 439.5 530 45.8
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 5.5e-121 439.1 540 51.1
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 1.6e-120 437.6 566 45.1
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 1.0e-119 434.9 544 49.4
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 1.8e-119 434.1 548 51.5
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 2.2e-117 427.2 545 51.9
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 1.8e-116 424.1 523 45.7
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 1.2e-115 421.4 527 45.0
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 2.9e-114 416.8 472 52.1
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 3.8e-114 416.4 524 51.0
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 3.8e-114 416.4 527 45.7
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 8.0e-112 408.7 392 55.1
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 1.7e-109 401.0 386 60.6
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 9.1e-108 395.2 554 42.4
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 4.5e-107 392.9 554 48.0
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 9.4e-105 385.2 555 44.0
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 2.7e-104 383.6 541 46.6
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 7.5e-102 375.6 555 45.0
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 8.3e-101 372.1 378 63.8
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 4.5e-99 366.3 492 43.5
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 1.3e-98 364.8 506 44.3
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 1.7e-98 364.4 542 40.4
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 3.8e-98 363.2 542 42.8
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 8.5e-98 362.1 249 72.7
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 1.2e-96 358.2 469 52.5
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 1.5e-94 351.3 367 52.0
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 2.0e-94 350.9 403 49.1
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 7.7e-91 339.0 539 42.7
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 1.3e-85 321.6 341 51.9
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 5.9e-83 312.8 568 35.7
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 1.0e-82 312.0 474 44.1
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 2.5e-81 307.4 530 37.2
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 1.8e-79 301.2 520 37.1
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 1.9e-73 281.2 525 35.0
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 5.6e-73 279.6 516 36.0
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 5.8e-70 269.6 352 44.6
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 4.1e-68 263.5 239 55.6
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 1.3e-66 258.5 257 52.1
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 7.3e-65 252.7 581 31.2
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 3.1e-63 247.3 155 79.4
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 2.2e-61 241.1 311 45.0
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 1.0e-58 232.3 315 42.2
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 1.9e-57 228.0 642 28.8
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 6.0e-51 206.5 306 50.0
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 2.5e-49 201.1 369 36.6
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 1.3e-45 188.7 115 73.0
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 8.4e-45 186.0 114 74.6
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 1.3e-42 178.7 250 48.8
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 1.5e-38 165.2 115 67.8
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 3.4e-38 164.1 107 70.1
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 2.9e-37 161.0 117 63.2
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 7.1e-36 156.4 671 25.0
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 2.3e-34 151.4 117 62.4
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 1.9e-33 148.3 107 64.5
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 7.4e-33 146.4 95 62.1
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 9.6e-33 146.0 105 60.0
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 2.1e-32 144.8 115 58.3
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 2.8e-32 144.4 106 61.3
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 8.1e-32 142.9 114 54.4
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 2.3e-26 124.8 92 63.0
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 2.3e-26 124.8 101 57.4
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 2.3e-26 124.8 150 45.3
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 1.1e-23 115.9 100 51.0
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 1.8e-23 115.2 98 51.0
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 1.2e-22 112.5 81 58.0
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 5.9e-22 110.2 487 26.3
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 2.9e-21 107.8 85 65.9
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 7.2e-20 103.2 85 63.5
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 1.6e-19 102.1 91 56.0
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 6.1e-19 100.1 81 50.6
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 8.7e-18 96.3 73 54.8
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 4.8e-16 90.5 81 44.4
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 1.8e-15 88.6 96 40.6
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 1.9e-12 78.6 85 43.5
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 4.2e-12 77.4 90 36.7
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 2.1e-11 75.1 64 43.8
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 2.1e-11 75.1 54 68.5
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.1e-11 75.1 75 46.7
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 2.7e-11 74.7 77 40.3
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.9e-10 70.9 69 44.9
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.9e-10 70.9 69 44.9
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 8.8e-10 69.7 76 39.5
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 2.6e-09 68.2 41 75.6
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 7.4e-09 66.6 96 42.7
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 7.4e-09 66.6 51 52.9
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.3e-08 65.9 57 52.6
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 2.2e-08 65.1 47 61.7
Glyma.19G185100 Glycine max HOM05D004644 ORTHO05D005700 1.1e-07 62.8 47 57.4
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 6.9e-07 60.1 115 27.0
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 9.1e-07 59.7 63 57.1
QL03p002371 Quercus lobata HOM05D007534 ORTHO05D009540 7.7e-06 56.6 29 89.7


User provided reference genes

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