Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 0.0e+00 1719.1 1125 100.0
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 9.3e-308 1060.4 1106 75.1
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 3.2e-300 1035.4 1105 71.9
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 1.3e-296 1023.5 1106 71.6
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 5.3e-295 1018.1 1125 71.5
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 6.5e-293 1011.1 1104 71.0
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 1.0e-290 1003.8 1104 70.7
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 3.3e-289 998.8 1106 71.5
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 3.7e-288 995.3 1125 69.9
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 6.3e-288 994.6 1108 70.7
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 8.2e-288 994.2 1125 69.8
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 4.1e-287 991.9 1125 67.1
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 4.5e-286 988.4 1106 70.3
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 2.9e-285 985.7 1106 70.2
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 7.2e-284 981.1 1125 70.4
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 7.9e-283 977.6 1130 69.8
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 1.1e-281 973.8 1130 68.4
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 5.7e-281 971.5 1126 69.3
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 2.0e-278 963.0 1107 68.8
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 5.0e-277 958.4 1125 69.0
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 3.2e-276 955.7 1125 69.4
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 2.1e-275 953.0 1125 59.6
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 2.7e-275 952.6 1160 55.9
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 2.0e-270 936.4 1106 67.5
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 5.9e-270 934.9 1106 67.5
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 2.5e-268 929.5 1108 68.7
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 7.2e-268 927.9 1122 60.4
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 9.4e-268 927.5 1128 66.8
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 1.0e-266 924.1 1115 66.1
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 1.8e-266 923.3 1119 67.5
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 2.6e-265 919.5 1128 67.6
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 5.7e-265 918.3 1106 59.0
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 7.4e-265 917.9 1104 66.4
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 7.4e-265 917.9 1125 66.6
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 9.7e-265 917.5 1117 68.0
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 3.1e-263 912.5 1112 67.4
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 5.9e-262 908.3 1115 67.4
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 1.0e-261 907.5 1117 68.2
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 1.3e-261 907.1 1106 65.1
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.7e-261 906.7 1130 66.7
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 6.5e-261 904.8 1130 66.7
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 6.5e-261 904.8 1106 66.5
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 2.1e-259 899.8 1109 66.8
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 2.7e-259 899.4 1130 66.5
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 5.2e-258 895.2 1130 66.3
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 8.8e-258 894.4 1116 67.0
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 4.4e-257 892.1 1116 67.3
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 4.4e-257 892.1 1130 66.3
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 4.4e-257 892.1 1125 67.4
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 1.3e-256 890.6 1113 66.4
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 4.8e-256 888.6 1126 65.9
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 1.8e-255 886.7 1156 65.7
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 2.0e-254 883.2 1128 66.4
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 2.1e-251 873.2 1127 65.7
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 4.0e-250 869.0 1127 65.7
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 6.8e-250 868.2 1107 66.4
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 2.6e-249 866.3 1127 65.3
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 4.9e-248 862.1 1127 64.9
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 1.1e-247 860.9 1121 65.0
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 1.4e-247 860.5 1136 60.9
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 1.8e-247 860.1 1130 65.3
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 2.4e-247 859.8 1127 65.3
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 1.6e-246 857.1 1104 64.6
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 3.8e-245 852.4 1128 62.3
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 1.1e-244 850.9 1122 62.9
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 1.5e-244 850.5 1126 64.7
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 3.3e-244 849.4 1133 61.9
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 3.6e-243 845.9 1133 64.3
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 2.6e-241 839.7 910 65.6
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 9.8e-241 837.8 1106 58.4
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 2.2e-240 836.6 1106 63.5
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 2.9e-240 836.3 1151 53.8
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 3.7e-240 835.9 1106 61.5
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 6.3e-240 835.1 1107 62.1
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 4.1e-239 832.4 1129 62.8
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 2.7e-238 829.7 1128 62.2
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 5.9e-238 828.6 1129 59.0
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 3.9e-237 825.9 1122 61.1
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 2.5e-236 823.2 1118 64.8
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 8.0e-235 818.1 1106 61.4
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 6.8e-234 815.1 1135 59.8
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 8.9e-234 814.7 1126 62.0
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 1.6e-230 803.9 1127 45.1
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 2.5e-228 796.6 1126 62.0
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 8.1e-227 791.6 1126 61.7
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 1.8e-226 790.4 1126 61.8
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 3.1e-226 789.6 1126 61.7
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 5.2e-226 788.9 1134 62.4
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 1.1e-223 781.2 1129 61.5
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 7.1e-223 778.5 1129 62.2
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 6.6e-221 771.9 889 70.9
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 1.4e-215 754.2 992 67.2
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 1.2e-214 751.1 1130 61.3
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 3.0e-213 746.5 1131 60.5
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 1.5e-212 744.2 1112 58.8
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 1.1e-210 738.0 1111 60.9
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 1.5e-209 734.2 1099 59.4
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 3.0e-197 693.3 1109 55.7
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 6.6e-197 692.2 1196 52.5
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 2.1e-195 687.2 1024 61.8
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 2.1e-187 660.6 1113 56.6
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 1.8e-181 641.0 1093 54.7
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 4.3e-172 609.8 1117 48.0
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 3.0e-165 587.0 1030 55.9
Zm00001eb004160 Zea mays HOM05D005316 ORTHO05D006495 2.0e-161 574.3 868 54.7
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 5.2e-149 533.1 1099 50.8
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 2.2e-147 527.7 1104 50.2
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 8.8e-141 505.8 1116 48.5
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 8.8e-141 505.8 1116 48.5
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 7.7e-137 492.7 1140 50.7
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 5.0e-136 490.0 1113 49.1
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.2e-116 425.6 754 53.3
CDE06G1287 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 1.9e-114 418.3 816 37.5
Lalb_Chr20g0112451 Lupinus albus HOM05D005316 ORTHO05D006495 8.9e-109 399.4 310 68.7
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 5.8e-108 396.7 596 44.0
Cre10.g438700 Chlamydomonas reinhardtii HOM05D005316 ORTHO05D006495 6.4e-91 340.1 901 48.7
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 4.2e-82 310.8 931 40.2
PRCOL_00001463 Prasinoderma coloniale HOM05D005316 ORTHO05D006495 7.6e-60 236.9 654 44.2
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 2.5e-50 205.3 144 71.5
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 2.6e-47 195.3 124 77.4
Psat0s3791g0160 Pisum sativum HOM05D005316 ORTHO05D006495 6.5e-43 180.6 120 72.5
Gohir.A13G089800 Gossypium hirsutum HOM05D005316 ORTHO05D006495 2.1e-41 175.6 185 51.9
Psat2g167720 Pisum sativum HOM05D005316 ORTHO05D006495 1.1e-29 136.7 120 59.2
Lj3C1008T12 Lonicera japonica HOM05D005316 ORTHO05D006495 1.2e-28 133.3 84 81.0
Lalb_Chr20g0112411 Lupinus albus HOM05D005316 ORTHO05D006495 2.5e-26 125.6 91 68.1
PGSC0003DMG400023254 Solanum tuberosum HOM05D005316 ORTHO05D006495 3.2e-26 125.2 110 60.9
SEGI_29002 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 5.5e-26 124.4 94 64.9
Lalb_Chr20g0112421 Lupinus albus HOM05D005316 ORTHO05D006495 1.2e-25 123.2 77 81.8
SHI18789 Sapria himalayana HOM05D005316 ORTHO05D006495 9.8e-23 113.6 79 73.4
Psat3g057760 Pisum sativum HOM05D005316 ORTHO05D006495 2.4e-21 109.0 272 29.8
Psat5g092920 Pisum sativum HOM05D000083 ORTHO05D001244 6.5e-19 100.9 86 60.5
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 2.5e-18 99.0 69 72.5
Sc24g0000540 Simmondsia chinensis HOM05D005316 ORTHO05D006495 4.7e-17 94.7 69 65.2
SEGI_05684 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 6.1e-17 94.4 108 50.0
PGSC0003DMG400013159 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.7e-14 86.3 70 65.7
PGSC0003DMG400036928 Solanum tuberosum HOM05D005316 ORTHO05D006495 5.9e-12 77.8 120 44.2
SEGI_04707 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 4.3e-10 71.6 70 52.9
RcHm_v2.0_Chr7g0191911 Rosa chinensis HOM05D005316 ORTHO05D006495 3.6e-09 68.6 49 73.5
Cfa003664 Carpinus fangiana HOM05D005316 ORTHO05D006495 8.0e-09 67.4 58 60.3
Psat3g191240 Pisum sativum HOM05D005316 ORTHO05D006495 1.0e-08 67.0 50 68.0
EL10Ac5g11429 Beta vulgaris HOM05D003769 ORTHO05D004521 5.2e-08 64.7 164 26.2
A04p25240 Brassica napus HOM05D000836 ORTHO05D000709 6.8e-08 64.3 189 27.5
BraA04t18027Z Brassica rapa HOM05D000836 ORTHO05D000709 6.8e-08 64.3 185 26.5
CANSAT78G1202 Cannabis sativa HOM05D000836 ORTHO05D000709 6.8e-08 64.3 143 25.2
Zm00001eb160220 Zea mays HOM05D003769 ORTHO05D004521 6.8e-08 64.3 222 23.9
Zm00001eb258660 Zea mays HOM05D000836 ORTHO05D000709 6.8e-08 64.3 143 28.7
Ah.02g115340 Amaranthus hybridus HOM05D003769 ORTHO05D004521 1.5e-07 63.2 164 28.0
HPP92_022912 Vanilla planifolia HOM05D003769 ORTHO05D004521 2.0e-07 62.8 209 23.9
CiPaw.01G122500 Carya illinoinensis HOM05D000836 ORTHO05D000709 2.6e-07 62.4 153 24.2
Lalb_Chr03g0036201 Lupinus albus HOM05D000836 ORTHO05D000709 4.4e-07 61.6 150 25.3
Sed0000820 Sechium edule HOM05D000836 ORTHO05D000709 5.7e-07 61.2 125 27.2
EL10Ac5g11428 Beta vulgaris HOM05D003769 ORTHO05D004521 7.5e-07 60.8 157 26.1
DCAR_027817 Daucus carota HOM05D003769 ORTHO05D004521 2.2e-06 59.3 191 25.1
Pp3c19_12460 Physcomitrium patens HOM05D004758 ORTHO05D006063 4.9e-06 58.2 208 24.5
Prupe.1G005700 Prunus persica HOM05D000836 ORTHO05D000709 4.9e-06 58.2 145 23.4
CSS0000649 Camellia sinensis var. sinensis HOM05D003769 ORTHO05D004521 6.4e-06 57.8 215 21.9
Cpa.g.sc494.1 Carica papaya HOM05D000836 ORTHO05D000709 6.4e-06 57.8 150 24.0
CiPaw.15G128600 Carya illinoinensis HOM05D003769 ORTHO05D004521 6.4e-06 57.8 215 21.4
FvH4_4g00520 Fragaria vesca HOM05D000836 ORTHO05D000709 6.4e-06 57.8 145 24.1
FAN17G0254 Fragaria x ananassa HOM05D000836 ORTHO05D000709 6.4e-06 57.8 145 24.8
FAN22G1004 Fragaria x ananassa HOM05D000836 ORTHO05D000709 6.4e-06 57.8 145 24.1
Aa31LG5G4350 Aethionema arabicum HOM05D000836 ORTHO05D000709 8.3e-06 57.4 123 26.8
FAN12G4032 Fragaria x ananassa HOM05D000836 ORTHO05D000709 8.3e-06 57.4 139 24.5
Lalb_Chr01g0010231 Lupinus albus HOM05D000836 ORTHO05D000709 8.3e-06 57.4 123 26.0


User provided reference genes

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