Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p020316 Quercus lobata HOM05D002825 ORTHO05D003824 4.0e-116 421.4 204 100.0
Lalb_Chr18g0061131 Lupinus albus HOM05D002825 ORTHO05D003824 9.3e-41 171.0 185 54.1
Haze_10006 Corylus avellana HOM05D002825 ORTHO05D003824 1.3e-39 167.2 185 54.1
Cfa004457 Carpinus fangiana HOM05D002825 ORTHO05D003824 3.9e-39 165.6 185 53.5
PGR142G0082 Punica granatum HOM05D002825 ORTHO05D003824 3.9e-39 165.6 184 51.6
FAN18G3010 Fragaria x ananassa HOM05D002825 ORTHO05D003824 6.7e-39 164.9 185 51.9
RcHm_v2.0_Chr7g0220071 Rosa chinensis HOM05D002825 ORTHO05D003824 1.1e-38 164.1 185 52.4
Ca_17359_v3 Cicer arietinum L. HOM05D002825 ORTHO05D003824 1.5e-38 163.7 185 50.8
FvH4_5g27880 Fragaria vesca HOM05D002825 ORTHO05D003824 1.5e-38 163.7 185 51.9
FAN04G1220 Fragaria x ananassa HOM05D002825 ORTHO05D003824 2.5e-38 162.9 185 51.9
FAN08G2274 Fragaria x ananassa HOM05D002825 ORTHO05D003824 5.7e-38 161.8 185 51.9
RcHm_v2.0_Chr3g0472581 Rosa chinensis HOM05D002825 ORTHO05D003824 4.5e-35 152.1 185 49.7
Glyma.12G164700 Glycine max HOM05D002825 ORTHO05D003824 2.9e-34 149.4 185 47.0
MELO3C021840.2 Cucumis melo HOM05D002825 ORTHO05D003824 1.9e-33 146.7 176 49.4
GSVIVG01023159001 Vitis vinifera HOM05D002825 ORTHO05D003824 2.5e-33 146.4 186 45.2
Potri.004G227800 Populus trichocarpa HOM05D002825 ORTHO05D003824 3.2e-33 146.0 185 47.6
CsaV3_2G036260 Cucumis sativus L. HOM05D002825 ORTHO05D003824 5.5e-33 145.2 175 49.1
Glyma.16G001000 Glycine max HOM05D002825 ORTHO05D003824 7.2e-33 144.8 185 47.0
Sed0018539 Sechium edule HOM05D002825 ORTHO05D003824 7.2e-33 144.8 174 48.3
Actinidia01627 Actinidia chinensis HOM05D002825 ORTHO05D003824 2.7e-32 142.9 186 45.2
Potri.003G002950 Populus trichocarpa HOM05D002825 ORTHO05D003824 2.7e-32 142.9 185 47.6
Sabra01G0172800 Salix brachista HOM05D002825 ORTHO05D003824 3.6e-32 142.5 185 47.0
Medtr8g102650 Medicago truncatula HOM05D002825 ORTHO05D003824 5.1e-31 138.7 91 72.5
CSS0030972 Camellia sinensis var. sinensis HOM05D002825 ORTHO05D003824 9.7e-30 134.4 174 46.6
Rhsim05G0174700 Rhododendron simsii HOM05D002825 ORTHO05D003824 2.8e-29 132.9 186 41.9
DCAR_022278 Daucus carota HOM05D002825 ORTHO05D003824 1.1e-28 131.0 186 43.0
Thhalv10006738m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 1.1e-28 131.0 185 43.8
ECA236G4782 Erigeron canadensis HOM05D002825 ORTHO05D003824 1.4e-28 130.6 186 41.4
Lsat_1_v5_gn_7_77221 Lactuca sativa HOM05D002825 ORTHO05D003824 2.4e-28 129.8 186 42.5
BcaC07g41827 Brassica carinata HOM05D002825 ORTHO05D003824 1.2e-27 127.5 203 40.9
C08p49080 Brassica napus HOM05D002825 ORTHO05D003824 1.5e-27 127.1 202 41.1
Solyc01g103160.3 Solanum lycopersicum HOM05D002825 ORTHO05D003824 1.5e-27 127.1 186 38.7
Sopen01g045570 Solanum pennellii HOM05D002825 ORTHO05D003824 1.5e-27 127.1 186 38.7
HanXRQChr08g0228491 Helianthus annuus HOM05D002825 ORTHO05D003824 2.6e-27 126.3 163 44.8
Nitab4.5_0001057g0030 Nicotiana tabacum HOM05D002825 ORTHO05D003824 2.6e-27 126.3 186 39.2
BcaC05g24908 Brassica carinata HOM05D002825 ORTHO05D003824 3.4e-27 125.9 185 43.8
Cpa.g.sc113.4 Carica papaya HOM05D002825 ORTHO05D003824 3.4e-27 125.9 175 45.1
DCAR_003286 Daucus carota HOM05D002825 ORTHO05D003824 4.5e-27 125.6 193 39.9
Nitab4.5_0001129g0060 Nicotiana tabacum HOM05D002825 ORTHO05D003824 4.5e-27 125.6 186 38.2
PGSC0003DMG400024905 Solanum tuberosum HOM05D002825 ORTHO05D003824 4.5e-27 125.6 186 38.2
Aa31LG1G4670 Aethionema arabicum HOM05D002825 ORTHO05D003824 1.7e-26 123.6 183 42.6
BcaB08g37339 Brassica carinata HOM05D002825 ORTHO05D003824 1.7e-26 123.6 185 41.6
CAN.G855.39 Capsicum annuum HOM05D002825 ORTHO05D003824 2.2e-26 123.2 184 38.0
C05p08380 Brassica napus HOM05D002825 ORTHO05D003824 3.8e-26 122.5 177 42.9
BolC5t29589H Brassica oleracea HOM05D002825 ORTHO05D003824 3.8e-26 122.5 177 42.9
A09p65140 Brassica napus HOM05D002825 ORTHO05D003824 5.0e-26 122.1 202 40.1
BraA09t41857Z Brassica rapa HOM05D002825 ORTHO05D003824 5.0e-26 122.1 202 40.1
CARHR010370 Cardamine hirsuta HOM05D002825 ORTHO05D003824 1.4e-25 120.6 181 42.0
Actinidia26189 Actinidia chinensis HOM05D000331 ORTHO05D003399 3.2e-25 119.4 84 70.2
BraA08t35321Z Brassica rapa HOM05D002825 ORTHO05D003824 3.2e-25 119.4 199 37.7
A06p06900 Brassica napus HOM05D002825 ORTHO05D003824 4.2e-25 119.0 177 41.8
BraA06t23906Z Brassica rapa HOM05D002825 ORTHO05D003824 4.2e-25 119.0 177 41.8
A08p34080 Brassica napus HOM05D002825 ORTHO05D003824 9.4e-25 117.9 199 37.2
Lsat_1_v5_gn_5_91740 Lactuca sativa HOM05D002825 ORTHO05D003824 7.9e-24 114.8 89 67.4
C08p13530 Brassica napus HOM05D002825 ORTHO05D003824 1.0e-23 114.4 185 38.4
BolC8t48989H Brassica oleracea HOM05D002825 ORTHO05D003824 1.0e-23 114.4 185 38.4
BcaC07g38540 Brassica carinata HOM05D002825 ORTHO05D003824 2.3e-23 113.2 195 37.4
VMungo0540G0272 Vigna mungo HOM05D002825 ORTHO05D003824 3.0e-23 112.8 149 46.3
CiPaw.05G002300 Carya illinoinensis HOM05D002825 ORTHO05D003824 3.9e-23 112.5 141 48.9
Dinv29621 Davidia involucrata HOM05D002825 ORTHO05D003824 3.9e-23 112.5 78 69.2
Carub.0001s0966 Capsella rubella HOM05D002825 ORTHO05D003824 5.2e-23 112.1 175 41.7
AL1G21000 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 6.7e-23 111.7 175 41.1
Manes.07G028200 Manihot esculenta HOM05D002825 ORTHO05D003824 6.7e-23 111.7 193 38.3
Phvul.006G221100 Phaseolus vulgaris HOM05D002825 ORTHO05D003824 1.5e-22 110.5 148 45.3
Medtr7g069290 Medicago truncatula HOM05D002825 ORTHO05D003824 5.7e-22 108.6 91 59.3
Atru.chr6.351 Acer truncatum HOM05D002825 ORTHO05D003824 9.7e-22 107.8 171 41.5
Atru.chr6.402 Acer truncatum HOM05D002825 ORTHO05D003824 9.7e-22 107.8 171 41.5
Lj6g0026509 Lotus japonicus HOM05D002825 ORTHO05D003824 9.7e-22 107.8 149 45.6
Gohir.A05G405100 Gossypium hirsutum HOM05D002825 ORTHO05D003824 2.2e-21 106.7 185 39.5
TAR376G0418 Trochodendron aralioides HOM05D002825 ORTHO05D003824 2.2e-21 106.7 98 55.1
TPR.G26202 Trifolium pratense HOM05D002825 ORTHO05D003824 2.8e-21 106.3 142 45.1
Gohir.D04G010500 Gossypium hirsutum HOM05D002825 ORTHO05D003824 3.7e-21 105.9 185 38.9
Peaxi162Scf00011g01628 Petunia axillaris HOM05D002825 ORTHO05D003824 4.8e-21 105.5 174 35.6
Aqoxy6G00055 Aquilegia oxysepala HOM05D002825 ORTHO05D003824 6.3e-21 105.1 91 57.1
Medtr7g069270 Medicago truncatula HOM05D002825 ORTHO05D003824 1.4e-20 104.0 91 59.3
ClCG10G007350 Citrullus lanatus HOM05D002825 ORTHO05D003824 7.0e-20 101.7 146 43.2
Medtr7g069230 Medicago truncatula HOM05D002825 ORTHO05D003824 1.0e-18 97.8 85 60.0
Atru.chr13.1188 Acer truncatum HOM05D002825 ORTHO05D003824 1.7e-18 97.1 147 41.5
Eucgr.I02789 Eucalyptus grandis HOM05D002825 ORTHO05D003824 2.2e-18 96.7 142 42.3
TWI63G1692 Tripterygium wilfordii HOM05D002825 ORTHO05D003824 3.8e-18 95.9 148 42.6
CANSAT80G1108 Cannabis sativa HOM05D002825 ORTHO05D003824 8.5e-18 94.7 141 41.8
Psat7g131880 Pisum sativum HOM05D002825 ORTHO05D003824 8.5e-18 94.7 143 42.7
HPP92_001276 Vanilla planifolia HOM05D002825 ORTHO05D003824 1.5e-17 94.0 136 39.0
Ciclev10000271m.g Citrus clementina HOM05D002825 ORTHO05D003824 4.2e-17 92.4 150 38.0
QL02p102471 Quercus lobata HOM05D002825 ORTHO05D003824 9.4e-17 91.3 47 93.6
QL02p103093 Quercus lobata HOM05D002825 ORTHO05D003824 9.4e-17 91.3 47 93.6
Duzib128G0132 Durio zibethinus HOM05D002825 ORTHO05D003824 1.5e-14 84.0 141 40.4
Ah.11g046920 Amaranthus hybridus HOM05D002825 ORTHO05D003824 2.6e-14 83.2 141 35.5
COL.COLO4_19503 Corchorus olitorius HOM05D002825 ORTHO05D003824 2.6e-14 83.2 138 40.6
AT1G10270 Arabidopsis thaliana HOM05D002825 ORTHO05D003824 3.3e-14 82.8 149 37.6
THA.LOC104823676 Tarenaya hassleriana HOM05D002825 ORTHO05D003824 5.7e-14 82.0 148 38.5
Prupe.1G583600 Prunus persica HOM05D002825 ORTHO05D003824 7.5e-14 81.6 53 73.6
Gorai.012G012400 Gossypium raimondii HOM05D002825 ORTHO05D003824 1.3e-13 80.9 141 39.0
ATR1089G152 Amborella trichopoda HOM05D002825 ORTHO05D003824 1.7e-13 80.5 85 45.9
Sp1g08860 Schrenkiella parvula HOM05D002825 ORTHO05D003824 2.2e-13 80.1 142 37.3
Hund15406 Selenicereus undatus HOM05D002825 ORTHO05D003824 2.2e-13 80.1 141 34.8
Thecc.10G188300 Theobroma cacao HOM05D002825 ORTHO05D003824 2.2e-13 80.1 142 38.7
AUR62000337 Chenopodium quinoa HOM05D002825 ORTHO05D003824 3.7e-13 79.3 140 34.3
ECA236G2567 Erigeron canadensis HOM05D002825 ORTHO05D003824 3.7e-13 79.3 156 32.7
Lj9A281T41 Lonicera japonica HOM05D002825 ORTHO05D003824 6.3e-13 78.6 143 35.0
Hma1.2p1_0052F.1_g029920 Hydrangea macrophylla HOM05D002825 ORTHO05D003824 2.4e-12 76.6 142 32.4
Oeu002155.1 Olea europaea HOM05D002825 ORTHO05D003824 5.3e-12 75.5 78 48.7
THA.LOC104823675 Tarenaya hassleriana HOM05D002825 ORTHO05D003824 5.3e-12 75.5 145 36.6
MSTRG.5190 Avicennia marina HOM05D002825 ORTHO05D003824 1.2e-11 74.3 144 34.0
EL10Ac6g14013 Beta vulgaris HOM05D002825 ORTHO05D003824 1.6e-11 73.9 157 33.1
Migut.N00860 Erythranthe guttata HOM05D002825 ORTHO05D003824 2.0e-11 73.6 144 34.7
MD15G1441500 Malus domestica HOM05D002825 ORTHO05D003824 2.0e-11 73.6 48 75.0
CDE05G3421 Ceratophyllum demersum HOM05D002825 ORTHO05D003824 2.7e-11 73.2 116 37.9
CDE05G3403 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 3.5e-11 72.8 87 43.7
Cc02_g23470 Coffea canephora HOM05D002825 ORTHO05D003824 4.5e-11 72.4 147 32.7
Sc06g0000730 Simmondsia chinensis HOM05D002825 ORTHO05D003824 4.5e-11 72.4 79 49.4
Sc19g0003420 Simmondsia chinensis HOM05D002825 ORTHO05D003824 4.5e-11 72.4 49 69.4
Nn8g41098 Nelumbo nucifera HOM05D002825 ORTHO05D003824 5.9e-11 72.0 143 36.4
TAR628G0533 Trochodendron aralioides HOM05D002825 ORTHO05D003824 7.7e-11 71.6 99 41.4
Oeu044734.1 Olea europaea HOM05D002825 ORTHO05D003824 2.2e-10 70.1 142 31.7
BcaC01g05137 Brassica carinata HOM05D002825 ORTHO05D003824 5.0e-10 68.9 84 46.4
BolC3t15357H Brassica oleracea HOM05D002825 ORTHO05D003824 5.0e-10 68.9 84 46.4
Rhsim05G0116200 Rhododendron simsii HOM05D002825 ORTHO05D003824 6.5e-10 68.6 143 32.9
Dinv29670 Davidia involucrata HOM05D002825 ORTHO05D003824 1.1e-09 67.8 150 33.3
Aqoxy7G01216 Aquilegia oxysepala HOM05D002825 ORTHO05D003824 1.5e-09 67.4 86 46.5
Aqoxy3G01338 Aquilegia oxysepala HOM05D002825 ORTHO05D003824 2.5e-09 66.6 79 45.6
C03p30080 Brassica napus HOM05D002825 ORTHO05D003824 7.2e-09 65.1 151 34.4
MBI16_g21730_MAGBIO Magnolia biondii HOM05D002825 ORTHO05D003824 9.4e-09 64.7 61 50.8
AL5G42790 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 2.1e-08 63.5 92 42.4
AL4G44550 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 3.6e-08 62.8 87 47.1
Lj4g0012938 Lotus japonicus HOM05D002825 ORTHO05D003824 6.1e-08 62.0 40 75.0
Carub.0005s2724 Capsella rubella HOM05D002825 ORTHO05D003824 8.0e-08 61.6 83 43.4
AT3G49240 Arabidopsis thaliana HOM05D006156 ORTHO05D007699 1.4e-07 60.8 85 38.8
CARHR158100 Cardamine hirsuta HOM05D006156 ORTHO05D007699 2.3e-07 60.1 75 38.7
Peaxi162Scf00740g00002 Petunia axillaris HOM05D006156 ORTHO05D007699 4.0e-07 59.3 87 36.8
unitig_699.g19843 Utricularia gibba HOM05D002825 ORTHO05D003824 4.0e-07 59.3 54 51.9
Carub.0005s1546 Capsella rubella HOM05D006156 ORTHO05D007699 6.8e-07 58.5 85 37.6
HPP92_003447 Vanilla planifolia HOM05D002825 ORTHO05D003824 8.8e-07 58.2 95 33.7
Thhalv10023497m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 1.2e-06 57.8 103 39.8
Nitab4.5_0007167g0040 Nicotiana tabacum HOM05D006156 ORTHO05D007699 1.2e-06 57.8 87 36.8
Psat5g077680 Pisum sativum HOM05D006156 ORTHO05D007699 1.5e-06 57.4 83 34.9
TPR.G19387 Trifolium pratense HOM05D006156 ORTHO05D007699 1.5e-06 57.4 83 34.9
TWI23G0795 Tripterygium wilfordii HOM05D006156 ORTHO05D007699 1.5e-06 57.4 85 36.5
HPP92_008817 Vanilla planifolia HOM05D006156 ORTHO05D007699 1.5e-06 57.4 91 33.0
Aqoxy6G01599 Aquilegia oxysepala HOM05D002825 ORTHO05D003824 2.0e-06 57.0 86 38.4
FvH4_2g09580 Fragaria vesca HOM05D006156 ORTHO05D007699 2.0e-06 57.0 85 36.5
PSO339G5268 Papaver somniferum HOM05D002825 ORTHO05D003824 2.0e-06 57.0 97 34.0
PSO384G0639 Papaver somniferum HOM05D002825 ORTHO05D003824 2.0e-06 57.0 97 34.0
SGA_v2.0_scaffold100G29546 Striga asiatica HOM05D002825 ORTHO05D003824 2.0e-06 57.0 53 52.8
CARHR170890 Cardamine hirsuta HOM05D002825 ORTHO05D003824 2.6e-06 56.6 86 40.7
FAN24G0640 Fragaria x ananassa HOM05D006156 ORTHO05D007699 2.6e-06 56.6 85 36.5
Oeu000151.1 Olea europaea HOM05D002825 ORTHO05D003824 3.4e-06 56.2 48 54.2
TPR.G40676 Trifolium pratense HOM05D002825 ORTHO05D003824 3.4e-06 56.2 37 67.6
C01p31050 Brassica napus HOM05D006156 ORTHO05D007699 4.4e-06 55.8 85 35.3
C03p30090 Brassica napus HOM05D002825 ORTHO05D003824 4.4e-06 55.8 144 30.6
BolC1t03040H Brassica oleracea HOM05D006156 ORTHO05D007699 4.4e-06 55.8 85 35.3
Glyma.06G128900 Glycine max HOM05D006156 ORTHO05D007699 4.4e-06 55.8 83 34.9
AL5G28970 Arabidopsis lyrata HOM05D006156 ORTHO05D007699 7.5e-06 55.1 85 34.1
BcaC09g49933 Brassica carinata HOM05D006156 ORTHO05D007699 7.5e-06 55.1 85 35.3
AL5G43690 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 9.8e-06 54.7 97 36.1
Sopen03g023030 Solanum pennellii HOM05D006156 ORTHO05D007699 9.8e-06 54.7 87 34.5


User provided reference genes

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