Gene: AT3G49240

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G49240
  • Transcript Identifier AT3G49240.1
  • Gene Type Coding gene
  • Location Chr3 : 18256086-18257975 : positive

Gene Family Information

  • ID HOM05D006156
  • #Genes/#Species 129/86
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G49240.1
  • symbol emb1796
  • full_name embryo defective 1796
  • uniprot Q9M3A8

Descriptions

  • Description Pentatricopeptide repeat (PPR) superfamily protein
  • Computational description embryo defective 1796 (emb1796); FUNCTIONS IN: ATP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: glutamine-rich protein 23 (TAIR:AT1G10270.1); Has 36492 Blast hits to 13612 proteins in 345 species: Archae - 36; Bacteria - 141; Metazoa - 341; Fungi - 345; Plants - 34345; Viruses - 0; Other Eukaryotes - 1284 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009793
IMP
NAS
Gene Ontologyembryo development ending in seed dormancy1
GO:0006349
IMP
Gene Ontologyregulation of gene expression by genetic imprinting2
GO:0009960
IMP
Gene Ontologyendosperm development2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IDA
GOA DatabaseATP binding
GO:0005524
HDA
Gene OntologyATP binding3
GO:0005515
IPI
Gene Ontologyprotein binding4
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IEA
GOA Databasemitochondrion
GO:0005739
IDA, HDA
ISM
Gene Ontologymitochondrion2 3
GO:0009507
IDA, HDA
Gene Ontologychloroplast4 5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002885 Pentatricopeptide repeat
IPR011990 Tetratricopeptide-like helical domain superfamily
Mapman id Description
35.1 not assigned.annotated