Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 2.1e-70 268.9 132 100.0
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 8.7e-64 246.9 127 95.3
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 1.1e-58 229.9 126 88.9
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 4.2e-58 228.0 126 84.9
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 5.4e-58 227.6 126 84.1
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 5.4e-58 227.6 126 84.1
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 5.4e-58 227.6 126 85.7
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 5.4e-58 227.6 126 85.7
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 9.3e-58 226.9 127 85.0
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 9.3e-58 226.9 127 85.0
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 9.3e-58 226.9 127 85.0
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 9.3e-58 226.9 126 84.9
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.2e-57 226.5 126 85.7
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 1.2e-57 226.5 126 85.7
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 1.2e-57 226.5 126 86.5
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 1.6e-57 226.1 127 85.8
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 1.6e-57 226.1 126 85.7
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 1.6e-57 226.1 127 85.0
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 2.1e-57 225.7 126 84.9
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.1e-57 225.7 126 84.9
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.1e-57 225.7 126 84.9
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 2.7e-57 225.3 126 84.9
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 2.7e-57 225.3 127 84.3
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 3.5e-57 224.9 126 84.9
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 3.5e-57 224.9 126 84.9
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 4.6e-57 224.6 127 84.3
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 4.6e-57 224.6 126 84.1
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 4.6e-57 224.6 127 82.7
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 6.0e-57 224.2 126 84.9
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 6.0e-57 224.2 126 81.0
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 6.0e-57 224.2 126 86.5
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 7.9e-57 223.8 127 83.5
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 7.9e-57 223.8 127 83.5
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 7.9e-57 223.8 127 85.0
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 7.9e-57 223.8 127 84.3
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 7.9e-57 223.8 126 84.1
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 7.9e-57 223.8 126 84.9
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 7.9e-57 223.8 127 85.0
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 1.0e-56 223.4 126 83.3
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 1.0e-56 223.4 126 83.3
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 1.0e-56 223.4 127 81.9
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 1.0e-56 223.4 126 84.9
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.3e-56 223.0 126 83.3
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.3e-56 223.0 126 83.3
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 1.3e-56 223.0 126 84.9
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 1.8e-56 222.6 126 83.3
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 1.8e-56 222.6 126 84.1
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.8e-56 222.6 126 83.3
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 2.3e-56 222.2 126 83.3
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 2.3e-56 222.2 126 83.3
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 2.3e-56 222.2 126 83.3
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 2.3e-56 222.2 126 82.5
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 2.3e-56 222.2 127 82.7
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 3.0e-56 221.9 125 85.6
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 3.0e-56 221.9 126 84.9
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 3.0e-56 221.9 126 84.1
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 3.9e-56 221.5 126 83.3
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 3.9e-56 221.5 126 84.9
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 3.9e-56 221.5 126 84.9
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 3.9e-56 221.5 126 84.9
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 3.9e-56 221.5 126 84.9
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 3.9e-56 221.5 126 84.9
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 3.9e-56 221.5 126 84.9
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 3.9e-56 221.5 126 84.9
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 3.9e-56 221.5 126 85.7
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 3.9e-56 221.5 126 84.9
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 3.9e-56 221.5 126 83.3
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 3.9e-56 221.5 126 84.9
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 3.9e-56 221.5 126 83.3
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 5.1e-56 221.1 126 84.1
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 5.1e-56 221.1 126 84.9
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 5.1e-56 221.1 126 84.9
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 5.1e-56 221.1 126 83.3
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 5.1e-56 221.1 126 83.3
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 5.1e-56 221.1 126 83.3
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 6.7e-56 220.7 126 84.1
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 8.7e-56 220.3 126 84.1
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 8.7e-56 220.3 126 85.7
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 8.7e-56 220.3 126 85.7
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 8.7e-56 220.3 126 84.9
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 8.7e-56 220.3 126 84.9
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 8.7e-56 220.3 126 85.7
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 8.7e-56 220.3 126 82.5
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 8.7e-56 220.3 126 84.9
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 8.7e-56 220.3 126 82.5
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 8.7e-56 220.3 126 83.3
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 1.1e-55 219.9 126 80.2
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 1.5e-55 219.5 126 81.7
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.9e-55 219.2 127 81.9
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 1.9e-55 219.2 126 83.3
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 2.5e-55 218.8 126 83.3
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 2.5e-55 218.8 126 81.7
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 2.5e-55 218.8 126 81.7
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 2.5e-55 218.8 126 81.7
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 3.3e-55 218.4 126 83.3
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 3.3e-55 218.4 126 81.7
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 4.3e-55 218.0 126 83.3
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 4.3e-55 218.0 126 82.5
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 5.6e-55 217.6 125 82.4
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 5.6e-55 217.6 126 83.3
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 5.6e-55 217.6 125 83.2
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 5.6e-55 217.6 126 81.7
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 5.6e-55 217.6 126 81.7
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 7.4e-55 217.2 126 81.0
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 7.4e-55 217.2 127 81.9
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 7.4e-55 217.2 126 81.0
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 7.4e-55 217.2 126 81.7
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 9.6e-55 216.9 126 81.0
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 9.6e-55 216.9 126 81.7
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 9.6e-55 216.9 126 81.7
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 9.6e-55 216.9 125 82.4
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 9.6e-55 216.9 126 81.7
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.3e-54 216.5 126 81.0
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 1.3e-54 216.5 126 80.2
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 1.3e-54 216.5 126 81.7
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 1.6e-54 216.1 126 81.0
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 1.6e-54 216.1 125 81.6
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 1.6e-54 216.1 127 81.1
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 2.1e-54 215.7 126 81.7
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 2.8e-54 215.3 126 81.7
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 4.8e-54 214.5 125 79.2
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 6.2e-54 214.2 125 80.0
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 1.4e-53 213.0 125 78.4
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 1.4e-53 213.0 126 81.0
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 3.4e-52 208.4 125 80.0
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 7.6e-52 207.2 120 83.3
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 2.7e-49 198.7 125 73.6
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.9e-47 192.6 125 71.2
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.5e-44 183.0 111 80.2
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 1.0e-43 180.3 107 81.3
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 8.4e-43 177.2 105 79.0
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 1.6e-41 172.9 95 84.2
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 2.1e-41 172.6 95 84.2
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 4.6e-41 171.4 127 66.1
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 2.9e-35 152.1 89 79.8
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 2.7e-33 145.6 125 58.4
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 2.3e-32 142.5 89 77.5
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 1.5e-31 139.8 73 93.2
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.3e-31 138.7 95 70.5
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.7e-30 136.3 127 52.8
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 2.2e-30 136.0 76 85.5
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 8.2e-22 107.5 58 86.2
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 5.3e-21 104.8 58 84.5
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 3.3e-15 85.5 126 42.1
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.1e-13 80.5 45 82.2
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 7.7e-12 74.3 107 35.5
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 1.2e-09 67.0 112 35.7
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 1.2e-09 67.0 39 79.5


User provided reference genes

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