Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 1.1e-150 536.6 260 100.0
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 4.4e-120 434.9 258 81.4
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 4.9e-119 431.4 260 80.0
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 5.1e-116 421.4 258 79.8
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 4.3e-115 418.3 260 76.9
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 5.6e-115 417.9 260 77.3
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 5.6e-115 417.9 260 77.3
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 2.8e-114 415.6 260 76.2
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 4.7e-114 414.8 260 77.3
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 6.2e-114 414.5 258 77.5
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 8.9e-113 410.6 258 78.3
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 3.4e-112 408.7 260 75.8
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 3.4e-112 408.7 260 75.8
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 7.6e-112 407.5 260 75.0
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 1.3e-111 406.8 259 75.3
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 2.2e-111 406.0 257 75.1
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 2.9e-111 405.6 260 74.2
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 3.8e-111 405.2 260 74.6
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 2.4e-110 402.5 260 73.5
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 1.2e-109 400.2 258 73.3
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 1.6e-109 399.8 257 74.7
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 3.5e-109 398.7 262 74.8
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 3.5e-109 398.7 260 73.8
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 3.5e-109 398.7 259 74.5
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 4.6e-109 398.3 258 72.9
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 6.0e-109 397.9 258 74.4
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 7.8e-109 397.5 258 73.6
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 1.3e-108 396.7 258 69.8
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 1.7e-108 396.4 261 72.8
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 2.3e-108 396.0 257 74.7
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 6.6e-108 394.4 258 72.9
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.9e-107 392.9 258 73.6
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 3.3e-107 392.1 258 73.6
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 4.3e-107 391.7 260 71.5
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 1.2e-106 390.2 258 73.6
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 1.6e-106 389.8 260 72.7
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 2.8e-106 389.0 257 73.2
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 4.7e-106 388.3 260 71.5
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 6.2e-106 387.9 246 75.6
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.1e-105 387.1 258 72.5
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 1.4e-105 386.7 252 73.0
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 4.0e-105 385.2 243 75.3
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 1.2e-104 383.6 260 71.5
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 1.2e-104 383.6 259 70.7
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 1.5e-104 383.3 258 70.2
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 2.0e-104 382.9 230 79.6
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 2.0e-104 382.9 259 72.2
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 2.6e-104 382.5 258 70.5
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 3.4e-104 382.1 260 70.0
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 3.4e-104 382.1 246 75.6
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 5.8e-104 381.3 260 69.2
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 7.6e-104 380.9 259 71.8
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 9.9e-104 380.6 260 71.5
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 2.2e-103 379.4 259 71.8
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 3.8e-103 378.6 247 74.1
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 6.4e-103 377.9 257 69.3
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 6.4e-103 377.9 259 70.7
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 8.4e-103 377.5 260 68.5
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 8.4e-103 377.5 260 69.6
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 8.4e-103 377.5 260 69.2
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 8.4e-103 377.5 259 71.8
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 1.1e-102 377.1 260 69.6
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 1.4e-102 376.7 258 70.2
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 1.4e-102 376.7 260 70.8
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 1.4e-102 376.7 288 64.9
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 2.4e-102 375.9 260 67.7
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 2.4e-102 375.9 298 63.4
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 3.2e-102 375.6 260 68.5
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 5.4e-102 374.8 257 67.7
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 5.4e-102 374.8 260 68.1
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 1.2e-101 373.6 255 67.5
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 1.2e-101 373.6 260 68.8
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 2.1e-101 372.9 260 68.5
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 2.1e-101 372.9 309 60.8
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 2.7e-101 372.5 261 67.8
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 2.7e-101 372.5 260 68.8
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 4.6e-101 371.7 260 67.3
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 2.3e-100 369.4 261 67.4
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 2.3e-100 369.4 261 67.4
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 3.0e-100 369.0 261 67.0
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 5.1e-100 368.2 258 68.6
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 5.1e-100 368.2 257 66.5
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 1.5e-99 366.7 258 68.6
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 4.3e-99 365.2 290 62.4
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 5.6e-99 364.8 325 57.2
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 8.1e-98 360.9 255 65.9
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 1.5e-96 356.7 258 65.1
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 3.4e-96 355.5 258 65.5
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 2.9e-95 352.4 258 64.3
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 1.8e-92 343.2 260 65.0
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 3.3e-91 339.0 224 72.8
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 1.6e-90 336.7 222 73.4
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 4.5e-88 328.6 260 61.5
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 1.7e-87 326.6 224 70.5
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 2.9e-87 325.9 220 70.9
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 6.7e-84 314.7 298 58.4
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 6.7e-84 314.7 298 52.0
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 1.1e-81 307.4 253 57.7
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 1.0e-79 300.8 228 65.8
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.1e-78 297.4 257 59.9
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 7.9e-77 291.2 265 52.8
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 5.7e-75 285.0 257 54.9
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 6.5e-71 271.6 318 44.0
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 5.0e-63 245.4 259 49.8
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 1.2e-61 240.7 251 49.0
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 3.0e-60 236.1 253 47.8
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 9.1e-57 224.6 341 42.8
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 9.4e-54 214.5 144 73.6
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 1.6e-53 213.8 248 44.4
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 5.2e-52 208.8 257 41.6
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 4.8e-50 202.2 123 78.9
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 1.0e-44 184.5 126 68.3
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 5.5e-38 162.2 140 57.9
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 1.5e-35 154.1 95 73.7
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 4.1e-33 146.0 98 69.4
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 2.8e-26 123.2 83 69.9
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 2.8e-26 123.2 83 69.9
FAN25G1846 Fragaria x ananassa HOM05D005979 ORTHO05D007848 4.3e-22 109.4 75 69.3
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 3.0e-20 103.2 74 67.6
SEGI_37896 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 3.4e-19 99.8 55 81.8
A01p41990 Brassica napus HOM05D005979 ORTHO05D041676 7.3e-14 82.0 162 35.2
Glyma.08G011202 Glycine max HOM05D005979 ORTHO05D007848 9.5e-14 81.6 80 55.0
BraA01t04540Z Brassica rapa HOM05D005979 ORTHO05D007848 3.6e-13 79.7 49 69.4
A01p41070 Brassica napus HOM05D005979 ORTHO05D007848 1.8e-12 77.4 49 67.3
BNapus_Darmor_BZH_scaffold_78p00640 Brassica napus HOM05D005979 ORTHO05D007848 1.8e-12 77.4 49 67.3
CBR_g27740 Chara braunii HOM05D000738 ORTHO05D000675 3.4e-11 73.2 77 46.8
BolC1t05773H Brassica oleracea HOM05D005979 ORTHO05D007848 3.7e-10 69.7 43 67.4
BraA01t04267Z Brassica rapa HOM05D005979 ORTHO05D041676 2.1e-08 63.9 37 73.0
BcaC09g47773 Brassica carinata HOM05D005979 ORTHO05D007848 4.6e-08 62.8 38 68.4
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 6.0e-08 62.4 100 35.0
Cfa025444 Carpinus fangiana HOM05D005979 ORTHO05D122864 3.9e-07 59.7 79 38.0
PRCOL_00006618 Prasinoderma coloniale HOM05D000738 ORTHO05D000675 3.9e-07 59.7 69 42.0
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 1.5e-06 57.8 65 43.1
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 5.6e-06 55.8 60 45.0
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 5.6e-06 55.8 81 39.5
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 7.3e-06 55.5 64 45.3
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 9.5e-06 55.1 81 39.5


User provided reference genes

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