Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p000892 Quercus lobata HOM05D006106 ORTHO05D007662 4.8e-169 597.8 314 100.0
QL07p000909 Quercus lobata HOM05D006106 ORTHO05D007662 6.0e-87 325.1 160 97.5
Manes.08G051400 Manihot esculenta HOM05D006106 ORTHO05D007662 4.2e-64 249.2 163 71.8
Haze_19847 Corylus avellana HOM05D006106 ORTHO05D007662 7.1e-64 248.4 160 75.0
Cfa016809 Carpinus fangiana HOM05D001739 ORTHO05D006605 9.3e-64 248.1 160 75.0
Duzib128G0400 Durio zibethinus HOM05D006106 ORTHO05D007662 2.1e-63 246.9 159 73.0
arahy.Tifrunner.gnm1.ann1.HSF0DX Arachis hypogaea HOM05D006106 ORTHO05D007662 4.6e-63 245.7 160 73.8
arahy.Tifrunner.gnm1.ann1.4I0CBR Arachis hypogaea HOM05D006106 ORTHO05D007662 1.3e-62 244.2 160 73.1
Lju124C42G9 Lonicera japonica HOM05D006106 ORTHO05D007662 4.3e-61 239.2 161 71.4
Dinv12500 Davidia involucrata HOM05D006106 ORTHO05D007662 5.6e-61 238.8 154 71.4
GSVIVG01033271001 Vitis vinifera HOM05D006106 ORTHO05D007662 7.3e-61 238.4 161 71.4
Actinidia39218 Actinidia chinensis HOM05D006106 ORTHO05D007662 9.6e-61 238.0 172 67.4
Sed0021985 Sechium edule HOM05D006106 ORTHO05D007662 1.3e-60 237.7 156 68.6
ClCG10G015760 Citrullus lanatus HOM05D006106 ORTHO05D007662 2.8e-60 236.5 163 66.9
PGR004G1513 Punica granatum HOM05D006106 ORTHO05D007662 1.1e-59 234.6 161 68.9
MELO3C009803.2 Cucumis melo HOM05D006106 ORTHO05D007662 1.8e-59 233.8 163 66.9
Gohir.D05G352101 Gossypium hirsutum HOM05D006106 ORTHO05D007662 2.4e-59 233.4 160 68.8
Gorai.009G383700 Gossypium raimondii HOM05D006106 ORTHO05D007662 2.4e-59 233.4 160 68.8
Nn7g36310 Nelumbo nucifera HOM05D006106 ORTHO05D007662 2.4e-59 233.4 157 70.7
Oeu008911.1 Olea europaea HOM05D006106 ORTHO05D007662 4.0e-59 232.6 163 70.6
Sc13g0001690 Simmondsia chinensis HOM05D006106 ORTHO05D007662 4.0e-59 232.6 148 71.6
CsaV3_3G040680 Cucumis sativus L. HOM05D006106 ORTHO05D007662 5.3e-59 232.3 163 66.3
Prupe.7G058400 Prunus persica HOM05D006106 ORTHO05D007662 6.9e-59 231.9 165 64.8
Gohir.A04G032500 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.5e-58 230.7 160 67.5
Hma1.2p1_1041F.1_g251050 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 2.6e-58 229.9 148 71.6
Hma1.2p1_1041F.1_g251060 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 2.6e-58 229.9 148 71.6
Potri.006G049900 Populus trichocarpa HOM05D006106 ORTHO05D007662 3.4e-58 229.6 165 67.3
MD12G1080100 Malus domestica HOM05D006106 ORTHO05D007662 4.4e-58 229.2 164 64.0
Atru.chr1.1113 Acer truncatum HOM05D006106 ORTHO05D007662 5.8e-58 228.8 163 66.3
Gorai.009G450600 Gossypium raimondii HOM05D006106 ORTHO05D007662 7.6e-58 228.4 157 66.9
Lj1g0017753 Lotus japonicus HOM05D006106 ORTHO05D007662 9.9e-58 228.0 162 68.5
TWI74G1340 Tripterygium wilfordii HOM05D006106 ORTHO05D007662 9.9e-58 228.0 148 70.9
Aqoxy1G00233 Aquilegia oxysepala HOM05D006106 ORTHO05D007662 1.7e-57 227.3 160 66.9
Rhsim03G0026900 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.7e-57 227.3 148 70.3
CSS0036472 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 2.2e-57 226.9 153 68.6
Sabra06G0034800 Salix brachista HOM05D006106 ORTHO05D007662 2.2e-57 226.9 164 67.1
EL10Ac3g07098 Beta vulgaris HOM05D006106 ORTHO05D007662 3.8e-57 226.1 159 64.8
RcHm_v2.0_Chr3g0482651 Rosa chinensis HOM05D006106 ORTHO05D007662 6.4e-57 225.3 164 63.4
CSS0045921 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 8.4e-57 224.9 153 68.0
TPR.G3692 Trifolium pratense HOM05D006106 ORTHO05D007662 1.1e-56 224.6 158 69.6
TAR623G1683 Trochodendron aralioides HOM05D006106 ORTHO05D007662 1.1e-56 224.6 157 68.8
Gohir.D05G383800 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.4e-56 224.2 157 66.2
Ca_15068_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 1.9e-56 223.8 161 68.3
Hund24702 Selenicereus undatus HOM05D006106 ORTHO05D007662 1.9e-56 223.8 163 62.6
AUR62024458 Chenopodium quinoa HOM05D006106 ORTHO05D007662 2.4e-56 223.4 148 67.6
Migut.J01752 Erythranthe guttata HOM05D006106 ORTHO05D007662 4.2e-56 222.6 147 69.4
Medtr7g091410 Medicago truncatula HOM05D006106 ORTHO05D007662 7.1e-56 221.9 157 68.8
Ah.04g151600 Amaranthus hybridus HOM05D006106 ORTHO05D007662 9.3e-56 221.5 148 66.2
AUR62026047 Chenopodium quinoa HOM05D006106 ORTHO05D007662 1.2e-55 221.1 148 66.9
Aa31LG1G23740 Aethionema arabicum HOM05D006106 ORTHO05D007662 1.6e-55 220.7 149 67.1
CDE08G0810 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 1.6e-55 220.7 157 65.0
Cc06_g17630 Coffea canephora HOM05D006106 ORTHO05D007662 1.6e-55 220.7 162 65.4
DCAR_009064 Daucus carota HOM05D006106 ORTHO05D007662 1.6e-55 220.7 161 64.6
VMungo1383G2820 Vigna mungo HOM05D006106 ORTHO05D007662 1.6e-55 220.7 160 66.9
Ciclev10004305m.g Citrus clementina HOM05D006106 ORTHO05D007662 2.1e-55 220.3 164 62.8
COL.COLO4_28304 Corchorus olitorius HOM05D006106 ORTHO05D007662 2.1e-55 220.3 151 66.9
AL4G40030 Arabidopsis lyrata HOM05D006106 ORTHO05D007662 2.7e-55 219.9 149 66.4
Sp4g23970 Schrenkiella parvula HOM05D006106 ORTHO05D007662 2.7e-55 219.9 149 66.4
FAN05G2558 Fragaria x ananassa HOM05D006106 ORTHO05D007662 4.6e-55 219.2 156 63.5
AT2G41720 Arabidopsis thaliana HOM05D006106 ORTHO05D007662 6.0e-55 218.8 149 66.4
SGA_v2.0_scaffold105G30404 Striga asiatica HOM05D001739 ORTHO05D006605 6.0e-55 218.8 160 63.8
Glyma.03G136200 Glycine max HOM05D006106 ORTHO05D007662 7.9e-55 218.4 164 65.9
Thhalv10016262m.g Eutrema salsugineum HOM05D006106 ORTHO05D007662 1.0e-54 218.0 149 67.1
CARHR136820 Cardamine hirsuta HOM05D006106 ORTHO05D007662 1.3e-54 217.6 149 67.1
Sopen04g007960 Solanum pennellii HOM05D006106 ORTHO05D007662 3.0e-54 216.5 155 65.2
FvH4_6g24060 Fragaria vesca HOM05D006106 ORTHO05D007662 3.9e-54 216.1 157 61.8
vmacro07842 Vaccinium macrocarpon HOM05D006106 ORTHO05D007662 3.9e-54 216.1 139 70.5
Phvul.001G131500 Phaseolus vulgaris HOM05D006106 ORTHO05D007662 6.6e-54 215.3 160 65.6
Lsat_1_v5_gn_9_30580 Lactuca sativa HOM05D006106 ORTHO05D007662 1.1e-53 214.5 163 61.3
Glyma.19G138101 Glycine max HOM05D006106 ORTHO05D007662 2.5e-53 213.4 163 65.6
Nitab4.5_0000586g0120 Nicotiana tabacum HOM05D006106 ORTHO05D007662 4.3e-53 212.6 158 64.6
Psat3g074120 Pisum sativum HOM05D006106 ORTHO05D007662 9.6e-53 211.5 160 65.6
Lalb_Chr01g0017341 Lupinus albus HOM05D006106 ORTHO05D007662 1.6e-52 210.7 160 63.8
PSO384G4415 Papaver somniferum HOM05D006106 ORTHO05D007662 1.6e-52 210.7 156 66.0
PSO339G0809 Papaver somniferum HOM05D006106 ORTHO05D007662 2.1e-52 210.3 144 70.1
CAN.G676.31 Capsicum annuum HOM05D006106 ORTHO05D007662 8.1e-52 208.4 154 61.7
C04p02890 Brassica napus HOM05D006106 ORTHO05D007662 1.1e-51 208.0 155 60.6
BolC4t21929H Brassica oleracea HOM05D006106 ORTHO05D007662 1.1e-51 208.0 155 60.6
A05p02440 Brassica napus HOM05D006106 ORTHO05D007662 1.4e-51 207.6 155 59.4
BraA05t19238Z Brassica rapa HOM05D006106 ORTHO05D007662 1.4e-51 207.6 155 59.4
HanXRQChr10g0296661 Helianthus annuus HOM05D006106 ORTHO05D007662 4.5e-50 202.6 163 58.3
Cpa.g.sc224.2 Carica papaya HOM05D006106 ORTHO05D007662 4.6e-47 192.6 166 59.0
ATR0188G017 Amborella trichopoda HOM05D006106 ORTHO05D007662 3.9e-46 189.5 136 63.2
HPP92_011301 Vanilla planifolia HOM05D006106 ORTHO05D007662 6.7e-46 188.7 149 59.7
HPP92_011279 Vanilla planifolia HOM05D006106 ORTHO05D007662 1.9e-45 187.2 149 59.1
Zm00001eb325040 Zea mays HOM05D006106 ORTHO05D007662 5.6e-45 185.7 145 61.4
Nitab4.5_0009615g0030 Nicotiana tabacum HOM05D006106 ORTHO05D007662 1.6e-44 184.1 157 58.0
ECA247G0166 Erigeron canadensis HOM05D001739 ORTHO05D006605 2.8e-44 183.3 142 57.7
Eucgr.A02342 Eucalyptus grandis HOM05D006106 ORTHO05D007662 8.1e-44 181.8 111 72.1
MBI17_g23175_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 3.1e-35 153.3 336 31.5
Peaxi162Scf00130g00324 Petunia axillaris HOM05D006106 ORTHO05D007662 6.9e-35 152.1 158 52.5
Carub.0004s2400 Capsella rubella HOM05D006106 ORTHO05D007662 2.3e-30 137.1 88 68.2
Pp3c2_1940 Physcomitrium patens HOM05D006106 ORTHO05D007662 3.3e-29 133.3 114 56.1
Mapoly0043s0117 Marchantia polymorpha HOM05D006106 ORTHO05D007662 8.2e-28 128.6 120 51.7
AagrBONN_evm.TU.Sc2ySwM_344.4225 Anthoceros agrestis HOM05D006106 ORTHO05D007662 1.8e-27 127.5 139 46.0
Rhsim03G0025700 Rhododendron simsii HOM05D006106 ORTHO05D007662 3.1e-27 126.7 115 53.9
Actinidia09323 Actinidia chinensis HOM05D001739 ORTHO05D006605 2.0e-26 124.0 95 60.0
Rhsim03G0026800 Rhododendron simsii HOM05D006106 ORTHO05D007662 2.9e-25 120.2 96 56.2
FAN14G5662 Fragaria x ananassa HOM05D006106 ORTHO05D007662 1.1e-24 118.2 94 56.4
unitig_578.g15981 Utricularia gibba HOM05D006106 ORTHO05D007662 2.7e-23 113.6 105 54.3
CiPaw.10G033900 Carya illinoinensis HOM05D006106 ORTHO05D007662 1.5e-21 107.8 59 81.4
Rhsim03G0025500 Rhododendron simsii HOM05D006106 ORTHO05D007662 3.3e-21 106.7 76 60.5
CBR_g50368 Chara braunii HOM05D006106 ORTHO05D007662 2.8e-20 103.6 113 42.5
Rhsim03G0026000 Rhododendron simsii HOM05D001739 ORTHO05D007662 1.4e-19 101.3 76 59.2
Gorai.003G091300 Gossypium raimondii HOM05D006106 ORTHO05D007662 4.1e-19 99.8 59 74.6
BcaNung06815 Brassica carinata HOM05D006106 ORTHO05D007662 6.9e-19 99.0 60 73.3
BcaNung06942 Brassica carinata HOM05D006106 ORTHO05D007662 1.7e-17 94.4 86 47.7
Thecc.05G152200 Theobroma cacao HOM05D006106 ORTHO05D007662 1.0e-14 85.1 40 92.5
Os07g0213300 Oryza sativa ssp. japonica HOM05D006106 ORTHO05D007662 4.8e-12 76.3 40 82.5
THA.LOC104804858 Tarenaya hassleriana HOM05D006106 ORTHO05D007662 8.2e-12 75.5 41 82.9
CBR_g63077 Chara braunii HOM05D006217 ORTHO05D008480 6.1e-07 59.3 92 29.3
Dinv01391 Davidia involucrata HOM05D002479 ORTHO05D002675 6.1e-07 59.3 89 34.8
TAR626G0455 Trochodendron aralioides HOM05D002479 ORTHO05D002675 1.0e-06 58.5 83 34.9
Mapoly0003s0152 Marchantia polymorpha HOM05D006217 ORTHO05D008480 1.4e-06 58.2 112 28.6
Peaxi162Scf00007g00285 Petunia axillaris HOM05D002479 ORTHO05D002675 1.4e-06 58.2 88 33.0
Nn2g14806 Nelumbo nucifera HOM05D002479 ORTHO05D002675 1.8e-06 57.8 83 36.1
Nitab4.5_0027477g0010 Nicotiana tabacum HOM05D002479 ORTHO05D002675 1.8e-06 57.8 88 34.1
Solyc07g054480.3 Solanum lycopersicum HOM05D002479 ORTHO05D002675 1.8e-06 57.8 83 33.7
Sopen07g028420 Solanum pennellii HOM05D002479 ORTHO05D002675 1.8e-06 57.8 83 33.7
Ciclev10018817m.g Citrus clementina HOM05D006217 ORTHO05D008480 2.3e-06 57.4 108 27.8
Psat4g055880 Pisum sativum HOM05D006217 ORTHO05D008480 2.3e-06 57.4 108 29.6
Cc05_g06520 Coffea canephora HOM05D002479 ORTHO05D002675 3.0e-06 57.0 89 33.7
Atru.BG.200.p Acer truncatum HOM05D006217 ORTHO05D008480 4.0e-06 56.6 103 28.2
Nitab4.5_0009520g0020 Nicotiana tabacum HOM05D002479 ORTHO05D002675 4.0e-06 56.6 88 33.0
PGSC0003DMG400018365 Solanum tuberosum HOM05D002479 ORTHO05D002675 4.0e-06 56.6 83 33.7
Ah.01g005230 Amaranthus hybridus HOM05D002479 ORTHO05D002675 5.2e-06 56.2 89 33.7
Eucgr.K02896 Eucalyptus grandis HOM05D006217 ORTHO05D008480 6.7e-06 55.8 103 27.2
PGR044G0185 Punica granatum HOM05D006217 ORTHO05D008480 6.7e-06 55.8 108 26.9
TWI15G0191 Tripterygium wilfordii HOM05D006217 ORTHO05D008480 6.7e-06 55.8 108 26.9
Lalb_Chr12g0201281 Lupinus albus HOM05D006217 ORTHO05D008480 8.8e-06 55.5 108 26.9


User provided reference genes

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