Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p052538 Quercus lobata HOM05D007700 ORTHO05D009669 3.6e-136 489.2 268 100.0
CiPaw.07G004600 Carya illinoinensis HOM05D007700 ORTHO05D009669 5.4e-84 315.8 269 64.7
CANSAT25G3310 Cannabis sativa HOM05D007700 ORTHO05D009669 2.8e-80 303.5 268 60.4
Thecc.01G008500 Theobroma cacao HOM05D007700 ORTHO05D009669 3.6e-80 303.1 270 59.6
Cfa007052 Carpinus fangiana HOM05D007700 ORTHO05D009669 4.7e-80 302.8 272 60.7
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 4.7e-80 302.8 271 61.3
Eucgr.I02272 Eucalyptus grandis HOM05D007700 ORTHO05D009669 4.0e-79 299.7 274 56.2
Lj2P490T20 Lonicera japonica HOM05D007700 ORTHO05D009669 4.0e-79 299.7 271 59.4
Sabra05G0085500 Salix brachista HOM05D007700 ORTHO05D009669 2.9e-77 293.5 268 57.5
Lj3g0022870 Lotus japonicus HOM05D007700 ORTHO05D009669 3.2e-76 290.0 273 56.4
Potri.005G103300 Populus trichocarpa HOM05D007700 ORTHO05D009669 1.0e-74 285.0 269 56.9
Actinidia22918 Actinidia chinensis HOM05D007700 ORTHO05D009669 1.3e-74 284.6 268 56.0
Nn6g31772 Nelumbo nucifera HOM05D007700 ORTHO05D009669 3.0e-74 283.5 277 54.9
PGSC0003DMG400040241 Solanum tuberosum HOM05D007700 ORTHO05D009669 3.0e-74 283.5 272 59.2
arahy.Tifrunner.gnm1.ann1.PXC5PH Arachis hypogaea HOM05D007700 ORTHO05D009669 1.1e-73 281.6 276 55.8
ClCG01G020760 Citrullus lanatus HOM05D007700 ORTHO05D009669 1.5e-73 281.2 276 57.6
Sopen02g027760 Solanum pennellii HOM05D007700 ORTHO05D009669 1.5e-73 281.2 272 58.8
Aa31LG8G14930 Aethionema arabicum HOM05D007700 ORTHO05D009669 4.3e-73 279.6 271 52.8
Thhalv10022683m.g Eutrema salsugineum HOM05D007700 ORTHO05D009669 5.6e-73 279.3 268 52.6
Gohir.D03G003800 Gossypium hirsutum HOM05D007700 ORTHO05D009669 5.6e-73 279.3 264 56.8
Atru.chr3.942 Acer truncatum HOM05D007700 ORTHO05D009669 7.3e-73 278.9 276 59.4
AL3G50640 Arabidopsis lyrata HOM05D007700 ORTHO05D009669 6.2e-72 275.8 271 53.5
arahy.Tifrunner.gnm1.ann1.HE2L98 Arachis hypogaea HOM05D007700 ORTHO05D009669 8.1e-72 275.4 273 55.7
Gorai.003G004000 Gossypium raimondii HOM05D007700 ORTHO05D009669 1.8e-71 274.2 268 55.2
AT2G17670 Arabidopsis thaliana HOM05D007700 ORTHO05D009669 3.1e-71 273.5 272 52.6
Dinv40165 Davidia involucrata HOM05D007700 ORTHO05D009669 4.0e-71 273.1 278 55.0
vmacro20514 Vaccinium macrocarpon HOM05D007700 ORTHO05D009669 3.4e-70 270.0 203 65.0
MELO3C007960.2 Cucumis melo HOM05D007700 ORTHO05D009669 9.9e-70 268.5 273 56.0
Rhsim10G0201800 Rhododendron simsii HOM05D000242 ORTHO05D009669 1.3e-69 268.1 213 60.6
Rhsim10G0203000 Rhododendron simsii HOM05D000242 ORTHO05D009669 8.4e-69 265.4 203 62.1
Psat4g208920 Pisum sativum HOM05D007700 ORTHO05D009669 1.1e-68 265.0 272 52.6
Cc00_g14260 Coffea canephora HOM05D007700 ORTHO05D009669 1.4e-68 264.6 273 52.7
Glyma.07G109000 Glycine max HOM05D007700 ORTHO05D009669 1.4e-68 264.6 274 55.5
Manes.01G153300 Manihot esculenta HOM05D007700 ORTHO05D009669 1.4e-68 264.6 271 55.7
VMungo0331G0753 Vigna mungo HOM05D007700 ORTHO05D009669 1.2e-67 261.5 275 54.2
Sp3g31020 Schrenkiella parvula HOM05D007700 ORTHO05D009669 2.1e-67 260.8 268 51.9
TPR.G28737 Trifolium pratense HOM05D007700 ORTHO05D009669 4.6e-67 259.6 268 51.9
Ca_23118_v3 Cicer arietinum L. HOM05D007700 ORTHO05D009669 1.0e-66 258.5 268 50.7
BolC9t54240H Brassica oleracea HOM05D007700 ORTHO05D009669 1.3e-66 258.1 270 51.5
BraA09t36788Z Brassica rapa HOM05D007700 ORTHO05D009669 1.7e-66 257.7 269 50.9
C09p13500 Brassica napus HOM05D007700 ORTHO05D009669 3.9e-66 256.5 270 50.7
TAR625G0909 Trochodendron aralioides HOM05D007700 ORTHO05D009669 6.6e-66 255.8 276 52.9
Medtr8g005870 Medicago truncatula HOM05D007700 ORTHO05D009669 2.5e-65 253.8 274 50.0
A09p11480 Brassica napus HOM05D007700 ORTHO05D009669 1.3e-64 251.5 271 50.2
THA.LOC104804288 Tarenaya hassleriana HOM05D007700 ORTHO05D009669 1.3e-64 251.5 270 50.0
Solyc02g082970.1 Solanum lycopersicum HOM05D007700 ORTHO05D009669 2.1e-64 250.8 271 56.1
BcaB07g31715 Brassica carinata HOM05D007700 ORTHO05D009669 1.8e-63 247.7 276 48.6
Prupe.7G178400 Prunus persica HOM05D007700 ORTHO05D009669 6.9e-63 245.7 267 52.1
PGR119G0746 Punica granatum HOM05D007700 ORTHO05D009669 1.5e-62 244.6 268 48.5
Ciclev10025555m.g Citrus clementina HOM05D007700 ORTHO05D009669 2.4e-60 237.3 270 48.1
DCAR_023138 Daucus carota HOM05D007700 ORTHO05D009669 4.2e-60 236.5 205 59.5
Sed0015131 Sechium edule HOM05D000242 ORTHO05D009669 2.1e-59 234.2 237 54.4
CsaV3_6G047710 Cucumis sativus L. HOM05D007700 ORTHO05D009669 6.0e-59 232.6 276 48.9
Dinv08534 Davidia involucrata HOM05D007700 ORTHO05D009669 5.1e-58 229.6 152 71.7
HanXRQChr07g0192051 Helianthus annuus HOM05D007700 ORTHO05D009669 2.4e-55 220.7 276 48.2
MD02G1120600 Malus domestica HOM05D007700 ORTHO05D009669 5.3e-55 219.5 270 47.8
Phvul.010G056500 Phaseolus vulgaris HOM05D007700 ORTHO05D009669 1.7e-53 214.5 276 47.1
Carub.0003s3177 Capsella rubella HOM05D007700 ORTHO05D009669 4.9e-53 213.0 238 46.6
MBI05_g43154_MAGBIO Magnolia biondii HOM05D007700 ORTHO05D009669 2.5e-52 210.7 268 45.1
Migut.C00922 Erythranthe guttata HOM05D007700 ORTHO05D009669 6.0e-51 206.1 244 52.5
CARHR107900 Cardamine hirsuta HOM05D007700 ORTHO05D009669 3.9e-50 203.4 234 49.6
COL.COLO4_22522 Corchorus olitorius HOM05D007700 ORTHO05D009669 1.3e-48 198.4 270 44.4
Lsat_1_v5_gn_2_74520 Lactuca sativa HOM05D007700 ORTHO05D009669 2.8e-48 197.2 280 42.9
Peaxi162Scf01310g10029 Petunia axillaris HOM05D007700 ORTHO05D009669 4.8e-48 196.4 269 45.0
FvH4_1g10671 Fragaria vesca HOM05D007700 ORTHO05D009669 1.1e-47 195.3 198 53.0
SalBow7G3569 Salvia bowleyana HOM05D007700 ORTHO05D009669 5.3e-47 193.0 235 45.1
FAN23G0395 Fragaria x ananassa HOM05D007700 ORTHO05D009669 6.9e-47 192.6 198 52.5
SGA_v2.0_scaffold275G46573 Striga asiatica HOM05D007700 ORTHO05D009669 2.0e-46 191.0 234 50.4
Gohir.A02G176100 Gossypium hirsutum HOM05D007700 ORTHO05D009669 6.5e-45 186.0 146 62.3
Lalb_Chr03g0039951 Lupinus albus HOM05D007700 ORTHO05D009669 2.5e-44 184.1 199 53.3
Nitab4.5_0003207g0040 Nicotiana tabacum HOM05D007700 ORTHO05D009669 4.2e-44 183.3 151 59.6
Nitab4.5_0001581g0090 Nicotiana tabacum HOM05D007700 ORTHO05D009669 7.1e-44 182.6 151 58.9
TWI73G0108 Tripterygium wilfordii HOM05D007700 ORTHO05D009669 4.6e-43 179.9 202 51.5
CAN.G890.59 Capsicum annuum HOM05D007700 ORTHO05D009669 1.8e-42 177.9 151 58.3
CDE05G1147 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 8.7e-42 175.6 271 38.7
HPP92_025432 Vanilla planifolia HOM05D007700 ORTHO05D009669 5.3e-39 166.4 280 38.9
AUR62041102 Chenopodium quinoa HOM05D007700 ORTHO05D009669 1.0e-37 162.2 203 48.8
AUR62026170 Chenopodium quinoa HOM05D007700 ORTHO05D009669 8.5e-37 159.1 203 48.3
MSTRG.1126 Avicennia marina HOM05D007700 ORTHO05D009669 4.2e-36 156.8 226 41.2
EL10Ac6g13369 Beta vulgaris HOM05D007700 ORTHO05D009669 2.3e-34 151.0 214 44.9
Sc03g0003890 Simmondsia chinensis HOM05D007700 ORTHO05D009669 1.5e-33 148.3 200 44.0
Aqoxy6G01792 Aquilegia oxysepala HOM05D007700 ORTHO05D009669 5.7e-33 146.4 213 44.1
Ah.03g134060 Amaranthus hybridus HOM05D007700 ORTHO05D009669 2.0e-30 137.9 201 40.8
Glyma.03G117900 Glycine max HOM05D007700 ORTHO05D009669 3.4e-30 137.1 272 39.3
BcaC04g22956 Brassica carinata HOM05D007700 ORTHO05D009669 1.9e-28 131.3 112 55.4
Actinidia17391 Actinidia chinensis HOM05D000192 ORTHO05D000123 2.1e-27 127.9 103 63.1
SHI08474 Sapria himalayana HOM05D007700 ORTHO05D009669 3.9e-26 123.6 105 55.2
ATR0661G421 Amborella trichopoda HOM05D007700 ORTHO05D009669 3.1e-23 114.0 123 50.4
ATR0739G057 Amborella trichopoda HOM05D007700 ORTHO05D009669 1.3e-16 92.0 171 32.7
CDE05G1645 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 3.7e-16 90.5 73 56.2
ATR0580G328 Amborella trichopoda HOM05D000424 ORTHO05D000355 2.0e-09 68.2 148 29.7
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 2.0e-09 68.2 199 24.1
Rhsim02G0073500 Rhododendron simsii HOM05D007128 ORTHO05D009059 2.0e-09 68.2 143 32.2
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 1.3e-08 65.5 183 23.5
A04p13440 Brassica napus HOM05D007358 ORTHO05D009117 2.2e-08 64.7 202 22.8
Ciclev10011148m.g Citrus clementina HOM05D000855 ORTHO05D008530 2.8e-08 64.3 218 24.3
MBI12_g09300_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D008530 3.7e-08 63.9 125 32.8
GSVIVG01025536001 Vitis vinifera HOM05D000855 ORTHO05D008530 4.8e-08 63.5 180 28.9
Rhsim02G0072100 Rhododendron simsii HOM05D007128 ORTHO05D009059 6.3e-08 63.2 139 30.9
Cc07_g19040 Coffea canephora HOM05D000162 ORTHO05D000090 8.3e-08 62.8 202 22.3
Lj5g0021887 Lotus japonicus HOM05D000855 ORTHO05D008530 8.3e-08 62.8 213 24.4
Hma1.2p1_0969F.1_g242592 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 1.1e-07 62.4 147 24.5
BraA04t17002Z Brassica rapa HOM05D007358 ORTHO05D009117 1.4e-07 62.0 202 22.8
CARHR261620 Cardamine hirsuta HOM05D007358 ORTHO05D009117 1.4e-07 62.0 199 24.6
Peaxi162Scf00020g00155 Petunia axillaris HOM05D003900 ORTHO05D005009 1.8e-07 61.6 203 27.6
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 2.4e-07 61.2 168 28.0
HanXRQChr17g0567001 Helianthus annuus HOM05D000424 ORTHO05D000355 2.4e-07 61.2 121 31.4
Sabra16G0092100 Salix brachista HOM05D000855 ORTHO05D008530 3.1e-07 60.8 218 23.9
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 4.1e-07 60.5 166 25.9
CAN.G756.7 Capsicum annuum HOM05D007320 ORTHO05D009290 5.4e-07 60.1 215 23.7
Dinv22679 Davidia involucrata HOM05D007128 ORTHO05D009059 5.4e-07 60.1 129 31.8
PSO266G0010 Papaver somniferum HOM05D003900 ORTHO05D005009 5.4e-07 60.1 232 22.0
Potri.016G085300 Populus trichocarpa HOM05D000855 ORTHO05D008530 5.4e-07 60.1 238 25.2
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 7.0e-07 59.7 110 30.9
Oeu015216.1 Olea europaea HOM05D003900 ORTHO05D005009 7.0e-07 59.7 177 22.6
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 7.0e-07 59.7 178 25.8
Cc02_g33170 Coffea canephora HOM05D007570 ORTHO05D009365 9.1e-07 59.3 208 24.0
DCAR_003849 Daucus carota HOM05D000855 ORTHO05D008530 9.1e-07 59.3 246 24.4
Lsat_1_v5_gn_9_88941 Lactuca sativa HOM05D003039 ORTHO05D008410 9.1e-07 59.3 167 26.9
Medtr1g039290 Medicago truncatula HOM05D010072 ORTHO05D011797 9.1e-07 59.3 189 30.7
TPR.G5736 Trifolium pratense HOM05D007320 ORTHO05D009290 9.1e-07 59.3 214 22.9
Aa31LG10G15460 Aethionema arabicum HOM05D003900 ORTHO05D005009 1.2e-06 58.9 149 24.2
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 1.2e-06 58.9 178 25.3
Ca_14754_v3 Cicer arietinum L. HOM05D006569 ORTHO05D007515 1.2e-06 58.9 119 26.9
Nn2g12986 Nelumbo nucifera HOM05D000855 ORTHO05D008530 1.2e-06 58.9 124 29.0
Solyc04g076370.4 Solanum lycopersicum HOM05D007402 ORTHO05D003673 1.2e-06 58.9 104 29.8
Sopen04g030130 Solanum pennellii HOM05D007402 ORTHO05D003673 1.2e-06 58.9 104 29.8
PGSC0003DMG400009341 Solanum tuberosum HOM05D007402 ORTHO05D003673 1.2e-06 58.9 104 29.8
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 1.6e-06 58.5 111 31.5
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 1.6e-06 58.5 108 27.8
Manes.08G003100 Manihot esculenta HOM05D000855 ORTHO05D008530 1.6e-06 58.5 179 27.4
PSO339G3775 Papaver somniferum HOM05D000855 ORTHO05D008530 1.6e-06 58.5 156 26.9
Peaxi162Scf00454g00034 Petunia axillaris HOM05D007402 ORTHO05D003673 1.6e-06 58.5 101 30.7
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 1.6e-06 58.5 233 24.0
Solyc01g088490.3 Solanum lycopersicum HOM05D007320 ORTHO05D009290 1.6e-06 58.5 192 24.5
TPR.G14625 Trifolium pratense HOM05D004783 ORTHO05D005581 1.6e-06 58.5 121 30.6
Aqoxy4G03187 Aquilegia oxysepala HOM05D000855 ORTHO05D008530 2.0e-06 58.2 239 21.3
Aqoxy5G04021 Aquilegia oxysepala HOM05D000162 ORTHO05D000090 2.0e-06 58.2 212 26.4
DCAR_009287 Daucus carota HOM05D000855 ORTHO05D008530 2.0e-06 58.2 246 24.4
Lalb_Chr02g0153641 Lupinus albus HOM05D000855 ORTHO05D008530 2.0e-06 58.2 213 21.6
PSO017G6569 Papaver somniferum HOM05D007486 ORTHO05D003673 2.0e-06 58.2 114 29.8
Psat6g065880 Pisum sativum HOM05D006895 ORTHO05D008605 2.0e-06 58.2 232 28.0
Sopen01g035350 Solanum pennellii HOM05D007320 ORTHO05D009290 2.0e-06 58.2 192 25.0
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 2.0e-06 58.2 248 26.2
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 2.0e-06 58.2 145 26.2
BraA10t45038Z Brassica rapa HOM05D006596 ORTHO05D008497 2.7e-06 57.8 207 26.1
Cpa.g.sc13.131 Carica papaya HOM05D007402 ORTHO05D003673 2.7e-06 57.8 103 31.1
AUR62043158 Chenopodium quinoa HOM05D007145 ORTHO05D008952 2.7e-06 57.8 126 34.9
ClCG11G011810 Citrullus lanatus HOM05D006842 ORTHO05D008908 2.7e-06 57.8 232 24.1
Migut.J00415 Erythranthe guttata HOM05D000855 ORTHO05D008530 2.7e-06 57.8 104 28.8
BcaB08g37396 Brassica carinata HOM05D004824 ORTHO05D017526 3.5e-06 57.4 239 24.7
C09p70390 Brassica napus HOM05D006596 ORTHO05D008497 3.5e-06 57.4 217 25.8
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 3.5e-06 57.4 174 26.4
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 3.5e-06 57.4 187 25.1
Sp6g36450 Schrenkiella parvula HOM05D006596 ORTHO05D008497 3.5e-06 57.4 208 25.5
Atru.chr3.1624 Acer truncatum HOM05D007128 ORTHO05D009059 4.5e-06 57.0 120 31.7
ATR0564G068 Amborella trichopoda HOM05D000424 ORTHO05D009254 4.5e-06 57.0 148 24.3
EL10Ac6g14755 Beta vulgaris HOM05D000249 ORTHO05D000206 4.5e-06 57.0 119 28.6
PSO384G0446 Papaver somniferum HOM05D003900 ORTHO05D005009 4.5e-06 57.0 227 20.7
SMO339G0004 Selaginella moellendorffii HOM05D003689 ORTHO05D008530 4.5e-06 57.0 104 34.6
TWI38G2031 Tripterygium wilfordii HOM05D007128 ORTHO05D009059 4.5e-06 57.0 143 28.7
AT3G09650 Arabidopsis thaliana HOM05D000855 ORTHO05D008530 5.9e-06 56.6 82 30.5
BraA07t30195Z Brassica rapa HOM05D003900 ORTHO05D005009 5.9e-06 56.6 148 25.7
CSS0037549 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 5.9e-06 56.6 154 28.6
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 5.9e-06 56.6 82 30.5
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 5.9e-06 56.6 178 24.7
COL.COLO4_30370 Corchorus olitorius HOM05D000062 ORTHO05D001642 5.9e-06 56.6 133 32.3
PSO210G6432 Papaver somniferum HOM05D007155 ORTHO05D003034 5.9e-06 56.6 92 38.0
Prupe.6G241600 Prunus persica HOM05D000855 ORTHO05D008530 5.9e-06 56.6 185 27.0
A03p00400 Brassica napus HOM05D007455 ORTHO05D009431 7.7e-06 56.2 155 23.2
Thhalv10001849m.g Eutrema salsugineum HOM05D007660 ORTHO05D009442 7.7e-06 56.2 115 27.8
FvH4_6g15290 Fragaria vesca HOM05D000855 ORTHO05D008530 7.7e-06 56.2 179 26.3
SMO169G0048 Selaginella moellendorffii HOM05D007251 ORTHO05D037542 7.7e-06 56.2 125 30.4
VMungo1127G1215 Vigna mungo HOM05D007402 ORTHO05D003673 7.7e-06 56.2 102 27.5


User provided reference genes

Program Settings