Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 3.9e-237 824.7 511 100.0
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 1.4e-194 683.3 510 83.7
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 4.0e-165 585.5 511 73.0
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 4.9e-163 578.6 511 74.2
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 1.8e-162 576.6 511 72.8
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 7.8e-161 571.2 516 73.6
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 3.9e-160 568.9 527 69.6
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 9.5e-159 564.3 512 73.4
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 4.7e-158 562.0 514 70.8
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 1.4e-157 560.5 510 72.2
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 4.0e-157 558.9 514 71.2
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 4.0e-157 558.9 511 72.4
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 1.2e-156 557.4 396 80.1
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 9.8e-156 554.3 517 69.8
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 9.8e-156 554.3 435 74.0
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 2.9e-155 552.7 511 71.4
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 3.7e-155 552.4 510 72.5
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 1.4e-154 550.4 433 71.8
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 5.4e-154 548.5 482 66.4
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 6.0e-153 545.0 434 75.3
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 1.7e-152 543.5 446 70.0
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 6.6e-152 541.6 530 71.5
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 2.1e-150 536.6 435 72.2
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 6.2e-150 535.0 527 71.2
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 4.0e-149 532.3 510 63.7
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 2.0e-148 530.0 426 72.1
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 9.8e-148 527.7 525 65.7
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 1.7e-147 526.9 516 69.4
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 2.9e-147 526.2 510 70.0
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 2.4e-146 523.1 499 70.3
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 1.3e-144 517.3 513 67.3
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 1.7e-144 516.9 437 69.3
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 3.9e-144 515.8 435 68.3
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 5.1e-144 515.4 410 82.9
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 7.3e-143 511.5 421 73.4
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 1.6e-142 510.4 527 70.8
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.4e-141 507.3 439 67.7
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 3.1e-141 506.1 443 66.8
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 3.1e-141 506.1 466 73.0
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 8.9e-141 504.6 433 69.5
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 2.0e-140 503.4 443 66.6
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 2.6e-140 503.1 524 70.6
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 2.6e-140 503.1 443 66.4
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 1.3e-139 500.7 516 70.0
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 3.8e-139 499.2 512 69.9
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 3.8e-139 499.2 511 68.3
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 1.4e-138 497.3 424 68.4
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 4.1e-138 495.7 436 67.7
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 5.4e-138 495.4 436 67.4
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 3.9e-136 489.2 437 66.8
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 1.9e-135 486.9 421 67.5
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 4.3e-135 485.7 432 66.0
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 6.2e-134 481.9 523 65.6
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 6.2e-134 481.9 512 65.2
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 8.1e-134 481.5 433 67.7
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 5.2e-133 478.8 433 65.6
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 6.9e-133 478.4 501 69.3
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 2.0e-132 476.9 407 66.6
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 1.4e-130 470.7 466 60.7
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 2.4e-130 469.9 433 65.4
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 3.0e-128 463.0 534 59.2
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 1.5e-127 460.7 405 67.7
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 3.6e-126 456.1 534 63.9
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 6.2e-126 455.3 520 64.2
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.1e-125 454.5 508 61.4
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 1.5e-124 450.7 405 67.4
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 7.6e-124 448.4 388 68.3
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 3.8e-123 446.0 358 75.4
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 1.1e-122 444.5 411 65.2
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 4.2e-122 442.6 492 61.6
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 9.3e-122 441.4 464 60.6
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 1.6e-121 440.7 515 62.7
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 6.7e-120 435.3 512 58.2
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 2.5e-119 433.3 438 59.1
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 2.5e-119 433.3 515 61.4
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 1.3e-118 431.0 517 60.0
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 1.3e-118 431.0 538 57.4
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 5.3e-117 425.6 439 62.4
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 1.2e-116 424.5 439 62.9
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 1.2e-116 424.5 677 46.2
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 3.4e-116 422.9 541 55.1
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 3.4e-116 422.9 535 55.5
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 7.6e-116 421.8 384 67.7
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 8.4e-115 418.3 332 69.0
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 9.3e-114 414.8 443 60.3
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 3.5e-113 412.9 389 63.8
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.0e-112 411.4 394 64.5
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.0e-112 411.4 389 63.2
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 3.9e-112 409.5 391 63.4
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 6.7e-112 408.7 369 68.8
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 2.0e-108 397.1 534 56.6
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 1.3e-107 394.4 527 57.5
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 1.7e-107 394.0 526 53.4
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 1.7e-107 394.0 290 70.7
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 8.4e-107 391.7 362 68.8
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 3.2e-106 389.8 405 58.8
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 9.3e-106 388.3 274 75.2
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 9.3e-106 388.3 413 56.2
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 6.7e-104 382.1 442 55.9
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 1.1e-103 381.3 448 56.2
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 5.7e-103 379.0 531 58.4
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 5.3e-101 372.5 521 50.9
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 1.2e-100 371.3 529 56.7
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.2e-100 371.3 373 61.4
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 1.7e-99 367.5 316 75.6
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 3.8e-99 366.3 448 53.3
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 3.8e-99 366.3 448 53.3
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 2.5e-98 363.6 401 52.4
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 1.0e-96 358.2 251 75.7
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 7.4e-87 325.5 522 48.1
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 1.7e-86 324.3 436 49.1
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 2.7e-81 307.0 342 52.9
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 1.0e-80 305.1 435 46.0
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 4.7e-73 279.6 410 50.7
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 4.0e-72 276.6 443 44.7
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.9e-66 257.7 229 59.8
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 3.4e-63 246.9 205 59.0
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 1.3e-59 235.0 432 42.4
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 3.6e-57 226.9 342 47.1
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 2.2e-54 217.6 463 40.4
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 4.9e-54 216.5 196 70.9
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 2.9e-51 207.2 368 42.4
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 7.5e-47 192.6 210 58.6
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 8.0e-41 172.6 348 37.6
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 4.9e-30 136.7 270 43.7
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 5.4e-29 133.3 273 41.4
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 2.1e-28 131.3 273 41.0
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 1.4e-24 118.6 74 79.7
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 8.1e-17 92.8 256 27.7
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 5.2e-16 90.1 84 57.1
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 5.4e-13 80.1 97 52.6
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 5.4e-13 80.1 97 52.6
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 2.1e-12 78.2 49 73.5
PRCOL_00002206 Prasinoderma coloniale HOM05D005480 ORTHO05D006735 1.7e-11 75.1 329 25.2
GSVIVG01006101001 Vitis vinifera HOM05D005480 ORTHO05D006735 7.3e-10 69.7 79 63.3
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 2.1e-09 68.2 111 45.0
BolC4t24894H Brassica oleracea HOM05D005480 ORTHO05D006735 2.4e-08 64.7 98 48.0
Lalb_Chr05g0213591 Lupinus albus HOM05D005480 ORTHO05D006735 2.2e-06 58.2 36 77.8


User provided reference genes

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