Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p038470 Quercus lobata HOM05D002268 ORTHO05D006626 4.2e-52 208.4 162 100.0
QL11p018105 Quercus lobata HOM05D002268 ORTHO05D006626 2.9e-21 105.9 67 79.1
Cfa009764 Carpinus fangiana HOM05D002268 ORTHO05D006626 9.4e-20 100.9 67 77.6
Haze_23129 Corylus avellana HOM05D002268 ORTHO05D006626 9.4e-20 100.9 67 77.6
Dinv22183 Davidia involucrata HOM05D002268 ORTHO05D006626 9.4e-20 100.9 70 72.9
TAR623G0947 Trochodendron aralioides HOM05D002268 ORTHO05D006626 9.4e-20 100.9 67 76.1
Oeu063320.1 Olea europaea HOM05D002268 ORTHO05D006626 2.1e-19 99.8 62 77.4
Sed0009485 Sechium edule HOM05D002268 ORTHO05D006626 3.6e-19 99.0 67 74.6
Lalb_Chr03g0026321 Lupinus albus HOM05D002268 ORTHO05D006626 8.0e-19 97.8 67 73.1
Medtr4g065030 Medicago truncatula HOM05D002268 ORTHO05D006626 8.0e-19 97.8 68 73.5
Nitab4.5_0005819g0060 Nicotiana tabacum HOM05D002268 ORTHO05D006626 8.0e-19 97.8 67 73.1
Nitab4.5_0006994g0050 Nicotiana tabacum HOM05D002268 ORTHO05D006626 8.0e-19 97.8 67 73.1
VMungo1127G0743 Vigna mungo HOM05D002268 ORTHO05D006937 8.0e-19 97.8 59 81.4
arahy.Tifrunner.gnm1.ann1.DNZ7SI Arachis hypogaea HOM05D002268 ORTHO05D006626 1.0e-18 97.4 68 72.1
MELO3C014599.2 Cucumis melo HOM05D002268 ORTHO05D006626 1.0e-18 97.4 55 85.5
CsaV3_4G024210 Cucumis sativus L. HOM05D002268 ORTHO05D006626 1.0e-18 97.4 55 85.5
Phvul.011G059500 Phaseolus vulgaris HOM05D002268 ORTHO05D006626 1.0e-18 97.4 59 81.4
Solyc11g065870.3 Solanum lycopersicum HOM05D002268 ORTHO05D006626 1.0e-18 97.4 67 74.6
Sopen11g025600 Solanum pennellii HOM05D002268 ORTHO05D006626 1.0e-18 97.4 67 74.6
arahy.Tifrunner.gnm1.ann1.I6T88V Arachis hypogaea HOM05D002268 ORTHO05D006626 1.4e-18 97.1 56 82.1
SGA_v2.0_scaffold42G16106 Striga asiatica HOM05D002268 ORTHO05D006626 1.4e-18 97.1 67 74.6
Manes.06G165100 Manihot esculenta HOM05D002268 ORTHO05D006626 1.8e-18 96.7 64 76.6
Sc06g0006280 Simmondsia chinensis HOM05D002268 ORTHO05D006626 1.8e-18 96.7 56 82.1
Sc06g0006620 Simmondsia chinensis HOM05D002268 ORTHO05D006626 1.8e-18 96.7 56 82.1
THA.LOC104799102 Tarenaya hassleriana HOM05D002268 ORTHO05D006626 1.8e-18 96.7 66 72.7
Eucgr.J00770 Eucalyptus grandis HOM05D002268 ORTHO05D006626 2.3e-18 96.3 56 83.9
Glyma.12G057600 Glycine max HOM05D002268 ORTHO05D006626 2.3e-18 96.3 67 73.1
Lj1C332G7 Lonicera japonica HOM05D002268 ORTHO05D006626 2.3e-18 96.3 68 70.6
vmacro04211 Vaccinium macrocarpon HOM05D002268 ORTHO05D000047 2.3e-18 96.3 72 69.4
Actinidia16328 Actinidia chinensis HOM05D002268 ORTHO05D006626 3.0e-18 95.9 64 76.6
CiPaw.13G161600 Carya illinoinensis HOM05D002268 ORTHO05D006626 3.0e-18 95.9 67 74.6
Aqoxy1G00257 Aquilegia oxysepala HOM05D002268 ORTHO05D006626 4.0e-18 95.5 55 85.5
CAN.G599.8 Capsicum annuum HOM05D002268 ORTHO05D006626 4.0e-18 95.5 55 83.6
Ca_11285_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006626 4.0e-18 95.5 68 70.6
Ca_30226_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006626 4.0e-18 95.5 68 70.6
ClCG02G023290 Citrullus lanatus HOM05D002268 ORTHO05D006626 4.0e-18 95.5 55 83.6
Psat7g212800 Pisum sativum HOM05D002268 ORTHO05D006626 4.0e-18 95.5 68 70.6
Cpa.g.sc84.63 Carica papaya HOM05D002268 ORTHO05D006626 5.2e-18 95.1 68 70.6
Lj3g0007359 Lotus japonicus HOM05D002268 ORTHO05D006626 5.2e-18 95.1 67 71.6
Peaxi162Scf00004g02222 Petunia axillaris HOM05D002268 ORTHO05D006626 5.2e-18 95.1 67 71.6
GSVIVG01025275001 Vitis vinifera HOM05D002268 ORTHO05D006626 5.2e-18 95.1 67 73.1
Atru.chr3.2734 Acer truncatum HOM05D002268 ORTHO05D006626 6.8e-18 94.7 67 71.6
AUR62000114 Chenopodium quinoa HOM05D002268 ORTHO05D006937 6.8e-18 94.7 67 71.6
Duzib170G0271 Durio zibethinus HOM05D002268 ORTHO05D006626 6.8e-18 94.7 67 70.1
FvH4_1g30400 Fragaria vesca HOM05D002268 ORTHO05D006626 6.8e-18 94.7 63 76.2
FAN23G0767 Fragaria x ananassa HOM05D002268 ORTHO05D006626 6.8e-18 94.7 63 76.2
FAN26G2056 Fragaria x ananassa HOM05D002268 ORTHO05D006626 6.8e-18 94.7 63 76.2
TPR.G35024 Trifolium pratense HOM05D002268 ORTHO05D006626 6.8e-18 94.7 68 70.6
EL10Ac4g10276 Beta vulgaris HOM05D002268 ORTHO05D006626 8.8e-18 94.4 56 82.1
Thecc.09G232500 Theobroma cacao HOM05D002268 ORTHO05D006626 8.8e-18 94.4 56 82.1
Aa31sc172G20 Aethionema arabicum HOM05D002268 ORTHO05D006626 1.2e-17 94.0 67 68.7
MD11G1197100 Malus domestica HOM05D002268 ORTHO05D006626 1.2e-17 94.0 55 81.8
Potri.009G054200 Populus trichocarpa HOM05D002268 ORTHO05D006626 1.2e-17 94.0 58 81.0
RcHm_v2.0_Chr3g0490621 Rosa chinensis HOM05D002268 ORTHO05D006626 1.2e-17 94.0 55 81.8
DCAR_029948 Daucus carota HOM05D002268 ORTHO05D006626 1.5e-17 93.6 55 81.8
Nn7g36127 Nelumbo nucifera HOM05D002268 ORTHO05D006626 1.5e-17 93.6 67 70.1
Prupe.4G247300 Prunus persica HOM05D002268 ORTHO05D006626 1.5e-17 93.6 68 69.1
Hund07516 Selenicereus undatus HOM05D002268 ORTHO05D006626 1.5e-17 93.6 57 80.7
Ah.06g194290 Amaranthus hybridus HOM05D002268 ORTHO05D006626 2.0e-17 93.2 55 83.6
CDE10G0602 Ceratophyllum demersum HOM05D002268 ORTHO05D006626 2.0e-17 93.2 69 69.6
Glyma.11G176315 Glycine max HOM05D002268 ORTHO05D006626 2.0e-17 93.2 54 83.3
ATR0605G248 Amborella trichopoda HOM05D002268 ORTHO05D006626 2.6e-17 92.8 72 66.7
EL10Ac4g10260 Beta vulgaris HOM05D002268 ORTHO05D006626 2.6e-17 92.8 56 80.4
Sabra09G0039500 Salix brachista HOM05D002268 ORTHO05D006626 2.6e-17 92.8 55 83.6
AL3G23710 Arabidopsis lyrata HOM05D002268 ORTHO05D006626 3.4e-17 92.4 67 68.7
AT3G12080 Arabidopsis thaliana HOM05D002268 ORTHO05D006626 3.4e-17 92.4 69 65.2
BcaB06g25547 Brassica carinata HOM05D002268 ORTHO05D006626 3.4e-17 92.4 57 77.2
BcaNung06701 Brassica carinata HOM05D002268 ORTHO05D006626 3.4e-17 92.4 57 77.2
CARHR086640 Cardamine hirsuta HOM05D002268 ORTHO05D006626 3.4e-17 92.4 57 77.2
ECA233G1364 Erigeron canadensis HOM05D002268 ORTHO05D006626 3.4e-17 92.4 55 80.0
Gohir.A08G013840 Gossypium hirsutum HOM05D002268 ORTHO05D006626 3.4e-17 92.4 61 75.4
Gorai.004G019700 Gossypium raimondii HOM05D002268 ORTHO05D006626 3.4e-17 92.4 61 75.4
Lsat_1_v5_gn_6_47501 Lactuca sativa HOM05D002268 ORTHO05D006626 3.4e-17 92.4 56 78.6
MD03G1176500 Malus domestica HOM05D002268 ORTHO05D006626 3.4e-17 92.4 55 80.0
Pp3c11_19380 Physcomitrium patens HOM05D002268 ORTHO05D006626 3.4e-17 92.4 56 78.6
Rhsim13G0221900 Rhododendron simsii HOM05D002268 ORTHO05D006626 3.4e-17 92.4 57 78.9
TWI60G0961 Tripterygium wilfordii HOM05D002268 ORTHO05D006626 3.4e-17 92.4 56 80.4
arahy.Tifrunner.gnm1.ann1.0B1337 Arachis hypogaea HOM05D002268 ORTHO05D006626 4.4e-17 92.0 63 76.2
Ciclev10014514m.g Citrus clementina HOM05D002268 ORTHO05D006626 4.4e-17 92.0 67 71.6
CSS0000345 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006626 5.7e-17 91.7 55 81.8
CSS0030566 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006626 5.7e-17 91.7 55 81.8
Carub.0003s1142 Capsella rubella HOM05D002268 ORTHO05D006626 5.7e-17 91.7 67 67.2
Thhalv10020226m.g Eutrema salsugineum HOM05D002268 ORTHO05D006626 5.7e-17 91.7 67 67.2
AUR62019293 Chenopodium quinoa HOM05D002268 ORTHO05D006626 7.5e-17 91.3 57 77.2
FAN19G0796 Fragaria x ananassa HOM05D002268 ORTHO05D006626 7.5e-17 91.3 73 67.1
PSO339G2962 Papaver somniferum HOM05D002268 ORTHO05D006626 7.5e-17 91.3 67 67.2
MSTRG.17589 Avicennia marina HOM05D002268 ORTHO05D006626 9.8e-17 90.9 67 68.7
BcaC05g29292 Brassica carinata HOM05D002268 ORTHO05D006626 9.8e-17 90.9 57 75.4
A05p37270 Brassica napus HOM05D002268 ORTHO05D006626 9.8e-17 90.9 57 75.4
C05p55740 Brassica napus HOM05D002268 ORTHO05D006626 9.8e-17 90.9 57 75.4
BolC5t34241H Brassica oleracea HOM05D002268 ORTHO05D006626 9.8e-17 90.9 57 75.4
BraA05t22523Z Brassica rapa HOM05D002268 ORTHO05D006626 9.8e-17 90.9 57 75.4
Gohir.D08G024300 Gossypium hirsutum HOM05D002268 ORTHO05D006626 9.8e-17 90.9 61 73.8
Os11g0638000 Oryza sativa ssp. japonica HOM05D002268 ORTHO05D006626 9.8e-17 90.9 66 71.2
Sp3g10310 Schrenkiella parvula HOM05D002268 ORTHO05D006626 9.8e-17 90.9 57 75.4
PSO384G3976 Papaver somniferum HOM05D002268 ORTHO05D006626 1.3e-16 90.5 67 67.2
Migut.N02312 Erythranthe guttata HOM05D002268 ORTHO05D006626 1.7e-16 90.1 65 70.8
Mapoly0022s0147 Marchantia polymorpha HOM05D002268 ORTHO05D006626 1.7e-16 90.1 72 63.9
unitig_699.g19128 Utricularia gibba HOM05D002268 ORTHO05D006626 1.7e-16 90.1 55 78.2
HanXRQChr07g0206341 Helianthus annuus HOM05D002268 ORTHO05D006626 2.2e-16 89.7 59 72.9
Zm00001eb115290 Zea mays HOM05D002268 ORTHO05D006626 3.7e-16 89.0 56 76.8
Cc07_g19630 Coffea canephora HOM05D002268 ORTHO05D006626 4.8e-16 88.6 68 67.6
BcaB08g35090 Brassica carinata HOM05D002268 ORTHO05D006626 6.3e-16 88.2 57 73.7
HPP92_014272 Vanilla planifolia HOM05D002268 ORTHO05D006626 4.1e-15 85.5 57 73.7
AagrBONN_evm.TU.Sc2ySwM_344.2875 Anthoceros agrestis HOM05D002268 ORTHO05D006626 9.1e-15 84.3 52 75.0
HPP92_024482 Vanilla planifolia HOM05D002268 ORTHO05D006626 9.1e-15 84.3 57 71.9
CBR_g20109 Chara braunii HOM05D002268 ORTHO05D006626 4.5e-14 82.0 57 66.7
SMO271G0063 Selaginella moellendorffii HOM05D002268 ORTHO05D006626 1.3e-13 80.5 62 58.1
MCO02G480 Micromonas commoda HOM05D002268 ORTHO05D006626 2.0e-09 66.6 56 53.6
ECA246G2471 Erigeron canadensis HOM05D002474 ORTHO05D007142 2.8e-08 62.8 60 45.0
VMungo1215G1553 Vigna mungo HOM05D002474 ORTHO05D007142 2.8e-08 62.8 62 48.4
CSS0044346 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D007142 3.7e-08 62.4 53 49.1
Dinv30985 Davidia involucrata HOM05D002474 ORTHO05D007142 1.4e-07 60.5 53 47.2
PGR142G0374 Punica granatum HOM05D002474 ORTHO05D007142 1.8e-07 60.1 52 48.1
Actinidia11725 Actinidia chinensis HOM05D002474 ORTHO05D007142 2.4e-07 59.7 62 41.9
Ca_13520_v3 Cicer arietinum L. HOM05D002474 ORTHO05D007142 2.4e-07 59.7 58 48.3
Phvul.003G090600 Phaseolus vulgaris HOM05D002474 ORTHO05D007142 2.4e-07 59.7 62 45.2
arahy.Tifrunner.gnm1.ann1.1P8C08 Arachis hypogaea HOM05D002474 ORTHO05D007142 3.1e-07 59.3 58 48.3
arahy.Tifrunner.gnm1.ann1.W79BEX Arachis hypogaea HOM05D002474 ORTHO05D007142 3.1e-07 59.3 58 48.3
MD04G1042800 Malus domestica HOM05D002474 ORTHO05D007142 3.1e-07 59.3 53 49.1
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 4.1e-07 58.9 51 51.0
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 4.1e-07 58.9 61 45.9
BraA04t16929Z Brassica rapa HOM05D002474 ORTHO05D007142 5.4e-07 58.5 61 45.9
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 7.0e-07 58.2 55 50.9
BolC4t26229H Brassica oleracea HOM05D002474 ORTHO05D007142 7.0e-07 58.2 55 50.9
Glyma.07G271300 Glycine max HOM05D002474 ORTHO05D007142 7.0e-07 58.2 60 45.0
Medtr4g134500 Medicago truncatula HOM05D002474 ORTHO05D007142 7.0e-07 58.2 60 45.0
Psat0s2555g0320 Pisum sativum HOM05D002474 ORTHO05D007142 7.0e-07 58.2 60 45.0
Rhsim11G0114900 Rhododendron simsii HOM05D002474 ORTHO05D007142 7.0e-07 58.2 60 43.3
vmacro01627 Vaccinium macrocarpon HOM05D002474 ORTHO05D007142 7.0e-07 58.2 60 43.3
GSVIVG01018503001 Vitis vinifera HOM05D002474 ORTHO05D007142 7.0e-07 58.2 53 47.2
MSTRG.16457 Avicennia marina HOM05D002474 ORTHO05D007142 9.2e-07 57.8 71 40.8
CBR_g2956 Chara braunii HOM05D000019 ORTHO05D000353 9.2e-07 57.8 69 37.7
Prupe.5G038000 Prunus persica HOM05D002474 ORTHO05D007142 9.2e-07 57.8 62 41.9
QL02p103729 Quercus lobata HOM05D002474 ORTHO05D007142 9.2e-07 57.8 63 42.9
Thecc.06G063000 Theobroma cacao HOM05D002474 ORTHO05D007142 9.2e-07 57.8 54 46.3
FAN16G1529 Fragaria x ananassa HOM05D002474 ORTHO05D007142 1.2e-06 57.4 75 36.0
FAN21G2400 Fragaria x ananassa HOM05D002474 ORTHO05D007142 1.2e-06 57.4 75 36.0
FAN25G2389 Fragaria x ananassa HOM05D002474 ORTHO05D007142 1.2e-06 57.4 75 36.0
Lj4g0011201 Lotus japonicus HOM05D002474 ORTHO05D007142 1.2e-06 57.4 60 43.3
BcaC07g38021 Brassica carinata HOM05D002474 ORTHO05D007142 1.6e-06 57.0 55 49.1
A02p22490 Brassica napus HOM05D002474 ORTHO05D007142 1.6e-06 57.0 55 49.1
A04p10150 Brassica napus HOM05D002474 ORTHO05D007142 1.6e-06 57.0 55 49.1
A10p06280 Brassica napus HOM05D002474 ORTHO05D007142 1.6e-06 57.0 55 49.1
BolC8t48411H Brassica oleracea HOM05D002474 ORTHO05D007142 1.6e-06 57.0 55 49.1
CANSAT01G1519 Cannabis sativa HOM05D002474 ORTHO05D007142 1.6e-06 57.0 58 44.8
Duzib268G0482 Durio zibethinus HOM05D002474 ORTHO05D007142 1.6e-06 57.0 54 44.4
FvH4_3g20580 Fragaria vesca HOM05D002474 ORTHO05D007142 1.6e-06 57.0 62 40.3
FAN11G0845 Fragaria x ananassa HOM05D002474 ORTHO05D007142 1.6e-06 57.0 62 40.3
MBI03_g28951_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D007142 1.6e-06 57.0 58 44.8
BcaC05g26122 Brassica carinata HOM05D002474 ORTHO05D007142 2.0e-06 56.6 55 49.1
BolC5t30798H Brassica oleracea HOM05D002474 ORTHO05D007142 2.0e-06 56.6 55 49.1
Cc02_g23800 Coffea canephora HOM05D002474 ORTHO05D007142 2.0e-06 56.6 54 46.3
HanXRQChr12g0367101 Helianthus annuus HOM05D002474 ORTHO05D007142 2.0e-06 56.6 54 48.1
Hma1.2p1_0157F.1_g069220 Hydrangea macrophylla HOM05D002474 ORTHO05D007142 2.0e-06 56.6 51 47.1
Hma1.2p1_0157F.1_g069230 Hydrangea macrophylla HOM05D002474 ORTHO05D007142 2.0e-06 56.6 51 47.1
Peaxi162Scf00071g00020 Petunia axillaris HOM05D002474 ORTHO05D007142 2.0e-06 56.6 63 41.3
RcHm_v2.0_Chr5g0034601 Rosa chinensis HOM05D002474 ORTHO05D007142 2.0e-06 56.6 62 40.3
TPR.G5978 Trifolium pratense HOM05D002474 ORTHO05D007142 2.0e-06 56.6 62 41.9
HPP92_023952 Vanilla planifolia HOM05D002474 ORTHO05D007142 2.0e-06 56.6 66 47.0
Aqoxy6G02786 Aquilegia oxysepala HOM05D002474 ORTHO05D007142 2.7e-06 56.2 56 46.4
Lsat_1_v5_gn_9_123041 Lactuca sativa HOM05D002474 ORTHO05D007142 2.7e-06 56.2 58 44.8
Sp7g02120 Schrenkiella parvula HOM05D002474 ORTHO05D007142 2.7e-06 56.2 51 49.0
Ciclev10001219m.g Citrus clementina HOM05D002474 ORTHO05D007142 3.5e-06 55.8 51 47.1
Lj5A306G48 Lonicera japonica HOM05D002474 ORTHO05D007142 3.5e-06 55.8 54 44.4
CsaV3_3G006770 Cucumis sativus L. HOM05D002474 ORTHO05D007142 4.5e-06 55.5 69 39.1
Hund06555 Selenicereus undatus HOM05D002474 ORTHO05D007142 4.5e-06 55.5 51 49.0
Aa31LG9G1650 Aethionema arabicum HOM05D002474 ORTHO05D007142 5.9e-06 55.1 65 41.5
CAN.G492.43 Capsicum annuum HOM05D002474 ORTHO05D007142 5.9e-06 55.1 60 41.7
Thhalv10027686m.g Eutrema salsugineum HOM05D002474 ORTHO05D007142 5.9e-06 55.1 49 49.0
Lalb_Chr18g0047541 Lupinus albus HOM05D002474 ORTHO05D007142 5.9e-06 55.1 52 46.2
Psat0s5834g0040 Pisum sativum HOM05D002474 ORTHO05D007142 5.9e-06 55.1 60 43.3
SGA_v2.0_scaffold254G45227 Striga asiatica HOM05D002474 ORTHO05D007142 5.9e-06 55.1 71 40.8
unitig_82.g27138 Utricularia gibba HOM05D002474 ORTHO05D007142 5.9e-06 55.1 60 43.3
Atru.chr6.88 Acer truncatum HOM05D002474 ORTHO05D007142 7.7e-06 54.7 51 45.1
EL10Ac7g18100 Beta vulgaris HOM05D002474 ORTHO05D007142 7.7e-06 54.7 60 41.7
CARHR262220 Cardamine hirsuta HOM05D002474 ORTHO05D007142 7.7e-06 54.7 62 41.9
Gohir.A11G312300 Gossypium hirsutum HOM05D002474 ORTHO05D007142 7.7e-06 54.7 50 46.0
Gohir.D11G328800 Gossypium hirsutum HOM05D002474 ORTHO05D007142 7.7e-06 54.7 54 42.6
Gorai.007G360100 Gossypium raimondii HOM05D002474 ORTHO05D007142 7.7e-06 54.7 54 42.6
SalBow4G0251 Salvia bowleyana HOM05D002474 ORTHO05D007142 7.7e-06 54.7 63 44.4
SEGI_36950 Sequoiadendron giganteum HOM05D002474 ORTHO05D007142 7.7e-06 54.7 77 36.4
TWI14G0213 Tripterygium wilfordii HOM05D002474 ORTHO05D007142 7.7e-06 54.7 51 47.1


User provided reference genes

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