Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p029214 Quercus lobata HOM05D005401 ORTHO05D006582 1.3e-240 836.3 496 100.0
Haze_25113 Corylus avellana HOM05D005401 ORTHO05D006582 7.0e-199 697.6 497 79.5
CiPaw.03G129100 Carya illinoinensis HOM05D005401 ORTHO05D006582 1.6e-195 686.4 497 77.3
Dinv03731 Davidia involucrata HOM05D005401 ORTHO05D006582 3.2e-188 662.1 498 75.7
Cfa002819 Carpinus fangiana HOM05D005401 ORTHO05D006582 3.1e-183 645.6 496 75.0
GSVIVG01026512001 Vitis vinifera HOM05D005401 ORTHO05D006582 7.3e-180 634.4 497 72.4
Duzib147G0934 Durio zibethinus HOM05D005401 ORTHO05D006582 1.4e-178 630.2 498 71.5
Thecc.01G128200 Theobroma cacao HOM05D005401 ORTHO05D006582 1.2e-177 627.1 497 72.2
Gohir.D11G230200 Gossypium hirsutum HOM05D005401 ORTHO05D006582 1.7e-176 623.2 497 67.0
Prupe.6G159400 Prunus persica HOM05D005401 ORTHO05D006582 2.2e-176 622.9 431 80.0
TWI79G0453 Tripterygium wilfordii HOM05D005401 ORTHO05D006582 2.2e-176 622.9 497 70.4
Gohir.A11G221000 Gossypium hirsutum HOM05D005401 ORTHO05D006582 6.4e-176 621.3 497 71.8
Rhsim10G0136100 Rhododendron simsii HOM05D005401 ORTHO05D006582 8.3e-176 620.9 496 70.6
Dinv24333 Davidia involucrata HOM05D005401 ORTHO05D006582 1.1e-175 620.5 502 66.1
Gorai.003G067300 Gossypium raimondii HOM05D005401 ORTHO05D006582 2.4e-175 619.4 498 65.3
Hma1.2p1_0528F.1_g173030 Hydrangea macrophylla HOM05D005401 ORTHO05D006582 4.1e-175 618.6 496 72.0
Gohir.A11G226902 Gossypium hirsutum HOM05D005401 ORTHO05D006582 9.2e-175 617.5 498 65.1
CANSAT01G1454 Cannabis sativa HOM05D005401 ORTHO05D006582 5.9e-174 614.8 498 64.3
Manes.13G082700 Manihot esculenta HOM05D005401 ORTHO05D006582 1.7e-173 613.2 498 70.3
Potri.007G108200 Populus trichocarpa HOM05D005401 ORTHO05D006582 5.0e-173 611.7 498 65.1
Actinidia06639 Actinidia chinensis HOM05D005401 ORTHO05D006582 1.1e-172 610.5 497 69.4
Nn1g06207 Nelumbo nucifera HOM05D005401 ORTHO05D006582 5.6e-172 608.2 506 69.0
Ciclev10000834m.g Citrus clementina HOM05D005401 ORTHO05D006582 9.5e-172 607.4 413 75.3
COL.COLO4_14025 Corchorus olitorius HOM05D005401 ORTHO05D006582 3.1e-170 602.4 497 74.4
PGR102G1978 Punica granatum HOM05D005401 ORTHO05D006582 1.7e-168 596.7 499 70.5
TAR628G0360 Trochodendron aralioides HOM05D005401 ORTHO05D006582 2.2e-168 596.3 508 65.7
RhsimUnG0132800 Rhododendron simsii HOM05D005401 ORTHO05D006582 1.3e-165 587.0 571 55.9
Sc16g0003880 Simmondsia chinensis HOM05D005401 ORTHO05D006582 3.9e-165 585.5 497 68.6
vmacro12864 Vaccinium macrocarpon HOM05D005401 ORTHO05D006582 3.9e-165 585.5 517 60.9
PSO170G5022 Papaver somniferum HOM05D005401 ORTHO05D006582 6.6e-165 584.7 498 61.8
Sed0020894 Sechium edule HOM05D005401 ORTHO05D006582 1.5e-164 583.6 497 68.0
CSS0027531 Camellia sinensis var. sinensis HOM05D005401 ORTHO05D006582 3.3e-164 582.4 452 65.7
AUR62003599 Chenopodium quinoa HOM05D005401 ORTHO05D006582 3.3e-164 582.4 506 66.6
THA.LOC104799501 Tarenaya hassleriana HOM05D005401 ORTHO05D006582 4.3e-164 582.0 498 62.7
Oeu024886.1 Olea europaea HOM05D005401 ORTHO05D006582 2.1e-163 579.7 496 67.3
DCAR_001363 Daucus carota HOM05D005401 ORTHO05D006582 6.2e-163 578.2 496 67.7
Atru.chr4.842 Acer truncatum HOM05D005401 ORTHO05D006582 1.1e-162 577.4 427 69.8
AL8G42040 Arabidopsis lyrata HOM05D005401 ORTHO05D006582 5.2e-162 575.1 502 59.4
Lsat_1_v5_gn_7_27421 Lactuca sativa HOM05D005401 ORTHO05D006582 5.2e-162 575.1 513 63.9
MD01G1002400 Malus domestica HOM05D005401 ORTHO05D006582 1.5e-161 573.5 521 67.8
Eucgr.H04948 Eucalyptus grandis HOM05D005401 ORTHO05D006582 2.6e-161 572.8 414 77.3
AT5G64630 Arabidopsis thaliana HOM05D005401 ORTHO05D006582 4.4e-161 572.0 502 61.8
BraA06t26078Z Brassica rapa HOM05D005401 ORTHO05D006582 4.4e-161 572.0 501 69.5
HanXRQChr04g0116521 Helianthus annuus HOM05D005401 ORTHO05D006582 1.3e-160 570.5 496 67.9
BcaB02g09807 Brassica carinata HOM05D005401 ORTHO05D006582 2.9e-160 569.3 509 58.9
CsaV3_6G041720 Cucumis sativus L. HOM05D005401 ORTHO05D006582 1.1e-159 567.4 496 66.9
AUR62017910 Chenopodium quinoa HOM05D005401 ORTHO05D006582 1.4e-159 567.0 522 59.2
PSO017G4890 Papaver somniferum HOM05D005401 ORTHO05D006582 5.4e-159 565.1 508 60.6
Carub.0008s2542 Capsella rubella HOM05D005401 ORTHO05D006582 2.7e-158 562.8 499 58.7
BcaC01g02694 Brassica carinata HOM05D005401 ORTHO05D006582 6.0e-158 561.6 501 63.1
C03p61560 Brassica napus HOM05D005401 ORTHO05D006582 6.0e-158 561.6 501 63.1
ECA236G1881 Erigeron canadensis HOM05D005401 ORTHO05D006582 7.8e-158 561.2 498 65.7
Migut.H00736 Erythranthe guttata HOM05D005401 ORTHO05D006582 7.8e-158 561.2 498 60.2
MSTRG.23445 Avicennia marina HOM05D005401 ORTHO05D006582 1.0e-157 560.8 504 60.7
Sopen11g001760 Solanum pennellii HOM05D005401 ORTHO05D006582 1.0e-157 560.8 431 73.1
Cc07_g18120 Coffea canephora HOM05D005401 ORTHO05D006582 1.7e-157 560.1 495 59.4
BolC3t18416H Brassica oleracea HOM05D005401 ORTHO05D006582 6.6e-157 558.1 508 62.4
Ah.02g121770 Amaranthus hybridus HOM05D005401 ORTHO05D006582 8.6e-157 557.8 498 65.7
Solyc11g005800.2 Solanum lycopersicum HOM05D005401 ORTHO05D006582 1.1e-156 557.4 431 72.9
Aqoxy5G02178 Aquilegia oxysepala HOM05D005401 ORTHO05D006582 8.1e-155 551.2 501 70.3
Lj4A848G70 Lonicera japonica HOM05D005401 ORTHO05D006582 6.8e-154 548.1 554 55.8
Aa31LG1G17320 Aethionema arabicum HOM05D005401 ORTHO05D006582 2.6e-153 546.2 411 65.0
PGSC0003DMG400028676 Solanum tuberosum HOM05D005401 ORTHO05D006582 1.7e-152 543.5 437 71.6
EL10Ac7g17633 Beta vulgaris HOM05D005401 ORTHO05D006582 5.4e-151 538.5 414 74.9
Psat7g046640 Pisum sativum HOM05D005401 ORTHO05D006582 2.3e-149 533.1 421 64.4
Lalb_Chr12g0203191 Lupinus albus HOM05D005401 ORTHO05D006582 3.0e-149 532.7 426 65.0
Sp2g27690 Schrenkiella parvula HOM05D005401 ORTHO05D006582 1.5e-148 530.4 499 67.1
Glyma.05G190800 Glycine max HOM05D005401 ORTHO05D006582 4.3e-148 528.9 422 64.0
Ca_17644_v3 Cicer arietinum L. HOM05D005401 ORTHO05D006582 5.6e-148 528.5 426 63.1
Glyma.08G156200 Glycine max HOM05D005401 ORTHO05D006582 9.6e-148 527.7 422 64.2
ClCG01G015480 Citrullus lanatus HOM05D005401 ORTHO05D006582 1.8e-146 523.5 500 65.6
Lalb_Chr13g0296571 Lupinus albus HOM05D005401 ORTHO05D006582 8.9e-146 521.2 422 64.2
Nitab4.5_0000805g0050 Nicotiana tabacum HOM05D005401 ORTHO05D006582 2.6e-145 519.6 430 70.9
Thhalv10004101m.g Eutrema salsugineum HOM05D005401 ORTHO05D006582 7.6e-145 518.1 498 56.0
CARHR278600 Cardamine hirsuta HOM05D005401 ORTHO05D006582 3.8e-144 515.8 501 66.3
Phvul.002G271200 Phaseolus vulgaris HOM05D005401 ORTHO05D006582 3.8e-144 515.8 545 52.5
RcHm_v2.0_Chr2g0120381 Rosa chinensis HOM05D005401 ORTHO05D006582 4.9e-144 515.4 415 72.0
FAN23G2510 Fragaria x ananassa HOM05D005401 ORTHO05D006582 3.2e-143 512.7 414 63.8
FvH4_1g24150 Fragaria vesca HOM05D005401 ORTHO05D006582 4.6e-142 508.8 414 70.8
Lalb_Chr00c34g0408611 Lupinus albus HOM05D005401 ORTHO05D006582 1.9e-140 503.4 426 62.9
Os08g0108200 Oryza sativa ssp. japonica HOM05D005401 ORTHO05D006582 4.3e-140 502.3 517 54.2
EL10Ac6g15280 Beta vulgaris HOM05D005401 ORTHO05D006582 9.6e-140 501.1 475 59.4
VMungo0251G3661 Vigna mungo HOM05D005401 ORTHO05D006582 1.6e-139 500.4 400 64.0
MBI06_g43013_MAGBIO Magnolia biondii HOM05D005401 ORTHO05D006582 1.1e-138 497.7 457 58.6
HPP92_001192 Vanilla planifolia HOM05D005401 ORTHO05D006582 6.4e-136 488.4 421 60.3
ATR1136G147 Amborella trichopoda HOM05D005401 ORTHO05D006582 4.2e-135 485.7 443 60.3
Medtr8g093540 Medicago truncatula HOM05D005401 ORTHO05D006582 3.5e-134 482.6 415 59.5
A06p31360 Brassica napus HOM05D005401 ORTHO05D006582 7.9e-134 481.5 502 56.0
Zm00001eb260310 Zea mays HOM05D005401 ORTHO05D006582 2.3e-133 479.9 518 51.2
MELO3C008048.2 Cucumis melo HOM05D005401 ORTHO05D006582 6.7e-133 478.4 331 81.3
CDE02G0389 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 9.0e-130 468.0 496 58.1
FAN26G1589 Fragaria x ananassa HOM05D005401 ORTHO05D006582 5.8e-129 465.3 414 67.1
Lj4g0023934 Lotus japonicus HOM05D005401 ORTHO05D006582 1.7e-128 463.8 421 57.2
FAN28G1662 Fragaria x ananassa HOM05D005401 ORTHO05D006582 2.9e-128 463.0 414 66.7
Peaxi162Scf00012g01522 Petunia axillaris HOM05D005401 ORTHO05D006582 8.4e-128 461.5 459 62.3
Hund08501 Selenicereus undatus HOM05D005401 ORTHO05D006582 1.9e-127 460.3 498 58.0
arahy.Tifrunner.gnm1.ann1.LMDE4E Arachis hypogaea HOM05D005401 ORTHO05D006582 7.1e-127 458.4 407 58.2
arahy.Tifrunner.gnm1.ann1.N6RYVU Arachis hypogaea HOM05D005401 ORTHO05D006582 7.1e-127 458.4 428 56.8
Nitab4.5_0000877g0070 Nicotiana tabacum HOM05D005401 ORTHO05D006582 5.6e-124 448.7 430 57.9
SHI11477 Sapria himalayana HOM05D005401 ORTHO05D006582 8.2e-123 444.9 438 60.5
FAN19G2420 Fragaria x ananassa HOM05D005401 ORTHO05D006582 3.4e-121 439.5 414 64.3
HPP92_001165 Vanilla planifolia HOM05D005401 ORTHO05D006582 1.6e-118 430.6 381 59.3
Sabra07G0088600 Salix brachista HOM05D005401 ORTHO05D006582 2.4e-114 416.8 450 52.9
SGA_v2.0_scaffold355G49767 Striga asiatica HOM05D005401 ORTHO05D006582 3.9e-109 399.4 394 62.2
unitig_899.g14701 Utricularia gibba HOM05D005401 ORTHO05D006582 1.1e-106 391.3 396 55.6
AUR62043710 Chenopodium quinoa HOM05D005401 ORTHO05D006582 2.2e-104 383.6 431 52.7
TPR.G37327 Trifolium pratense HOM05D005401 ORTHO05D006582 1.1e-98 364.8 285 64.6
Mapoly0080s0001 Marchantia polymorpha HOM05D005401 ORTHO05D006582 4.5e-97 359.4 414 47.3
AagrBONN_evm.TU.Sc2ySwM_117.3371 Anthoceros agrestis HOM05D005401 ORTHO05D006582 2.7e-94 350.1 414 53.4
CBR_g20440 Chara braunii HOM05D005401 ORTHO05D006582 2.7e-81 307.0 404 42.8
SEGI_26195 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 4.7e-70 269.6 252 67.5
HanXRQChr04g0116511 Helianthus annuus HOM05D005401 ORTHO05D006582 2.3e-69 267.3 296 50.7
Actinidia20088 Actinidia chinensis HOM05D005401 ORTHO05D006582 1.3e-67 261.5 245 58.4
Pp3c1_14660 Physcomitrium patens HOM05D005401 ORTHO05D006582 2.0e-65 254.2 431 44.3
Pp3c1_14663 Physcomitrium patens HOM05D005401 ORTHO05D006582 2.0e-65 254.2 431 44.3
Cc06_g17340 Coffea canephora HOM05D005401 ORTHO05D006582 2.5e-63 247.3 250 54.0
PRCOL_00001389 Prasinoderma coloniale HOM05D005401 ORTHO05D006582 3.0e-61 240.4 454 35.2
Cc00_g25980 Coffea canephora HOM05D005401 ORTHO05D006582 2.7e-57 227.3 247 51.4
Cc06_g17330 Coffea canephora HOM05D005401 ORTHO05D006582 9.5e-55 218.8 245 51.0
SEGI_17010 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 6.0e-49 199.5 135 71.1
MD15G1342000 Malus domestica HOM05D005401 ORTHO05D006582 3.3e-47 193.7 242 47.1
Cpa.g.sc42.131 Carica papaya HOM05D005401 ORTHO05D006582 2.1e-46 191.0 146 67.1
MCO05G520 Micromonas commoda HOM05D005401 ORTHO05D006582 8.1e-46 189.1 481 29.5
Cc00_g32180 Coffea canephora HOM05D005401 ORTHO05D006582 1.4e-45 188.3 217 49.3
Cc00_g35900 Coffea canephora HOM05D005401 ORTHO05D006582 3.4e-44 183.7 114 76.3
BcaB02g09802 Brassica carinata HOM05D005401 ORTHO05D006582 2.4e-42 177.6 230 55.7
TPR.G8435 Trifolium pratense HOM05D005401 ORTHO05D006582 6.0e-41 172.9 146 59.6
MD15G1342300 Malus domestica HOM05D005401 ORTHO05D006582 1.2e-30 138.7 114 64.0
Cfa027226 Carpinus fangiana HOM05D005401 ORTHO05D006582 8.1e-30 136.0 235 35.7
Cpa.g.c33663 Carica papaya HOM05D005401 ORTHO05D006582 9.0e-29 132.5 77 81.8
CDE10G0537 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 1.5e-28 131.7 110 60.9
ClCG01G015490 Citrullus lanatus HOM05D005401 ORTHO05D006582 1.5e-28 131.7 83 78.3
Actinidia08420 Actinidia chinensis HOM05D005401 ORTHO05D006582 2.6e-28 131.0 83 73.5
Cfa026613 Carpinus fangiana HOM05D003901 ORTHO05D004511 5.4e-26 123.2 374 25.4
Cpa.g.sc3234.2 Carica papaya HOM05D005401 ORTHO05D006582 4.8e-22 110.2 69 75.4
PRCOL_00000149 Prasinoderma coloniale HOM05D003901 ORTHO05D004511 8.1e-22 109.4 400 25.0
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 5.4e-18 96.7 86 54.7
BcaB02g09805 Brassica carinata HOM05D005401 ORTHO05D006582 9.3e-18 95.9 238 33.2
SMO139G0105 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 8.7e-16 89.4 459 24.0
SMO165G0087 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 8.7e-16 89.4 459 24.0
Sabra04G0124700 Salix brachista HOM05D003901 ORTHO05D004511 1.9e-15 88.2 458 22.7
Cre13.g575950 Chlamydomonas reinhardtii HOM05D003901 ORTHO05D004511 3.3e-15 87.4 387 21.7
MCO11G428 Micromonas commoda HOM05D003901 ORTHO05D004511 5.6e-15 86.7 393 24.7
MCO11G429 Micromonas commoda HOM05D003901 ORTHO05D004511 5.6e-15 86.7 393 24.7
TWI31G1346 Tripterygium wilfordii HOM05D003901 ORTHO05D004511 5.6e-15 86.7 431 22.3
Potri.009G144800 Populus trichocarpa HOM05D003901 ORTHO05D004511 1.6e-14 85.1 431 22.3
Zm00001eb307860 Zea mays HOM05D003901 ORTHO05D004511 1.6e-14 85.1 453 23.0
Os09g0567700 Oryza sativa ssp. japonica HOM05D003901 ORTHO05D004511 3.7e-14 84.0 447 22.6
Potri.004G184900 Populus trichocarpa HOM05D003901 ORTHO05D004511 6.2e-14 83.2 458 22.1
CDE06G1793 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 1.1e-13 82.4 310 25.5
Zm00001eb121570 Zea mays HOM05D003901 ORTHO05D004511 2.4e-13 81.3 447 22.4
Manes.04G005300 Manihot esculenta HOM05D003901 ORTHO05D004511 9.0e-13 79.3 297 23.9
HanXRQChr04g0116501 Helianthus annuus HOM05D005401 ORTHO05D006582 1.2e-12 79.0 39 84.6
Gohir.A08G004600 Gossypium hirsutum HOM05D003901 ORTHO05D004511 1.5e-12 78.6 447 21.5
Psat1g035320 Pisum sativum HOM05D005401 ORTHO05D006582 1.5e-12 78.6 74 58.1
CBR_g60059 Chara braunii HOM05D003901 ORTHO05D004511 2.0e-12 78.2 437 23.6
Thecc.09G286400 Theobroma cacao HOM05D003901 ORTHO05D004511 2.0e-12 78.2 288 24.7
Psat5g256560 Pisum sativum HOM05D003901 ORTHO05D004511 3.4e-12 77.4 297 24.2
Atru.chr3.3302 Acer truncatum HOM05D003901 ORTHO05D004511 4.5e-12 77.0 302 24.8
Carub.0005s1017 Capsella rubella HOM05D003901 ORTHO05D004511 4.5e-12 77.0 458 22.1
CARHR104350 Cardamine hirsuta HOM05D003901 ORTHO05D004511 9.9e-12 75.9 448 21.0
FvH4_3g24580 Fragaria vesca HOM05D003901 ORTHO05D004511 1.3e-11 75.5 289 24.2
RcHm_v2.0_Chr1g0317731 Rosa chinensis HOM05D003901 ORTHO05D004511 1.3e-11 75.5 274 25.9
Psat7g085120 Pisum sativum HOM05D005401 ORTHO05D006582 2.2e-11 74.7 52 67.3
Lj3g0011305 Lotus japonicus HOM05D005401 ORTHO05D006582 3.2e-10 70.9 82 47.6
Psat4g107600 Pisum sativum HOM05D005401 ORTHO05D006582 3.2e-10 70.9 50 64.0
Ah.15g095680 Amaranthus hybridus HOM05D003901 ORTHO05D004511 4.2e-10 70.5 402 20.4
Psat7g237960 Pisum sativum HOM05D005401 ORTHO05D006582 2.1e-06 58.2 38 68.4


User provided reference genes

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