Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 0.0e+00 1401.7 1090 100.0
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 2.2e-277 959.5 1089 80.0
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 4.6e-243 845.5 1028 80.9
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 1.0e-234 817.8 678 80.4
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 1.0e-234 817.8 675 74.2
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 8.3e-229 798.1 681 73.0
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 1.2e-227 794.3 1103 64.1
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 2.1e-224 783.5 648 75.5
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 4.0e-223 779.2 654 74.8
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 4.6e-219 765.8 678 73.3
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 1.3e-218 764.2 673 72.5
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 2.1e-216 756.9 676 72.5
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 8.1e-216 755.0 680 70.9
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 8.9e-215 751.5 668 71.0
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 1.5e-214 750.7 622 74.6
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 1.3e-213 747.7 619 77.1
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 2.9e-213 746.5 628 73.1
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 3.8e-213 746.1 628 73.2
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 6.4e-213 745.3 677 70.0
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 1.4e-212 744.2 678 70.9
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 1.2e-211 741.1 640 73.4
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 3.0e-210 736.5 624 76.9
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 8.7e-210 734.9 674 71.5
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 1.6e-208 730.7 618 70.1
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 2.1e-208 730.3 653 70.3
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.8e-207 727.2 670 69.9
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 2.4e-207 726.9 684 68.4
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 1.2e-206 724.5 676 66.9
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 1.5e-206 724.2 674 69.4
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 2.0e-206 723.8 667 69.4
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 2.0e-206 723.8 674 68.4
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 3.4e-206 723.0 676 70.4
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.9e-204 717.2 654 69.0
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 2.4e-204 716.8 682 73.0
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 7.1e-204 715.3 651 69.0
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 9.3e-204 714.9 677 70.9
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 9.3e-204 714.9 637 71.1
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 3.5e-203 713.0 677 70.8
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 4.6e-203 712.6 677 70.8
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 7.9e-203 711.8 677 70.8
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 1.3e-202 711.1 697 70.6
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 5.1e-202 709.1 597 73.9
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 2.5e-201 706.8 680 69.1
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 3.3e-201 706.4 674 70.2
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.1e-200 703.7 696 70.1
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 8.1e-200 701.8 695 67.5
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 3.1e-199 699.9 598 74.2
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 3.1e-199 699.9 676 68.5
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 4.5e-198 696.0 676 70.0
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 4.5e-198 696.0 696 67.0
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 1.3e-197 694.5 570 76.3
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 3.8e-197 693.0 696 62.1
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 3.2e-196 689.9 688 65.0
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 1.2e-195 688.0 679 65.4
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 3.5e-195 686.4 574 74.6
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 3.0e-194 683.3 615 68.9
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 6.7e-194 682.2 695 69.1
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 9.6e-193 678.3 612 71.6
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 4.0e-191 672.9 560 75.2
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 5.8e-190 669.1 694 62.0
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 8.4e-189 665.2 724 61.9
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 3.5e-187 659.8 671 64.8
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 3.0e-186 656.8 691 65.8
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 3.9e-186 656.4 923 71.1
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 6.7e-186 655.6 628 68.5
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 2.5e-185 653.7 573 69.8
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 3.3e-185 653.3 683 60.3
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 4.3e-185 652.9 590 69.0
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 9.6e-185 651.7 689 63.7
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 1.6e-184 651.0 615 68.6
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 1.1e-183 648.3 603 70.6
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 1.4e-183 647.9 675 66.1
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 1.0e-181 641.7 622 67.2
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 1.7e-181 641.0 626 68.8
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 5.0e-181 639.4 674 63.6
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 1.9e-180 637.5 689 64.6
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 1.2e-179 634.8 681 60.1
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 6.1e-179 632.5 621 68.4
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 1.0e-178 631.7 627 67.0
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 1.4e-175 621.3 628 63.7
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 1.8e-175 620.9 624 65.9
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 1.2e-174 618.2 583 66.6
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 2.6e-174 617.1 701 58.2
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 3.4e-174 616.7 512 71.3
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 7.7e-174 615.5 694 63.3
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.0e-173 615.1 702 60.1
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 1.0e-173 615.1 691 63.7
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 1.7e-173 614.4 698 62.6
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 6.5e-173 612.5 512 71.1
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 1.4e-172 611.3 512 70.9
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 1.4e-172 611.3 512 70.9
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 4.2e-172 609.8 512 70.7
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 3.7e-168 596.7 648 60.8
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 3.1e-167 593.6 634 66.4
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 9.1e-167 592.0 634 66.2
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 1.5e-166 591.3 679 60.5
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 1.5e-166 591.3 512 70.7
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 2.0e-166 590.9 656 62.8
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 1.9e-164 584.3 592 65.9
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 1.6e-163 581.3 621 64.3
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 4.1e-151 540.0 501 64.9
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 1.5e-148 531.6 491 75.2
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 3.5e-118 430.6 623 55.1
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 6.2e-115 419.9 637 50.5
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.8e-114 418.3 294 76.5
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 5.2e-114 416.8 548 57.5
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 3.2e-111 407.5 303 72.9
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 7.8e-94 349.7 215 82.3
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 5.8e-89 333.6 524 48.7
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 6.4e-88 330.1 548 47.8
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 2.4e-79 301.6 349 65.3
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 2.7e-78 298.1 523 48.6
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 7.4e-76 290.0 336 62.8
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 2.6e-73 281.6 331 62.8
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 3.4e-73 281.2 364 60.7
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 1.0e-69 269.6 183 77.0
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 1.3e-69 269.2 519 44.7
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 1.5e-68 265.8 518 43.8
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 2.4e-66 258.5 276 63.0
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 1.2e-62 246.1 183 77.6
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 1.3e-61 242.7 304 49.0
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 1.6e-54 219.2 203 64.5
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 2.9e-24 118.6 148 54.1
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 2.8e-22 112.1 88 62.5
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 8.0e-22 110.5 69 78.3
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 4.0e-21 108.2 65 78.5
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 2.8e-19 102.1 71 74.6
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 1.3e-16 93.2 202 34.2
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 3.3e-15 88.6 94 59.6
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 1.2e-14 86.7 109 50.5
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 2.8e-14 85.5 78 79.5
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 2.8e-14 85.5 106 52.8
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 2.8e-14 85.5 249 37.3
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 4.7e-14 84.7 263 34.6
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 5.8e-12 77.8 110 48.2
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 7.5e-12 77.4 428 26.6
arahy.Tifrunner.gnm1.ann1.6LH71N Arachis hypogaea HOM05D005307 ORTHO05D006695 4.1e-10 71.6 140 55.7
C02p34840 Brassica napus HOM05D005307 ORTHO05D027550 7.0e-10 70.9 248 35.1
BraA01t03245Z Brassica rapa HOM05D005307 ORTHO05D006695 3.3e-07 62.0 89 42.7
AagrBONN_evm.TU.Sc2ySwM_344.2987 Anthoceros agrestis HOM05D005307 ORTHO05D006695 7.3e-07 60.8 118 45.8
Migut.M00654 Erythranthe guttata HOM05D001023 ORTHO05D000912 2.1e-06 59.3 108 38.0
CARHR043940 Cardamine hirsuta HOM05D001023 ORTHO05D000912 3.6e-06 58.5 107 37.4
SGA_v2.0_scaffold181G39781 Striga asiatica HOM05D001023 ORTHO05D000912 6.2e-06 57.8 107 36.4


User provided reference genes

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