Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 8.6e-60 233.4 114 100.0
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 6.4e-55 217.2 114 89.5
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 6.4e-55 217.2 114 89.5
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 1.4e-54 216.1 113 90.3
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 2.4e-54 215.3 114 89.5
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 9.2e-54 213.4 114 88.6
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 2.0e-53 212.2 114 89.5
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 5.9e-53 210.7 114 83.3
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 7.8e-53 210.3 114 86.8
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 7.8e-53 210.3 114 86.0
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 1.0e-52 209.9 114 83.3
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.3e-52 209.5 114 86.8
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 1.7e-52 209.1 114 84.2
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 3.9e-52 208.0 114 85.1
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 5.0e-52 207.6 114 83.3
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 5.0e-52 207.6 114 82.5
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 5.0e-52 207.6 114 82.5
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 6.6e-52 207.2 114 83.3
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 8.6e-52 206.8 114 83.3
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 8.6e-52 206.8 114 85.1
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 1.1e-51 206.5 114 81.6
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.1e-51 206.5 114 83.3
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 1.1e-51 206.5 114 83.3
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 1.1e-51 206.5 114 85.1
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 1.1e-51 206.5 114 84.2
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.5e-51 206.1 114 83.3
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.5e-51 206.1 114 84.2
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 1.5e-51 206.1 114 82.5
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 1.5e-51 206.1 114 85.1
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 1.9e-51 205.7 114 83.3
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 1.9e-51 205.7 114 83.3
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.9e-51 205.7 114 83.3
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.9e-51 205.7 114 83.3
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.9e-51 205.7 114 83.3
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.5e-51 205.3 114 83.3
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 2.5e-51 205.3 114 82.5
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 3.3e-51 204.9 114 82.5
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 3.3e-51 204.9 114 81.6
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 4.3e-51 204.5 114 83.3
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 4.3e-51 204.5 114 85.1
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 4.3e-51 204.5 114 83.3
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 5.6e-51 204.1 114 81.6
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 5.6e-51 204.1 114 83.3
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 7.3e-51 203.8 114 83.3
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 7.3e-51 203.8 114 85.1
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 9.5e-51 203.4 114 80.7
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 9.5e-51 203.4 114 81.6
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 9.5e-51 203.4 114 80.7
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 1.2e-50 203.0 114 83.3
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 1.6e-50 202.6 114 78.9
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 1.6e-50 202.6 114 81.6
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 1.6e-50 202.6 114 82.5
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 1.6e-50 202.6 114 81.6
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.1e-50 202.2 114 81.6
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 2.1e-50 202.2 114 83.3
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 2.8e-50 201.8 114 80.7
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 2.8e-50 201.8 114 83.3
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 2.8e-50 201.8 114 80.7
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 3.6e-50 201.4 114 83.3
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 3.6e-50 201.4 114 82.5
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 3.6e-50 201.4 114 82.5
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 3.6e-50 201.4 114 82.5
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 4.7e-50 201.1 114 82.5
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 4.7e-50 201.1 114 79.8
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 4.7e-50 201.1 114 80.7
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 6.2e-50 200.7 114 78.9
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 6.2e-50 200.7 114 81.6
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 6.2e-50 200.7 114 81.6
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 6.2e-50 200.7 114 81.6
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 8.0e-50 200.3 114 83.3
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 8.0e-50 200.3 114 82.5
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 8.0e-50 200.3 114 82.5
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 1.0e-49 199.9 114 81.6
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 1.0e-49 199.9 114 81.6
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 1.0e-49 199.9 114 82.5
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 1.4e-49 199.5 114 81.6
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 1.4e-49 199.5 114 81.6
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 1.4e-49 199.5 114 81.6
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 1.4e-49 199.5 114 81.6
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 1.4e-49 199.5 114 79.8
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 1.8e-49 199.1 114 81.6
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 1.8e-49 199.1 114 81.6
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 1.8e-49 199.1 114 81.6
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 1.8e-49 199.1 114 82.5
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 1.8e-49 199.1 114 80.7
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 2.3e-49 198.7 114 81.6
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 2.3e-49 198.7 114 82.5
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 3.1e-49 198.4 114 80.7
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 3.1e-49 198.4 114 80.7
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 3.1e-49 198.4 114 80.7
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 3.1e-49 198.4 114 81.6
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 3.1e-49 198.4 114 81.6
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 3.1e-49 198.4 114 80.7
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 3.1e-49 198.4 114 78.9
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 4.0e-49 198.0 114 78.1
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 5.2e-49 197.6 114 81.6
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 5.2e-49 197.6 114 82.5
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 5.2e-49 197.6 114 80.7
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 6.8e-49 197.2 114 79.8
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 6.8e-49 197.2 114 79.8
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 6.8e-49 197.2 114 79.8
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 6.8e-49 197.2 114 79.8
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 6.8e-49 197.2 114 80.7
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 8.9e-49 196.8 114 77.2
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 8.9e-49 196.8 114 78.9
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 8.9e-49 196.8 114 78.9
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 1.2e-48 196.4 114 80.7
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 1.2e-48 196.4 114 79.8
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 1.5e-48 196.1 114 78.9
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 1.5e-48 196.1 114 79.8
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 1.5e-48 196.1 114 79.8
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 2.6e-48 195.3 114 78.1
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 2.6e-48 195.3 114 78.1
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 5.8e-48 194.1 114 78.1
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 5.8e-48 194.1 114 78.9
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 7.5e-48 193.7 126 73.0
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 9.8e-48 193.4 114 79.8
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 2.4e-46 188.7 114 77.2
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 2.7e-45 185.3 114 75.4
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 2.7e-45 185.3 114 74.6
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 4.6e-45 184.5 114 76.3
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 4.6e-45 184.5 114 77.2
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 1.0e-44 183.3 114 73.7
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 1.0e-44 183.3 114 73.7
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 5.0e-44 181.0 114 73.7
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 5.0e-44 181.0 114 72.8
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 2.5e-43 178.7 114 71.9
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 1.6e-42 176.0 98 82.7
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 2.1e-42 175.6 98 83.7
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 2.8e-42 175.3 106 75.5
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 6.2e-42 174.1 98 79.6
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 2.3e-41 172.2 98 78.6
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 2.2e-39 165.6 113 68.1
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 1.9e-38 162.5 114 69.3
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 7.1e-38 160.6 102 68.6
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 2.7e-37 158.7 114 68.4
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 1.7e-36 156.0 125 63.2
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.3e-36 155.6 114 62.3
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 1.5e-35 152.9 88 79.5
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.6e-34 148.3 86 77.9
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 5.8e-32 141.0 82 79.3
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 1.6e-29 132.9 81 74.1
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.8e-26 122.1 63 90.5
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 3.6e-26 121.7 69 75.4
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.1e-25 120.2 114 52.6
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 3.6e-18 95.1 114 48.2
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 1.5e-16 89.7 45 91.1
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 3.4e-16 88.6 45 91.1
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 3.8e-15 85.1 67 59.7
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 4.6e-13 78.2 48 79.2
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 2.5e-11 72.4 102 40.2
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 2.5e-11 72.4 68 54.4
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 9.0e-09 63.9 35 82.9


User provided reference genes

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