Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 0.0e+00 2094.7 1035 100.0
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 0.0e+00 1244.2 1052 64.1
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 6.4e-311 1070.8 1050 57.2
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 5.6e-299 1031.2 1092 55.2
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 5.5e-246 855.1 1085 47.9
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 5.5e-246 855.1 1090 48.4
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 3.4e-240 835.9 1068 47.9
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 7.1e-238 828.2 1097 47.0
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 8.5e-231 804.7 1096 46.4
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 9.1e-225 784.6 1124 44.3
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 1.5e-224 783.9 1087 45.6
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 2.2e-223 780.0 1088 46.1
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 3.8e-223 779.2 1124 42.4
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 6.7e-220 768.5 1088 44.9
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 7.4e-211 738.4 1084 43.4
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 2.0e-208 730.3 1079 43.2
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 1.7e-207 727.2 1081 43.6
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 3.8e-207 726.1 1083 43.0
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 1.1e-206 724.5 1086 42.3
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 2.5e-206 723.4 1067 44.1
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.8e-204 717.2 1091 42.6
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.8e-201 707.2 1081 43.1
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 7.7e-200 701.8 1078 42.9
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 2.5e-198 696.8 1080 43.4
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 2.7e-197 693.3 1084 42.6
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 4.7e-197 692.6 1083 42.0
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 3.4e-195 686.4 1105 41.4
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 5.5e-190 669.1 1094 41.4
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 2.8e-186 656.8 1084 40.9
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 1.1e-182 644.8 1069 39.6
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 1.9e-182 644.0 1063 41.1
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 6.8e-180 635.6 1042 40.7
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 7.0e-177 625.5 1065 39.0
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 2.3e-175 620.5 1035 39.6
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 4.3e-174 616.3 1062 40.4
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 1.6e-173 614.4 1065 38.8
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 5.2e-172 609.4 1078 38.8
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 5.0e-167 592.8 1065 39.1
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 2.1e-165 587.4 1072 37.7
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 4.6e-160 569.7 1068 38.2
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 1.9e-158 564.3 1074 37.2
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 1.6e-157 561.2 430 67.7
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 2.4e-156 557.4 1084 38.0
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 3.1e-156 557.0 1158 35.5
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 4.4e-155 553.1 1059 37.8
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.7e-151 541.2 1139 35.4
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 3.9e-151 540.0 1056 36.7
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 5.1e-151 539.7 1056 37.2
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 8.1e-149 532.3 1043 37.5
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 2.4e-148 530.8 1009 37.1
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 7.6e-147 525.8 844 41.8
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 5.4e-145 519.6 1073 34.7
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 7.8e-144 515.8 1100 35.0
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 3.6e-141 506.9 1033 35.5
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.1e-140 503.8 1037 35.9
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.1e-137 495.4 1139 34.2
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 7.9e-136 489.2 918 37.8
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 2.3e-135 487.6 1063 35.5
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 1.1e-134 485.3 1051 36.3
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 4.0e-132 476.9 1054 36.1
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 6.9e-132 476.1 1054 36.1
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 1.3e-130 471.9 1029 35.3
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 2.9e-130 470.7 1032 35.8
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 1.4e-129 468.4 1141 32.7
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 2.7e-128 464.2 1057 33.6
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 4.0e-124 450.3 1078 33.6
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 2.9e-122 444.1 547 49.5
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 1.1e-121 442.2 1093 32.7
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 2.1e-120 438.0 1084 32.9
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 1.0e-119 435.6 1052 32.6
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 1.3e-117 428.7 1082 33.6
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 3.7e-117 427.2 1056 31.7
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 9.0e-116 422.5 703 40.5
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.3e-114 418.7 1050 33.1
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 8.5e-114 416.0 1060 33.1
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 4.5e-107 393.7 1050 32.5
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 2.6e-102 377.9 947 32.8
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 1.7e-101 375.2 1071 31.6
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 2.2e-101 374.8 707 37.3
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 1.1e-100 372.5 1092 31.5
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 1.1e-97 362.5 780 36.5
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 1.8e-87 328.6 1047 29.3
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 5.9e-83 313.5 1035 29.9
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 9.4e-81 306.2 1059 29.1
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 8.0e-80 303.1 1031 28.9
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 5.2e-79 300.4 787 33.8
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 2.4e-76 291.6 547 37.5
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 4.1e-76 290.8 783 32.2
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 1.2e-75 289.3 799 31.3
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 2.3e-74 285.0 778 31.7
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 7.2e-73 280.0 879 30.1
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 3.0e-71 274.6 700 32.3
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 3.0e-71 274.6 700 32.3
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 3.0e-71 274.6 700 32.3
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 3.0e-71 274.6 968 28.5
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 5.7e-70 270.4 704 32.2
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 1.3e-69 269.2 704 32.5
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 6.3e-69 266.9 702 31.9
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.1e-68 266.2 566 36.7
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 7.8e-67 260.0 770 30.5
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 5.0e-66 257.3 672 31.7
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 2.1e-64 251.9 705 31.3
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 6.8e-63 246.9 647 33.8
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 2.4e-60 238.4 1127 25.6
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.5e-57 229.2 438 36.8
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 2.1e-56 225.3 1038 27.6
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 3.0e-50 204.9 772 28.4
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 4.9e-45 187.6 294 40.8
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 8.3e-45 186.8 308 37.0
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.9e-44 185.7 468 32.7
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 4.6e-43 181.0 525 31.6
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 8.1e-40 170.2 217 48.4
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 2.7e-35 155.2 1054 25.0
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 3.9e-34 151.4 266 36.5
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 8.7e-34 150.2 291 34.7
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 3.3e-33 148.3 679 26.8
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 3.6e-32 144.8 218 42.2
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 4.8e-32 144.4 798 24.1
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 6.2e-32 144.1 426 30.8
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 1.4e-31 142.9 149 50.3
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 4.0e-31 141.4 1020 24.0
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 1.2e-30 139.8 640 26.7
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 1.5e-30 139.4 315 34.6
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 4.4e-30 137.9 138 53.6
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 8.4e-29 133.7 787 23.9
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 1.5e-25 122.9 103 60.2
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 1.5e-25 122.9 136 48.5
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 6.2e-24 117.5 100 57.0
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 6.2e-24 117.5 133 51.9
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 1.5e-22 112.8 135 46.7
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 4.5e-22 111.3 297 27.9
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 1.3e-21 109.8 131 45.8
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 1.7e-21 109.4 181 40.3
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 4.9e-21 107.8 128 46.1
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 4.9e-21 107.8 278 29.9
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.9e-20 105.9 295 26.4
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 1.3e-16 93.2 467 26.3
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 2.1e-16 92.4 320 26.9
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 4.8e-16 91.3 69 60.9
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 3.4e-14 85.1 96 50.0
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 4.9e-13 81.3 213 35.2
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 1.1e-12 80.1 93 48.4
Glyma.20G205301 Glycine max HOM05D005259 ORTHO05D006402 1.6e-08 66.2 177 32.8
Glyma.20G205250 Glycine max HOM05D005259 ORTHO05D006402 4.1e-07 61.6 166 29.5


User provided reference genes

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