Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 2178.3 1151 100.0
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1835.1 1149 84.2
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1820.8 1150 82.9
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1737.2 1167 79.1
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1657.1 1153 75.9
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1652.9 1153 75.6
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1639.8 1151 76.3
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1629.8 1149 77.6
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1612.4 1152 75.8
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1609.0 1183 74.9
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1603.2 1149 74.0
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1602.4 1152 75.5
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1599.7 1175 72.5
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1598.6 1154 76.0
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1597.8 1166 73.1
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1597.8 1144 74.5
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1595.1 1148 73.6
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1595.1 1154 76.0
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1594.3 1155 73.9
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1592.4 1160 74.6
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1591.6 1150 74.5
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1591.2 1189 71.2
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1586.6 1144 73.0
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1584.7 1155 75.8
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1579.7 1175 71.8
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1579.3 1167 72.2
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1578.5 1152 73.9
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1571.2 1189 70.9
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1570.1 1151 74.8
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1566.6 1160 74.5
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1563.5 1150 72.4
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1563.1 1161 71.7
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1559.3 1151 74.6
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1559.3 1149 73.3
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1556.2 1153 72.4
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1553.1 1155 74.2
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1545.8 1160 71.9
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1543.9 1174 73.4
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1540.4 1154 74.2
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1540.4 1154 74.2
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1540.4 1148 71.3
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1539.6 1153 73.5
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1536.9 1148 73.3
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1535.0 1148 73.3
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1525.4 1151 72.5
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1524.6 1148 72.7
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1515.0 1155 70.1
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1501.9 1160 71.1
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1494.6 1152 70.6
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1493.8 1141 71.7
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1491.5 1156 70.5
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1490.7 1156 70.2
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1489.9 1149 71.6
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1488.4 1171 70.4
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1474.5 1152 70.7
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1474.1 1154 71.1
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1473.8 1158 68.3
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1471.1 1146 70.9
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1466.8 1154 70.0
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1466.1 1155 70.8
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1465.3 1155 70.7
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1464.1 1158 70.8
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1458.7 1157 70.4
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1451.8 1173 69.6
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1450.3 1173 69.4
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1449.1 1173 69.5
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1449.1 1174 69.3
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1447.6 1173 69.4
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1446.4 1153 70.3
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1446.0 1162 69.0
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1445.6 1172 69.4
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1444.1 1152 69.7
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1442.6 1174 69.0
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1442.2 1174 69.1
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1430.2 1162 69.3
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1422.9 1113 70.5
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1416.4 1156 68.7
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1409.8 1148 69.0
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1404.0 1156 68.1
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1395.9 1158 66.3
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1391.7 1213 64.1
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1387.1 1155 65.7
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1365.9 1165 64.1
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1363.6 1151 67.0
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1343.9 1212 63.3
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1341.6 1187 63.9
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1321.6 887 77.6
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1309.7 934 76.8
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1187.2 913 69.9
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1185.2 1036 65.2
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 0.0e+00 1105.1 1212 54.0
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 0.0e+00 1098.6 1232 53.3
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 0.0e+00 1095.1 1241 50.8
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 1.7e-304 1049.7 738 73.0
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.4e-290 1003.4 1165 52.4
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.4e-274 949.5 741 67.9
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 4.2e-255 885.6 1400 41.3
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 1.0e-248 864.4 590 80.0
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 9.4e-247 857.8 589 75.9
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 2.4e-226 790.0 519 78.4
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 3.5e-225 786.2 519 78.4
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 4.9e-211 739.2 519 74.8
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 1.4e-210 737.6 621 65.2
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 5.9e-209 732.3 623 64.4
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 1.5e-191 674.5 608 61.8
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 7.8e-177 625.5 572 60.8
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 2.4e-173 614.0 1178 37.3
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 9.9e-172 608.6 571 61.6
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 4.9e-171 606.3 552 61.6
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.6e-150 538.1 463 65.9
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 8.7e-144 515.8 548 54.9
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 2.6e-140 504.2 390 66.9
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 1.9e-138 498.0 331 76.7
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.5e-130 471.1 321 75.4
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 1.2e-116 425.6 488 54.3
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 4.8e-110 403.7 543 47.1
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 9.1e-109 399.4 376 59.0
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 8.0e-105 386.3 1197 28.1
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.5e-103 382.1 378 57.7
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.6e-92 345.5 358 51.7
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 2.5e-90 338.2 215 82.8
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 1.4e-88 332.4 1200 27.9
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 1.1e-85 322.8 440 48.4
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 3.7e-78 297.7 216 75.0
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 6.4e-78 297.0 252 65.5
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 9.2e-77 293.1 261 55.9
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 6.4e-70 270.4 242 64.0
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.5e-66 258.5 181 72.4
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 5.6e-66 257.3 149 88.6
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 9.5e-66 256.5 147 85.7
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 1.2e-63 249.6 367 43.9
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 5.4e-61 240.7 198 64.1
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 2.1e-60 238.8 373 43.4
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 1.0e-59 236.5 374 42.2
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 8.6e-59 233.4 374 42.2
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.1e-50 206.5 106 96.2
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 9.6e-50 203.4 113 90.3
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 2.4e-48 198.7 111 90.1
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 5.3e-48 197.6 113 88.5
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 9.9e-47 193.4 113 86.7
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 9.9e-47 193.4 113 86.7
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 6.0e-44 184.1 183 60.7
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 1.8e-43 182.6 109 86.2
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 1.3e-41 176.4 106 84.9
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 8.1e-41 173.7 590 28.3
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 9.9e-39 166.8 99 83.8
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.2e-38 165.6 89 91.0
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 5.5e-37 161.0 97 83.5
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 2.8e-33 148.7 82 92.7
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 3.5e-28 131.7 123 56.1
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 5.1e-27 127.9 173 46.8
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.8e-25 122.1 149 43.6
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 2.0e-23 115.9 72 83.3
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 3.4e-23 115.2 75 80.0
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 1.0e-22 113.6 75 78.7
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 1.4e-21 109.8 85 65.9
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 1.0e-19 103.6 91 63.7
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 1.8e-19 102.8 73 71.2
Lsat_1_v5_gn_1_111061 Lactuca sativa HOM05D004611 ORTHO05D233625 7.7e-07 60.8 55 61.8


User provided reference genes

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