Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 2536.5 1355 100.0
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 0.0e+00 2026.9 1359 80.7
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 0.0e+00 2016.9 1360 80.7
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 0.0e+00 2015.4 1360 79.6
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1983.8 1060 98.2
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 0.0e+00 1823.9 1364 72.7
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 0.0e+00 1807.7 1364 73.0
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 0.0e+00 1796.6 1362 71.7
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 0.0e+00 1791.9 1361 70.3
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 0.0e+00 1791.2 1362 71.8
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 0.0e+00 1769.6 1364 70.3
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 0.0e+00 1749.6 1362 69.8
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1748.4 1362 69.8
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 0.0e+00 1740.7 1364 69.5
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1736.9 1360 70.1
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1710.7 1361 68.7
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 0.0e+00 1710.3 1367 69.1
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 0.0e+00 1696.4 1363 68.2
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 0.0e+00 1687.5 1377 67.9
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 0.0e+00 1686.8 1366 68.2
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 0.0e+00 1684.5 1362 67.2
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1684.1 1362 68.2
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 0.0e+00 1681.8 1401 67.3
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1681.4 1362 67.2
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 0.0e+00 1671.8 1369 66.0
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 0.0e+00 1666.0 1408 66.0
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 0.0e+00 1659.8 1370 66.9
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 0.0e+00 1655.6 1361 67.0
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 0.0e+00 1647.1 1369 67.1
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 0.0e+00 1642.5 1368 64.8
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1639.4 1364 65.5
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1636.3 1363 65.5
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1634.0 1367 65.3
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1629.4 1369 64.8
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 0.0e+00 1617.8 1360 64.2
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 0.0e+00 1616.3 1366 64.4
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 0.0e+00 1611.7 1368 64.2
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 0.0e+00 1609.0 1359 65.9
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 0.0e+00 1604.7 1374 65.4
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 0.0e+00 1602.0 1369 64.9
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 0.0e+00 1600.1 1369 64.0
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 0.0e+00 1591.6 1371 63.9
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1582.0 1410 62.6
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 0.0e+00 1581.2 1367 63.6
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 0.0e+00 1579.7 1365 64.5
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 0.0e+00 1578.1 1362 62.8
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 0.0e+00 1574.7 1380 63.8
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 0.0e+00 1565.1 1360 63.6
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1558.1 1191 69.4
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 0.0e+00 1545.4 1369 61.9
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1539.2 1368 63.3
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 0.0e+00 1539.2 1380 62.2
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 0.0e+00 1535.0 1368 62.7
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1518.8 1306 66.5
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 0.0e+00 1518.8 1350 62.3
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 0.0e+00 1517.7 1376 61.0
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1516.5 1375 62.3
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 0.0e+00 1515.0 1356 61.4
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1513.4 1371 62.4
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1512.3 1282 63.6
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1510.0 1369 61.9
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 0.0e+00 1505.0 1403 61.1
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1490.7 1367 60.9
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1484.9 1367 61.6
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 0.0e+00 1482.2 1369 60.6
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 0.0e+00 1473.4 1338 61.3
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 0.0e+00 1473.0 1400 60.1
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 0.0e+00 1470.3 1340 61.5
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 0.0e+00 1470.3 1375 60.6
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 0.0e+00 1463.0 1339 61.3
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1462.2 1335 60.9
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 0.0e+00 1462.2 1366 59.9
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1459.9 1331 60.8
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1453.3 1223 64.3
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 0.0e+00 1452.6 1371 59.3
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 0.0e+00 1452.2 1343 60.7
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 0.0e+00 1452.2 1338 60.5
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 0.0e+00 1451.8 1341 60.6
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 0.0e+00 1451.8 1344 61.0
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 0.0e+00 1447.2 1339 60.5
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1445.3 1331 61.2
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1442.2 1294 62.3
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1439.1 1200 64.7
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1431.0 1331 60.0
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1420.6 1257 62.6
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 0.0e+00 1405.6 1348 58.6
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 0.0e+00 1385.2 1369 57.7
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1361.7 1336 59.0
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 0.0e+00 1356.7 1070 68.0
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 0.0e+00 1337.0 1363 58.4
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 0.0e+00 1315.4 1375 55.8
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 0.0e+00 1313.9 1425 55.5
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1286.2 1213 59.1
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1277.7 1224 58.6
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 0.0e+00 1271.1 986 69.1
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 0.0e+00 1265.4 1371 53.3
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1245.7 1067 63.6
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1218.4 1367 52.7
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 0.0e+00 1140.6 1357 50.5
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 0.0e+00 1127.5 1217 53.2
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 0.0e+00 1126.3 960 63.9
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 0.0e+00 1085.1 1321 51.0
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 0.0e+00 1080.9 1369 48.9
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 3.7e-303 1045.4 957 59.0
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 6.4e-279 964.9 1030 52.3
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 4.1e-278 962.2 777 65.5
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.0e-276 957.6 1171 50.0
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 9.3e-270 934.5 770 65.5
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 6.7e-260 901.7 840 60.2
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.4e-254 883.2 717 64.6
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 3.7e-250 869.4 1070 51.2
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 4.2e-246 855.9 834 56.1
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 4.6e-245 852.4 1404 40.1
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 7.9e-237 825.1 1127 45.6
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 5.9e-216 755.7 1405 37.9
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.3e-191 674.9 501 72.3
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 2.4e-177 627.5 1099 38.9
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 6.2e-173 612.8 455 72.3
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 4.1e-169 600.1 627 54.4
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 2.0e-163 581.3 1556 32.1
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 6.6e-159 566.2 404 74.5
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 5.3e-156 556.6 341 92.7
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 4.3e-142 510.4 411 68.6
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 2.1e-120 438.3 274 93.1
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 4.8e-109 400.6 342 65.5
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.1e-104 385.2 321 62.9
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 4.4e-94 350.9 369 56.1
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 3.0e-87 328.2 428 47.0
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 2.6e-86 325.1 630 41.1
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 4.7e-80 304.3 1443 25.2
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 1.7e-61 242.7 1399 24.5
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 7.8e-51 207.2 228 54.4
Atru.chr4.2864 Acer truncatum HOM05D001406 ORTHO05D006300 6.6e-50 204.1 156 66.7
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 5.1e-42 177.9 114 75.4
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 8.1e-40 170.6 106 82.1
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 3.6e-32 145.2 235 40.4
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 2.6e-30 139.0 82 84.1
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 7.1e-28 131.0 87 73.6
Eucgr.D00108 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.7e-27 129.0 189 47.1
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 3.5e-27 128.6 114 60.5
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 3.0e-26 125.6 115 55.7
CsaV3_UNG075590 Cucumis sativus L. HOM05D001406 ORTHO05D034998 1.4e-15 90.1 83 62.7
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 5.3e-15 88.2 73 61.6
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 5.3e-15 88.2 73 61.6
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.2e-14 87.0 70 58.6
QL06p009199 Quercus lobata HOM05D001406 ORTHO05D337037 4.5e-14 85.1 89 52.8
Lsat_1_v5_gn_9_42060 Lactuca sativa HOM05D001406 ORTHO05D006300 1.8e-10 73.2 52 73.1
Medtr4g120490 Medicago truncatula HOM05D001406 ORTHO05D265975 2.2e-08 66.2 120 41.7
Sc13g0003400 Simmondsia chinensis HOM05D001406 ORTHO05D034998 3.7e-08 65.5 58 67.2
vmacro11427 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 3.7e-08 65.5 144 36.1
BraA03t14040Z Brassica rapa HOM05D002639 ORTHO05D003094 2.6e-06 59.3 48 64.6
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 2.6e-06 59.3 161 26.1
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 2.6e-06 59.3 150 27.3
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 4.5e-06 58.5 134 27.6
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 5.9e-06 58.2 178 24.7
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 7.7e-06 57.8 150 26.7
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 7.7e-06 57.8 150 26.7
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 7.7e-06 57.8 135 26.7
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 1.0e-05 57.4 134 26.9
FvH4_6g25220 Fragaria vesca HOM05D004602 ORTHO05D005906 1.0e-05 57.4 150 26.7
FAN14G4483 Fragaria x ananassa HOM05D004602 ORTHO05D005906 1.0e-05 57.4 150 26.7


User provided reference genes

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