Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 2.2e-188 662.1 334 100.0
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 9.0e-25 118.6 64 95.3
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 1.2e-24 118.2 64 93.8
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 1.2e-24 118.2 64 93.8
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 3.4e-24 116.7 64 92.2
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 4.5e-24 116.3 64 92.2
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 4.5e-24 116.3 64 92.2
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 4.5e-24 116.3 64 92.2
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 5.8e-24 115.9 64 90.6
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 5.8e-24 115.9 64 90.6
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 5.8e-24 115.9 64 90.6
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 5.8e-24 115.9 64 90.6
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 5.8e-24 115.9 64 90.6
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 1.0e-23 115.2 64 92.2
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 1.0e-23 115.2 64 90.6
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 1.0e-23 115.2 66 87.9
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 1.0e-23 115.2 64 90.6
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 1.3e-23 114.8 63 92.1
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 1.3e-23 114.8 64 89.1
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 1.7e-23 114.4 64 90.6
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 2.2e-23 114.0 64 89.1
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 2.2e-23 114.0 64 89.1
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 2.9e-23 113.6 64 89.1
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 2.9e-23 113.6 64 89.1
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 2.9e-23 113.6 64 89.1
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 2.9e-23 113.6 64 89.1
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 2.9e-23 113.6 64 87.5
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 2.9e-23 113.6 64 89.1
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 3.8e-23 113.2 64 90.6
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 3.8e-23 113.2 64 89.1
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 3.8e-23 113.2 64 89.1
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 3.8e-23 113.2 64 89.1
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 4.9e-23 112.8 83 71.1
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 4.9e-23 112.8 64 87.5
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 4.9e-23 112.8 64 89.1
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 6.5e-23 112.5 64 87.5
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 6.5e-23 112.5 64 87.5
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 6.5e-23 112.5 64 87.5
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 6.5e-23 112.5 64 89.1
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 6.5e-23 112.5 64 89.1
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 8.4e-23 112.1 64 85.9
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 8.4e-23 112.1 64 85.9
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 8.4e-23 112.1 64 87.5
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 1.1e-22 111.7 64 85.9
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 1.4e-22 111.3 64 85.9
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 1.4e-22 111.3 64 85.9
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 1.4e-22 111.3 64 85.9
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 1.4e-22 111.3 64 85.9
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 1.4e-22 111.3 64 85.9
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 1.4e-22 111.3 64 87.5
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 1.9e-22 110.9 64 84.4
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 1.9e-22 110.9 64 85.9
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 2.5e-22 110.5 83 69.9
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 2.5e-22 110.5 64 85.9
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 2.5e-22 110.5 64 85.9
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 2.5e-22 110.5 64 85.9
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 2.5e-22 110.5 64 85.9
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 3.2e-22 110.2 64 85.9
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 3.2e-22 110.2 64 87.5
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 3.2e-22 110.2 64 84.4
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 3.2e-22 110.2 64 85.9
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 5.5e-22 109.4 64 84.4
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 5.5e-22 109.4 64 85.9
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 5.5e-22 109.4 64 84.4
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 7.1e-22 109.0 64 84.4
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 7.1e-22 109.0 64 85.9
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 9.3e-22 108.6 64 84.4
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 1.2e-21 108.2 64 84.4
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 1.6e-21 107.8 64 82.8
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 1.6e-21 107.8 64 82.8
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 2.1e-21 107.5 64 85.9
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 2.1e-21 107.5 64 82.8
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 2.1e-21 107.5 68 80.9
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 2.1e-21 107.5 64 82.8
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.1e-21 107.5 64 82.8
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.1e-21 107.5 64 82.8
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.1e-21 107.5 64 82.8
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.1e-21 107.5 64 82.8
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 2.1e-21 107.5 64 82.8
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 2.1e-21 107.5 64 82.8
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 2.7e-21 107.1 64 82.8
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 3.5e-21 106.7 64 81.2
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 4.6e-21 106.3 64 82.8
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 6.0e-21 105.9 64 81.2
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 6.0e-21 105.9 64 81.2
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 6.0e-21 105.9 64 81.2
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 1.3e-20 104.8 64 81.2
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 1.8e-20 104.4 64 81.2
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 1.8e-20 104.4 64 81.2
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.8e-20 104.4 64 79.7
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 2.3e-20 104.0 63 82.5
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 3.0e-20 103.6 64 79.7
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 6.7e-20 102.4 63 82.5
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 6.7e-20 102.4 64 78.1
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 6.7e-20 102.4 64 78.1
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 1.5e-19 101.3 63 82.5
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 1.9e-19 100.9 64 78.1
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 4.3e-19 99.8 64 76.6
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 1.3e-18 98.2 64 76.6
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 4.8e-18 96.3 64 71.9
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 6.3e-18 95.9 64 73.4
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 8.2e-18 95.5 64 73.4
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 3.1e-17 93.6 98 55.1
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 6.9e-17 92.4 64 70.3
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 2.6e-16 90.5 64 68.8
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 3.4e-16 90.1 64 68.8
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 5.9e-16 89.4 52 84.6
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 2.9e-15 87.0 64 65.6
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 4.3e-11 73.2 45 73.3
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 1.8e-09 67.8 76 46.1
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 6.9e-09 65.9 45 66.7
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 6.9e-09 65.9 65 52.3
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 6.9e-09 65.9 68 48.5
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 2.0e-08 64.3 65 49.2
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 1.3e-07 61.6 64 43.8
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 1.3e-07 61.6 64 43.8
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 2.9e-07 60.5 56 58.9
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 3.8e-07 60.1 64 46.9
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 6.5e-07 59.3 99 36.4
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 1.9e-06 57.8 55 56.4


User provided reference genes

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