Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 2.7e-46 188.3 96 100.0
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 1.4e-42 176.0 92 98.9
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 4.0e-42 174.5 92 97.8
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 6.8e-34 147.1 93 83.9
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 2.9e-32 141.7 93 82.8
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 1.9e-31 139.0 93 78.5
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 3.9e-29 131.3 92 79.3
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 2.5e-28 128.6 92 75.0
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 7.3e-28 127.1 91 74.7
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 9.5e-28 126.7 92 73.9
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 3.6e-27 124.8 92 73.9
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 8.0e-27 123.6 93 71.0
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 1.4e-26 122.9 92 72.8
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 1.8e-26 122.5 92 69.6
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 3.1e-26 121.7 87 71.3
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 5.2e-26 120.9 87 70.1
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 5.2e-26 120.9 87 70.1
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 5.2e-26 120.9 86 73.3
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 8.9e-26 120.2 92 71.7
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 1.2e-25 119.8 87 72.4
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 1.5e-25 119.4 92 67.4
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 2.0e-25 119.0 87 67.8
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 4.4e-25 117.9 87 69.0
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 7.5e-25 117.1 87 69.0
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 7.5e-25 117.1 92 68.5
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 7.5e-25 117.1 92 68.5
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 9.8e-25 116.7 87 69.0
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 1.7e-24 115.9 87 66.7
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 1.7e-24 115.9 92 64.1
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.2e-24 115.5 87 67.8
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 2.2e-24 115.5 92 67.4
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 2.2e-24 115.5 92 64.1
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 3.7e-24 114.8 92 68.5
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 3.7e-24 114.8 87 67.8
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 3.7e-24 114.8 93 67.7
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 6.4e-24 114.0 92 64.1
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 1.1e-23 113.2 87 65.5
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 1.1e-23 113.2 87 65.5
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 1.2e-22 109.8 92 65.2
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 3.5e-22 108.2 92 59.8
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 3.5e-22 108.2 100 57.0
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 3.5e-22 108.2 92 64.1
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.7e-21 105.9 92 62.0
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 1.7e-21 105.9 87 64.4
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 2.3e-21 105.5 77 70.1
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 3.0e-21 105.1 91 60.4
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 3.9e-21 104.8 93 61.3
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 8.6e-21 103.6 87 60.9
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 1.1e-20 103.2 58 94.8
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 5.6e-20 100.9 92 57.6
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 7.3e-20 100.5 98 58.2
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 7.3e-20 100.5 92 60.9
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 7.3e-20 100.5 91 56.0
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 1.2e-19 99.8 81 61.7
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 1.2e-19 99.8 81 61.7
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 1.6e-19 99.4 78 64.1
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 2.1e-19 99.0 77 64.9
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 2.8e-19 98.6 92 57.6
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 2.8e-19 98.6 89 53.9
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 3.6e-19 98.2 86 59.3
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 4.7e-19 97.8 88 56.8
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 4.7e-19 97.8 76 63.2
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 8.1e-19 97.1 92 59.8
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 2.3e-18 95.5 77 63.6
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 3.1e-18 95.1 87 54.0
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 8.9e-18 93.6 92 56.5
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 1.2e-17 93.2 92 53.3
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 1.2e-17 93.2 74 59.5
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 9.9e-17 90.1 87 56.3
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 1.7e-16 89.4 87 55.2
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 3.7e-16 88.2 75 62.7
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 6.4e-16 87.4 77 57.1
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 8.3e-16 87.0 93 52.7
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 8.3e-16 87.0 77 53.2
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 8.3e-16 87.0 76 55.3
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 1.4e-15 86.3 91 54.9
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 1.4e-15 86.3 76 55.3
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 1.9e-15 85.9 76 55.3
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 5.4e-15 84.3 88 54.5
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 5.4e-15 84.3 85 50.6
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 5.4e-15 84.3 76 51.3
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 1.6e-14 82.8 93 45.2
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 2.1e-14 82.4 75 58.7
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 2.7e-14 82.0 92 51.1
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 2.7e-14 82.0 84 51.2
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 2.7e-14 82.0 94 45.7
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 3.5e-14 81.6 91 51.6
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 4.6e-14 81.3 75 53.3
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 4.6e-14 81.3 80 50.0
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 6.0e-14 80.9 78 55.1
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 6.0e-14 80.9 92 45.7
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 7.8e-14 80.5 85 49.4
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 7.8e-14 80.5 85 49.4
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 1.3e-13 79.7 84 50.0
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 1.3e-13 79.7 81 51.9
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 1.7e-13 79.3 92 43.5
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 2.3e-13 79.0 84 50.0
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 3.0e-13 78.6 89 52.8
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 3.9e-13 78.2 76 52.6
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 5.1e-13 77.8 78 52.6
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 8.6e-13 77.0 77 49.4
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 5.6e-12 74.3 78 50.0
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 7.3e-12 73.9 74 50.0
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 9.6e-12 73.6 88 44.3
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 1.2e-11 73.2 79 51.9
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 1.2e-11 73.2 81 50.6
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 2.8e-11 72.0 79 49.4
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 4.7e-11 71.2 79 50.6
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 4.7e-11 71.2 76 55.3
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 6.2e-11 70.9 67 56.7
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 1.1e-10 70.1 74 52.7
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 1.8e-10 69.3 76 44.7
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 2.4e-10 68.9 74 54.1
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 5.2e-10 67.8 78 43.6
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 5.8e-09 64.3 76 48.7
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 5.8e-09 64.3 77 45.5
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 1.3e-08 63.2 72 48.6
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 1.3e-08 63.2 76 40.8
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 3.8e-08 61.6 74 43.2
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 8.4e-08 60.5 82 45.1
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 1.9e-07 59.3 86 40.7
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 1.9e-07 59.3 75 41.3
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 5.4e-07 57.8 84 40.5
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 2.7e-06 55.5 77 40.3
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 3.5e-06 55.1 91 36.3
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 6.0e-06 54.3 75 41.3
HanXRQChr02g0048981 Helianthus annuus HOM05D003625 ORTHO05D004382 6.0e-06 54.3 89 42.7


User provided reference genes

Program Settings