Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p063869 Quercus lobata HOM05D003241 ORTHO05D003812 5.4e-99 364.4 191 100.0
QL06p002249 Quercus lobata HOM05D003241 ORTHO05D003812 2.4e-22 109.8 182 44.5
QL06p002393 Quercus lobata HOM05D003241 ORTHO05D003812 2.4e-22 109.8 182 44.5
QL11p041824 Quercus lobata HOM05D003241 ORTHO05D003812 9.1e-22 107.8 116 56.9
QL04p053119 Quercus lobata HOM05D003241 ORTHO05D003812 1.0e-20 104.4 109 58.7
PGR031G3475 Punica granatum HOM05D003241 ORTHO05D003812 5.0e-20 102.1 171 40.9
QL06p040345 Quercus lobata HOM05D003241 ORTHO05D003812 1.9e-19 100.1 173 43.9
Cfa015650 Carpinus fangiana HOM05D003241 ORTHO05D003812 2.5e-19 99.8 154 43.5
Atru.chr4.2711 Acer truncatum HOM05D003241 ORTHO05D003812 3.2e-19 99.4 173 42.8
Sed0020388 Sechium edule HOM05D003241 ORTHO05D003812 4.2e-19 99.0 129 51.9
CiPaw.02G097400 Carya illinoinensis HOM05D003241 ORTHO05D003812 5.5e-19 98.6 118 51.7
Haze_07845 Corylus avellana HOM05D003241 ORTHO05D003812 5.5e-19 98.6 94 58.5
vmacro13976 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 5.5e-19 98.6 117 48.7
Haze_00894 Corylus avellana HOM05D003241 ORTHO05D003812 7.2e-19 98.2 137 45.3
Cpa.g.sc115.47 Carica papaya HOM05D003241 ORTHO05D003812 9.4e-19 97.8 111 55.0
Nn5g27739 Nelumbo nucifera HOM05D003241 ORTHO05D003812 1.2e-18 97.4 117 49.6
RcHm_v2.0_Chr4g0416151 Rosa chinensis HOM05D003241 ORTHO05D003812 1.2e-18 97.4 117 51.3
RcHm_v2.0_Chr4g0416161 Rosa chinensis HOM05D003241 ORTHO05D003812 1.2e-18 97.4 117 51.3
FAN15G1779 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.7e-18 96.3 112 52.7
FAN20G2531 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.7e-18 96.3 112 52.7
FAN27G2894 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.7e-18 96.3 112 52.7
MBI18_g28212_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 2.7e-18 96.3 114 51.8
ClCG08G000520 Citrullus lanatus HOM05D003241 ORTHO05D003812 3.6e-18 95.9 107 53.3
SGA_v2.0_scaffold31G12724 Striga asiatica HOM05D003241 ORTHO05D003812 3.6e-18 95.9 136 47.1
Eucgr.J03092 Eucalyptus grandis HOM05D003241 ORTHO05D003812 4.7e-18 95.5 116 48.3
HanXRQChr09g0244631 Helianthus annuus HOM05D003241 ORTHO05D003812 4.7e-18 95.5 113 53.1
TAR381G1550 Trochodendron aralioides HOM05D003241 ORTHO05D003812 6.1e-18 95.1 117 48.7
TAR625G1302 Trochodendron aralioides HOM05D003241 ORTHO05D003812 6.1e-18 95.1 117 48.7
Aqoxy4G03221 Aquilegia oxysepala HOM05D003241 ORTHO05D003812 8.0e-18 94.7 113 50.4
MD13G1193700 Malus domestica HOM05D003241 ORTHO05D003812 8.0e-18 94.7 117 49.6
FAN17G1371 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.0e-17 94.4 112 51.8
FAN22G0104 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.0e-17 94.4 113 54.9
Lj2A813G14 Lonicera japonica HOM05D003241 ORTHO05D003812 1.0e-17 94.4 105 51.4
FvH4_4g15641 Fragaria vesca HOM05D003241 ORTHO05D003812 1.4e-17 94.0 112 51.8
FAN12G3728 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.4e-17 94.0 112 51.8
Oeu058578.1 Olea europaea HOM05D003241 ORTHO05D003812 1.4e-17 94.0 115 52.2
EL10Ac6g15598 Beta vulgaris HOM05D003241 ORTHO05D003812 1.8e-17 93.6 111 51.4
TAR571G0002 Trochodendron aralioides HOM05D003241 ORTHO05D003812 1.8e-17 93.6 117 48.7
CSS0028609 Camellia sinensis var. sinensis HOM05D003241 ORTHO05D003812 2.3e-17 93.2 131 45.8
Duzib268G1256 Durio zibethinus HOM05D003241 ORTHO05D003812 2.3e-17 93.2 117 49.6
QL09p049197 Quercus lobata HOM05D003241 ORTHO05D003812 2.3e-17 93.2 143 44.1
GSVIVG01035173001 Vitis vinifera HOM05D003241 ORTHO05D003812 2.3e-17 93.2 120 50.0
Dinv19008 Davidia involucrata HOM05D003241 ORTHO05D003812 3.0e-17 92.8 113 47.8
QL09p047982 Quercus lobata HOM05D003241 ORTHO05D337939 5.2e-17 92.0 46 97.8
MD16G1194300 Malus domestica HOM05D003241 ORTHO05D003812 6.7e-17 91.7 105 51.4
PSO013G0353 Papaver somniferum HOM05D003241 ORTHO05D003812 6.7e-17 91.7 117 46.2
Gohir.A04G045600 Gossypium hirsutum HOM05D003241 ORTHO05D003812 8.8e-17 91.3 117 48.7
Gohir.D05G337200 Gossypium hirsutum HOM05D003241 ORTHO05D003812 8.8e-17 91.3 117 48.7
Gorai.009G361400 Gossypium raimondii HOM05D003241 ORTHO05D003812 8.8e-17 91.3 117 48.7
Prupe.1G014100 Prunus persica HOM05D003241 ORTHO05D003812 8.8e-17 91.3 112 50.0
MELO3C022204.2 Cucumis melo HOM05D003241 ORTHO05D003812 1.2e-16 90.9 140 41.4
Migut.J00827 Erythranthe guttata HOM05D003241 ORTHO05D003812 1.2e-16 90.9 123 44.7
DCAR_019828 Daucus carota HOM05D003241 ORTHO05D003812 2.0e-16 90.1 117 44.4
Dinv09319 Davidia involucrata HOM05D003241 ORTHO05D003812 2.0e-16 90.1 118 47.5
PSO063G3239 Papaver somniferum HOM05D003241 ORTHO05D003812 2.6e-16 89.7 117 46.2
AL6G27800 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 3.3e-16 89.4 115 45.2
CsaV3_5G040300 Cucumis sativus L. HOM05D003241 ORTHO05D003812 3.3e-16 89.4 109 48.6
Manes.16G074400 Manihot esculenta HOM05D003241 ORTHO05D003812 3.3e-16 89.4 112 51.8
PSO339G1389 Papaver somniferum HOM05D003241 ORTHO05D003812 3.3e-16 89.4 118 45.8
AUR62018246 Chenopodium quinoa HOM05D003241 ORTHO05D003812 5.7e-16 88.6 118 46.6
Lsat_1_v5_gn_1_54260 Lactuca sativa HOM05D003241 ORTHO05D003812 5.7e-16 88.6 119 47.1
Zm00001eb140630 Zea mays HOM05D003241 ORTHO05D003812 5.7e-16 88.6 125 43.2
Eucgr.L01432 Eucalyptus grandis HOM05D003241 ORTHO05D003812 7.5e-16 88.2 116 45.7
unitig_77.g31483 Utricularia gibba HOM05D003241 ORTHO05D003812 1.3e-15 87.4 115 49.6
Thecc.07G135300 Theobroma cacao HOM05D003241 ORTHO05D003812 2.2e-15 86.7 117 46.2
CDE06G2045 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 2.8e-15 86.3 122 43.4
AUR62034840 Chenopodium quinoa HOM05D003241 ORTHO05D003812 2.8e-15 86.3 118 44.9
Duzib213G0093 Durio zibethinus HOM05D003241 ORTHO05D003812 2.8e-15 86.3 118 48.3
Nitab4.5_0004325g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 2.8e-15 86.3 117 46.2
Peaxi162Scf00296g00721 Petunia axillaris HOM05D003241 ORTHO05D003812 3.7e-15 85.9 117 47.0
SEGI_01763 Sequoiadendron giganteum HOM05D003241 ORTHO05D003812 3.7e-15 85.9 118 44.1
TWI32G0731 Tripterygium wilfordii HOM05D003241 ORTHO05D003812 3.7e-15 85.9 190 36.8
Nitab4.5_0004385g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 4.8e-15 85.5 117 46.2
PSO339G6261 Papaver somniferum HOM05D003241 ORTHO05D003812 6.3e-15 85.1 173 38.2
BcaC04g18847 Brassica carinata HOM05D003241 ORTHO05D003812 8.2e-15 84.7 108 47.2
Thhalv10012684m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 8.2e-15 84.7 108 46.3
ATR1098G045 Amborella trichopoda HOM05D003241 ORTHO05D003812 1.1e-14 84.3 113 46.0
CARHR196380 Cardamine hirsuta HOM05D003241 ORTHO05D003812 1.1e-14 84.3 108 46.3
Sp6g27340 Schrenkiella parvula HOM05D003241 ORTHO05D003812 1.1e-14 84.3 108 46.3
Solyc11g008460.1 Solanum lycopersicum HOM05D003241 ORTHO05D003812 1.8e-14 83.6 117 46.2
Sopen11g004250 Solanum pennellii HOM05D003241 ORTHO05D003812 1.8e-14 83.6 117 46.2
AT5G16780 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 2.4e-14 83.2 108 45.4
CDE03G0251 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 2.4e-14 83.2 109 45.0
PGSC0003DMG400007426 Solanum tuberosum HOM05D003241 ORTHO05D003812 2.4e-14 83.2 117 45.3
Potri.001G082100 Populus trichocarpa HOM05D003241 ORTHO05D003812 3.1e-14 82.8 112 46.4
A10p22440 Brassica napus HOM05D003241 ORTHO05D003812 4.1e-14 82.4 108 45.4
BolC9t58862H Brassica oleracea HOM05D003241 ORTHO05D003812 4.1e-14 82.4 108 45.4
BraA10t44303Z Brassica rapa HOM05D003241 ORTHO05D003812 4.1e-14 82.4 108 45.4
Aa31LG11G12850 Aethionema arabicum HOM05D003241 ORTHO05D003812 5.3e-14 82.0 108 46.3
Carub.0006s1500 Capsella rubella HOM05D003241 ORTHO05D003812 5.3e-14 82.0 108 45.4
Ciclev10000233m.g Citrus clementina HOM05D003241 ORTHO05D003812 5.3e-14 82.0 186 36.0
CAN.G321.38 Capsicum annuum HOM05D003241 ORTHO05D003812 1.2e-13 80.9 117 44.4
C09p60290 Brassica napus HOM05D003241 ORTHO05D003812 1.6e-13 80.5 108 45.4
HPP92_003413 Vanilla planifolia HOM05D003241 ORTHO05D008621 2.7e-13 79.7 114 45.6
Oeu011820.1 Olea europaea HOM05D003241 ORTHO05D003812 7.7e-13 78.2 120 45.8
SalBow3G1087 Salvia bowleyana HOM05D003241 ORTHO05D003812 1.0e-12 77.8 140 40.0
ECA248G0833 Erigeron canadensis HOM05D003241 ORTHO05D003812 1.7e-12 77.0 128 43.8
Lj3g0022607 Lotus japonicus HOM05D003241 ORTHO05D003812 2.9e-12 76.3 182 35.2
VMungo1127G0135 Vigna mungo HOM05D003241 ORTHO05D003812 2.9e-12 76.3 130 43.1
COL.COLO4_17461 Corchorus olitorius HOM05D003241 ORTHO05D003812 3.8e-12 75.9 113 43.4
Lalb_Chr03g0032261 Lupinus albus HOM05D003241 ORTHO05D003812 8.5e-12 74.7 117 41.9
Lalb_Chr19g0130441 Lupinus albus HOM05D003241 ORTHO05D003812 1.5e-11 73.9 117 41.9
Phvul.011G184800 Phaseolus vulgaris HOM05D003241 ORTHO05D003812 5.5e-11 72.0 110 42.7
Ca_13374_v3 Cicer arietinum L. HOM05D003241 ORTHO05D003812 1.6e-10 70.5 176 33.5
Glyma.07G220800 Glycine max HOM05D003241 ORTHO05D003812 1.6e-10 70.5 111 42.3
arahy.Tifrunner.gnm1.ann1.2W1DSR Arachis hypogaea HOM05D003241 ORTHO05D003812 2.1e-10 70.1 112 43.8
Sc22g0003580 Simmondsia chinensis HOM05D003241 ORTHO05D003812 2.1e-10 70.1 114 41.2
Medtr1g083910 Medicago truncatula HOM05D003241 ORTHO05D003812 3.6e-10 69.3 175 33.1
Psat0s3089g0040 Pisum sativum HOM05D003241 ORTHO05D003812 4.7e-10 68.9 175 31.4
Hund17599 Selenicereus undatus HOM05D003241 ORTHO05D003812 1.4e-09 67.4 118 38.1
Glyma.08G229600 Glycine max HOM05D003241 ORTHO05D003812 1.8e-09 67.0 174 33.3
ECA248G0244 Erigeron canadensis HOM05D003241 ORTHO05D003812 2.3e-09 66.6 101 42.6
arahy.Tifrunner.gnm1.ann1.61N80Q Arachis hypogaea HOM05D003241 ORTHO05D003812 4.0e-09 65.9 185 33.0
Pp3c15_10170 Physcomitrium patens HOM05D003241 ORTHO05D003812 5.2e-09 65.5 128 33.6
Mapoly0063s0006 Marchantia polymorpha HOM05D003241 ORTHO05D003812 2.6e-08 63.2 143 34.3
QL09p049206 Quercus lobata HOM05D003241 ORTHO05D003812 2.8e-07 59.7 71 47.9
RcHm_v2.0_Chr1g0362531 Rosa chinensis HOM05D003241 ORTHO05D025469 2.4e-06 56.6 41 70.7
unitig_749.g14191 Utricularia gibba HOM05D003241 ORTHO05D003812 5.4e-06 55.5 40 72.5
Lj2C819G2 Lonicera japonica HOM05D003241 ORTHO05D003812 7.0e-06 55.1 42 66.7
Medtr1g032020 Medicago truncatula HOM05D003241 ORTHO05D003812 9.1e-06 54.7 172 29.7
Medtr1g032350 Medicago truncatula HOM05D003241 ORTHO05D003812 9.1e-06 54.7 172 29.7


User provided reference genes

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