Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p059181 Quercus lobata HOM05D000399 ORTHO05D000304 3.3e-130 468.4 237 100.0
QL08p006916 Quercus lobata HOM05D000399 ORTHO05D000304 5.7e-58 228.4 123 92.7
QL09p024256 Quercus lobata HOM05D000399 ORTHO05D000304 5.7e-58 228.4 123 92.7
QL08p006924 Quercus lobata HOM05D000399 ORTHO05D000304 1.6e-52 210.3 114 92.1
QL09p024268 Quercus lobata HOM05D000399 ORTHO05D000304 1.6e-52 210.3 114 92.1
Haze_09717 Corylus avellana HOM05D000399 ORTHO05D000304 4.4e-42 175.6 123 71.5
Cfa020304 Carpinus fangiana HOM05D000399 ORTHO05D000304 9.8e-42 174.5 123 70.7
Thecc.07G031500 Theobroma cacao HOM05D000399 ORTHO05D000304 2.0e-39 166.8 123 70.7
COL.COLO4_09700 Corchorus olitorius HOM05D001348 ORTHO05D000304 1.3e-38 164.1 123 67.5
Duzib213G0551 Durio zibethinus HOM05D000399 ORTHO05D000304 1.7e-38 163.7 123 67.5
CiPaw.12G132200 Carya illinoinensis HOM05D000399 ORTHO05D000304 5.0e-38 162.2 123 65.9
Atru.chr2.3497 Acer truncatum HOM05D000399 ORTHO05D000304 2.5e-37 159.8 123 65.0
Potri.011G086700 Populus trichocarpa HOM05D000399 ORTHO05D000304 1.2e-36 157.5 125 68.0
QL08p008192 Quercus lobata HOM05D000399 ORTHO05D000304 1.6e-36 157.1 122 65.6
QL08p008239 Quercus lobata HOM05D000399 ORTHO05D000304 1.6e-36 157.1 122 68.9
Ciclev10008694m.g Citrus clementina HOM05D000399 ORTHO05D000304 1.1e-35 154.5 122 61.5
Manes.15G068000 Manihot esculenta HOM05D000399 ORTHO05D000304 3.1e-35 152.9 122 61.5
TWI39G0857 Tripterygium wilfordii HOM05D000399 ORTHO05D000304 3.4e-34 149.4 123 61.0
CANSAT01G2756 Cannabis sativa HOM05D000399 ORTHO05D000304 7.5e-34 148.3 124 61.3
Gohir.D05G373200 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.7e-33 146.0 123 61.0
Gorai.009G441900 Gossypium raimondii HOM05D000399 ORTHO05D000304 3.7e-33 146.0 123 61.0
MD03G1196200 Malus domestica HOM05D000399 ORTHO05D000304 1.1e-32 144.4 123 60.2
Gohir.A04G012700 Gossypium hirsutum HOM05D000399 ORTHO05D000304 2.4e-32 143.3 123 60.2
Prupe.4G219200 Prunus persica HOM05D000399 ORTHO05D000304 2.4e-32 143.3 123 58.5
ClCG10G005250 Citrullus lanatus HOM05D000399 ORTHO05D000304 3.2e-32 142.9 123 59.3
Cpa.g.sc12.267 Carica papaya HOM05D000399 ORTHO05D000304 4.1e-32 142.5 121 58.7
RcHm_v2.0_Chr5g0040931 Rosa chinensis HOM05D000399 ORTHO05D000304 5.4e-32 142.1 123 57.7
Dinv40784 Davidia involucrata HOM05D000399 ORTHO05D000304 1.6e-31 140.6 122 58.2
MD11G1212500 Malus domestica HOM05D000399 ORTHO05D000304 2.1e-31 140.2 123 58.5
Lalb_Chr04g0248271 Lupinus albus HOM05D000399 ORTHO05D000304 2.7e-31 139.8 122 58.2
Sed0023956 Sechium edule HOM05D000399 ORTHO05D000304 1.0e-30 137.9 124 58.9
CsaV3_4G013380 Cucumis sativus L. HOM05D000399 ORTHO05D000304 1.7e-30 137.1 123 57.7
Sed0015579 Sechium edule HOM05D000399 ORTHO05D000304 2.3e-30 136.7 126 59.5
CSS0028681 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 3.0e-30 136.3 121 57.0
QL08p008278 Quercus lobata HOM05D000399 ORTHO05D000304 3.0e-30 136.3 117 66.7
CsaV3_3G004960 Cucumis sativus L. HOM05D000399 ORTHO05D000304 3.9e-30 136.0 123 57.7
MELO3C014194.2 Cucumis melo HOM05D000399 ORTHO05D000304 5.1e-30 135.6 123 57.7
PGR083G1485 Punica granatum HOM05D000399 ORTHO05D000304 6.6e-30 135.2 123 58.5
Ca_06337_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 7.3e-29 131.7 125 54.4
LjContig00272g0000787 Lotus japonicus HOM05D000399 ORTHO05D000304 1.6e-28 130.6 123 55.3
Eucgr.F00717 Eucalyptus grandis HOM05D000399 ORTHO05D000304 8.1e-28 128.3 122 53.3
GSVIVG01037698001 Vitis vinifera HOM05D000399 ORTHO05D000304 1.8e-27 127.1 122 54.9
arahy.Tifrunner.gnm1.ann1.U657KI Arachis hypogaea HOM05D000399 ORTHO05D000304 2.3e-27 126.7 122 50.8
arahy.Tifrunner.gnm1.ann1.7RWM6D Arachis hypogaea HOM05D000399 ORTHO05D000304 4.0e-27 125.9 122 50.8
Actinidia35365 Actinidia chinensis HOM05D000399 ORTHO05D000304 8.9e-27 124.8 116 55.2
Psat2g012440 Pisum sativum HOM05D000399 ORTHO05D000304 8.9e-27 124.8 122 52.5
AUR62015826 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.2e-26 124.4 123 52.8
Medtr8g058930 Medicago truncatula HOM05D000399 ORTHO05D000304 1.2e-26 124.4 121 53.7
AUR62020392 Chenopodium quinoa HOM05D000399 ORTHO05D000304 2.0e-26 123.6 123 52.8
Glyma.14G021600 Glycine max HOM05D000399 ORTHO05D000304 2.0e-26 123.6 129 52.7
Hund23862 Selenicereus undatus HOM05D000399 ORTHO05D000304 2.0e-26 123.6 123 54.5
FAN11G3687 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.6e-26 123.2 121 51.2
QL01p000915 Quercus lobata HOM05D000399 ORTHO05D000304 2.6e-26 123.2 66 95.5
RcHm_v2.0_Chr5g0040941 Rosa chinensis HOM05D000399 ORTHO05D000304 2.6e-26 123.2 119 52.9
Nitab4.5_0005265g0030 Nicotiana tabacum HOM05D000399 ORTHO05D000304 4.4e-26 122.5 120 53.3
FAN16G0322 Fragaria x ananassa HOM05D000399 ORTHO05D000304 5.8e-26 122.1 121 51.2
Hund23225 Selenicereus undatus HOM05D000399 ORTHO05D000304 5.8e-26 122.1 117 56.4
EL10Ac4g07760 Beta vulgaris HOM05D000399 ORTHO05D000304 7.6e-26 121.7 123 52.0
MELO3C014193.2 Cucumis melo HOM05D000399 ORTHO05D000304 9.9e-26 121.3 123 53.7
TAR626G0927 Trochodendron aralioides HOM05D000399 ORTHO05D000304 1.7e-25 120.6 119 52.1
FAN25G1948 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.2e-25 120.2 121 49.6
Peaxi162Scf00339g00079 Petunia axillaris HOM05D000399 ORTHO05D000304 2.2e-25 120.2 121 51.2
Cc05_g14090 Coffea canephora HOM05D000399 ORTHO05D000304 4.9e-25 119.0 116 52.6
Medtr3g096700 Medicago truncatula HOM05D000399 ORTHO05D000304 4.9e-25 119.0 116 52.6
Prupe.4G219400 Prunus persica HOM05D000399 ORTHO05D000304 6.4e-25 118.6 109 56.0
Migut.M01731 Erythranthe guttata HOM05D000399 ORTHO05D000304 8.3e-25 118.2 121 54.5
TPR.G1198 Trifolium pratense HOM05D000399 ORTHO05D000304 1.9e-24 117.1 122 54.9
TPR.G10756 Trifolium pratense HOM05D000399 ORTHO05D000304 4.1e-24 115.9 122 53.3
TAR624G0323 Trochodendron aralioides HOM05D000399 ORTHO05D000304 5.4e-24 115.5 122 47.5
THA.LOC104817859 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 7.1e-24 115.2 121 50.4
Ah.03g148780 Amaranthus hybridus HOM05D000399 ORTHO05D000304 9.2e-24 114.8 117 52.1
Oeu005523.2 Olea europaea HOM05D000399 ORTHO05D000304 9.2e-24 114.8 122 50.0
SalBow8G1530 Salvia bowleyana HOM05D000399 ORTHO05D000304 1.2e-23 114.4 121 52.1
HanXRQChr17g0546441 Helianthus annuus HOM05D000399 ORTHO05D000304 2.7e-23 113.2 133 45.9
vmacro09696 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 2.7e-23 113.2 123 51.2
Sc07g0002840 Simmondsia chinensis HOM05D000399 ORTHO05D000304 6.0e-23 112.1 123 48.0
TPR.G17891 Trifolium pratense HOM05D001608 ORTHO05D002070 6.0e-23 112.1 118 53.4
CsaV3_3G004950 Cucumis sativus L. HOM05D000399 ORTHO05D000304 2.3e-22 110.2 123 51.2
MBI10_g29392_MAGBIO Magnolia biondii HOM05D000399 ORTHO05D000304 5.1e-22 109.0 122 48.4
Sopen12g007270 Solanum pennellii HOM05D000399 ORTHO05D000304 6.6e-22 108.6 120 49.2
CsaV3_4G013400 Cucumis sativus L. HOM05D000399 ORTHO05D000304 8.6e-22 108.2 142 47.9
Solyc12g014410.2 Solanum lycopersicum HOM05D000399 ORTHO05D000304 8.6e-22 108.2 120 48.3
PGSC0003DMG400012864 Solanum tuberosum HOM05D000399 ORTHO05D000304 3.3e-21 106.3 120 48.3
Aqoxy4G01902 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 5.6e-21 105.5 122 52.5
Nn1g03450 Nelumbo nucifera HOM05D000399 ORTHO05D000304 5.6e-21 105.5 118 48.3
MSTRG.6943 Avicennia marina HOM05D000399 ORTHO05D000304 7.3e-21 105.1 122 49.2
A05p28480 Brassica napus HOM05D000399 ORTHO05D000304 9.6e-21 104.8 145 44.1
Aa31LG8G7230 Aethionema arabicum HOM05D000399 ORTHO05D000304 1.2e-20 104.4 142 43.7
BraA05t21727Z Brassica rapa HOM05D000399 ORTHO05D000304 1.2e-20 104.4 125 46.4
CAN.G492.19 Capsicum annuum HOM05D000399 ORTHO05D000304 1.6e-20 104.0 121 47.9
SGA_v2.0_scaffold36G14385 Striga asiatica HOM05D000399 ORTHO05D000304 2.1e-20 103.6 135 48.1
C05p43940 Brassica napus HOM05D000399 ORTHO05D000304 3.6e-20 102.8 125 46.4
RhsimUnG0248400 Rhododendron simsii HOM05D000399 ORTHO05D000304 3.6e-20 102.8 127 45.7
BcaC05g28326 Brassica carinata HOM05D000399 ORTHO05D000304 6.2e-20 102.1 125 45.6
BolC5t33112H Brassica oleracea HOM05D000399 ORTHO05D000304 6.2e-20 102.1 125 45.6
Lsat_1_v5_gn_3_14921 Lactuca sativa HOM05D000399 ORTHO05D000304 8.1e-20 101.7 123 44.7
Lsat_1_v5_gn_7_114480 Lactuca sativa HOM05D000399 ORTHO05D000304 1.1e-19 101.3 121 42.1
Nitab4.5_0000981g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.1e-19 101.3 100 52.0
CAN.G952.2 Capsicum annuum HOM05D000399 ORTHO05D000304 1.8e-19 100.5 110 50.9
DCAR_016850 Daucus carota HOM05D000399 ORTHO05D000304 5.2e-19 99.0 123 44.7
BcaB06g26107 Brassica carinata HOM05D000399 ORTHO05D000304 6.8e-19 98.6 142 42.3
Sp3g18430 Schrenkiella parvula HOM05D000399 ORTHO05D000304 6.8e-19 98.6 142 40.8
AUR62015825 Chenopodium quinoa HOM05D000030 ORTHO05D000009 8.9e-19 98.2 119 48.7
EL10Ac4g07761 Beta vulgaris HOM05D000399 ORTHO05D000304 2.0e-18 97.1 123 48.8
Prupe.4G219600 Prunus persica HOM05D000399 ORTHO05D000304 2.6e-18 96.7 122 46.7
AUR62020393 Chenopodium quinoa HOM05D000399 ORTHO05D000304 4.4e-18 95.9 123 46.3
AL3G34140 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 1.7e-17 94.0 125 45.6
Carub.0003s2036 Capsella rubella HOM05D000399 ORTHO05D000304 1.7e-17 94.0 125 45.6
HanXRQChr17g0546431 Helianthus annuus HOM05D000399 ORTHO05D000304 1.7e-17 94.0 122 46.7
CDE11G1088 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 2.2e-17 93.6 119 44.5
Psat1g172680 Pisum sativum HOM05D000399 ORTHO05D000304 2.2e-17 93.6 120 43.3
PSO675G6810 Papaver somniferum HOM05D000399 ORTHO05D000304 4.9e-17 92.4 141 39.7
ECA248G1950 Erigeron canadensis HOM05D000399 ORTHO05D000304 8.4e-17 91.7 126 42.9
VMungo0647G2567 Vigna mungo HOM05D000399 ORTHO05D000304 8.4e-17 91.7 128 44.5
Thhalv10020929m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 1.1e-16 91.3 145 40.0
PSO541G6031 Papaver somniferum HOM05D000399 ORTHO05D000304 1.1e-16 91.3 141 39.0
AT3G20420 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 1.9e-16 90.5 124 43.5
Nitab4.5_0004927g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.9e-16 90.5 109 45.0
ECA236G2771 Erigeron canadensis HOM05D000399 ORTHO05D000304 2.4e-16 90.1 128 43.0
Phvul.008G269800 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 3.2e-16 89.7 123 43.1
Prupe.4G219500 Prunus persica HOM05D000399 ORTHO05D000304 3.2e-16 89.7 157 42.0
Prupe.4G219300 Prunus persica HOM05D000399 ORTHO05D000304 7.1e-16 88.6 122 48.4
TAR629G3020 Trochodendron aralioides HOM05D000399 ORTHO05D000304 9.3e-16 88.2 126 42.9
Lsat_1_v5_gn_7_109260 Lactuca sativa HOM05D000399 ORTHO05D000304 2.1e-15 87.0 105 40.0
Nitab4.5_0001393g0110 Nicotiana tabacum HOM05D000399 ORTHO05D000304 2.1e-15 87.0 137 40.1
Zm00001eb346320 Zea mays HOM05D000399 ORTHO05D000304 4.6e-15 85.9 118 44.9
Gohir.D08G034400 Gossypium hirsutum HOM05D000399 ORTHO05D000304 6.0e-15 85.5 84 48.8
HPP92_008857 Vanilla planifolia HOM05D000399 ORTHO05D000304 6.0e-15 85.5 141 39.0
CARHR096130 Cardamine hirsuta HOM05D000399 ORTHO05D000304 1.3e-14 84.3 124 40.3
Carub.0008s0304 Capsella rubella HOM05D000399 ORTHO05D000304 1.7e-14 84.0 117 41.0
HPP92_005298 Vanilla planifolia HOM05D000399 ORTHO05D000304 2.3e-14 83.6 144 35.4
Thecc.07G031400 Theobroma cacao HOM05D000399 ORTHO05D000304 5.1e-14 82.4 83 51.8
VMungo1309G1448 Vigna mungo HOM05D000399 ORTHO05D000304 8.7e-14 81.6 143 39.9
Gohir.A08G024000 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.3e-13 79.7 78 52.6
MD03G1196100 Malus domestica HOM05D000399 ORTHO05D000304 3.3e-13 79.7 112 44.6
Gorai.004G032400 Gossypium raimondii HOM05D000399 ORTHO05D000304 7.3e-13 78.6 79 48.1
vmacro17469 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 9.6e-13 78.2 174 32.8
Carub.0008s0303 Capsella rubella HOM05D000399 ORTHO05D000304 1.6e-12 77.4 77 49.4
DCAR_030339 Daucus carota HOM05D000399 ORTHO05D000304 2.1e-12 77.0 122 38.5
BcaC01g01692 Brassica carinata HOM05D000399 ORTHO05D000304 2.8e-12 76.6 103 42.7
Thhalv10000828m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 6.2e-12 75.5 78 51.3
AL3G47530 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 8.1e-12 75.1 120 38.3
AL8G14050 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 8.1e-12 75.1 73 47.9
MD11G1212400 Malus domestica HOM05D000399 ORTHO05D000304 1.4e-11 74.3 120 41.7
Gorai.004G032200 Gossypium raimondii HOM05D000399 ORTHO05D000304 9.0e-11 71.6 83 43.4
Rhsim13G0151000 Rhododendron simsii HOM05D000399 ORTHO05D000304 1.5e-10 70.9 115 36.5
Lj1C878T5 Lonicera japonica HOM05D000399 ORTHO05D000304 3.4e-10 69.7 65 58.5
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 4.4e-10 69.3 105 41.0
AL8G14040 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 7.6e-10 68.6 64 46.9
FAN25G2496 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.3e-09 67.8 68 50.0
CSS0004286 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 1.7e-09 67.4 64 53.1
Solyc10g006200.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 3.8e-09 66.2 114 37.7
AT5G45150 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 4.9e-09 65.9 64 45.3
Carub.0003s2962 Capsella rubella HOM05D000399 ORTHO05D000304 8.4e-09 65.1 121 31.4
Lj1A878T44 Lonicera japonica HOM05D000399 ORTHO05D000304 1.1e-08 64.7 67 43.3
FvH4_3g23250 Fragaria vesca HOM05D000399 ORTHO05D000304 1.4e-08 64.3 68 48.5
Sopen10g002160 Solanum pennellii HOM05D000399 ORTHO05D000304 1.4e-08 64.3 74 43.2
Thhalv10000947m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 4.6e-07 59.3 112 39.3
ATR0681G320 Amborella trichopoda HOM05D000399 ORTHO05D000304 7.9e-07 58.5 80 35.0
DCAR_030335 Daucus carota HOM05D000399 ORTHO05D000304 1.0e-06 58.2 67 43.3
COL.COLO4_09701 Corchorus olitorius HOM05D000399 ORTHO05D000304 1.3e-06 57.8 83 42.2
Eucgr.F00721 Eucalyptus grandis HOM05D000399 ORTHO05D000304 1.3e-06 57.8 73 41.1
Duzib268G0976 Durio zibethinus HOM05D000399 ORTHO05D000304 3.0e-06 56.6 83 43.4


User provided reference genes

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