Gene: Sopen12g007270

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen12g007270
  • Transcript Identifier Sopen12g007270.1
  • Gene Type Coding gene
  • Location Spenn-ch12 : 5782388-5784607 : positive

Gene Family Information

  • ID HOM05D000399
  • #Genes/#Species 1254/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen12g007270.1

Descriptions

  • Description double-stranded RNA binding / ribonuclease III. Required for 3 external transcribed spacer (ETS) cleavage of the pre-rRNA in vivo. Localizes in the nucleus and cytoplasm. | RNAse THREE-like protein 2 (RTL2) | FUNCTIONS IN: double-stranded RNA binding, ribonuclease III activity | INVOLVED IN: RNA processing | LOCATED IN: nucleus, cytoplasm | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding , Ribonuclease III | BEST Arabidopsis thaliana protein match is: RNAse THREE-like protein 3
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
InterProRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004525
IEA
InterProribonuclease III activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G20420
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT3G20420

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014720 Double-stranded RNA-binding domain
IPR000999 Ribonuclease III domain
IPR036389 Ribonuclease III, endonuclease domain superfamily
Mapman id Description
12.5.1.12 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.ribonuclease (RTL2)