Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p049332 Quercus lobata HOM05D002720 ORTHO05D002901 1.2e-39 166.0 80 100.0
QL09p012554 Quercus lobata HOM05D002720 ORTHO05D002901 8.0e-12 73.6 115 43.5
MELO3C026776.2 Cucumis melo HOM05D002720 ORTHO05D002901 1.8e-11 72.4 114 42.1
CsaV3_2G013070 Cucumis sativus L. HOM05D002720 ORTHO05D002901 1.8e-11 72.4 114 42.1
Sed0027773 Sechium edule HOM05D002720 ORTHO05D002901 1.8e-11 72.4 114 42.1
QL09p012558 Quercus lobata HOM05D002720 ORTHO05D002901 4.0e-11 71.2 115 42.6
Cpa.g.sc2.369 Carica papaya HOM05D002720 ORTHO05D002901 4.4e-10 67.8 115 39.1
Dinv44630 Davidia involucrata HOM05D002720 ORTHO05D002901 5.7e-10 67.4 115 37.4
GSVIVG01018108001 Vitis vinifera HOM05D002720 ORTHO05D002901 7.5e-10 67.0 114 39.5
Rhsim04G0190900 Rhododendron simsii HOM05D002720 ORTHO05D002901 9.7e-10 66.6 115 38.3
vmacro08407 Vaccinium macrocarpon HOM05D002720 ORTHO05D002901 2.8e-09 65.1 115 37.4
vmacro08613 Vaccinium macrocarpon HOM05D002720 ORTHO05D002901 2.8e-09 65.1 115 37.4
CSS0039978 Camellia sinensis var. sinensis HOM05D002720 ORTHO05D002901 3.7e-09 64.7 115 35.7
Hma1.2p1_0065F.1_g035630 Hydrangea macrophylla HOM05D002720 ORTHO05D002901 3.7e-09 64.7 114 37.7
Manes.07G037400 Manihot esculenta HOM05D002720 ORTHO05D002901 3.7e-09 64.7 115 37.4
Potri.008G161700 Populus trichocarpa HOM05D002720 ORTHO05D002901 4.8e-09 64.3 114 36.8
Potri.010G077300 Populus trichocarpa HOM05D002720 ORTHO05D002901 4.8e-09 64.3 114 36.8
Eucgr.H03254 Eucalyptus grandis HOM05D002720 ORTHO05D002901 6.3e-09 63.9 114 37.7
Duzib114G0436 Durio zibethinus HOM05D002720 ORTHO05D002901 8.2e-09 63.5 114 38.6
Thecc.10G145600 Theobroma cacao HOM05D002720 ORTHO05D002901 1.4e-08 62.8 114 36.8
Thecc.10G146200 Theobroma cacao HOM05D002720 ORTHO05D002901 1.4e-08 62.8 114 36.8
Duzib114G1034 Durio zibethinus HOM05D002720 ORTHO05D002901 1.8e-08 62.4 114 36.8
Lj6C656T10 Lonicera japonica HOM05D002720 ORTHO05D002901 1.8e-08 62.4 115 34.8
Eucgr.H03255 Eucalyptus grandis HOM05D002720 ORTHO05D002901 2.4e-08 62.0 114 36.8
Eucgr.L02850 Eucalyptus grandis HOM05D002720 ORTHO05D002901 2.4e-08 62.0 114 36.8
Gohir.A05G283100 Gossypium hirsutum HOM05D002720 ORTHO05D002901 2.4e-08 62.0 114 36.0
Actinidia40090 Actinidia chinensis HOM05D002720 ORTHO05D002901 4.1e-08 61.2 115 35.7
Thecc.10G145800 Theobroma cacao HOM05D002720 ORTHO05D002901 4.1e-08 61.2 114 36.0
Gohir.D05G284100 Gossypium hirsutum HOM05D002720 ORTHO05D002901 1.2e-07 59.7 114 35.1
Gorai.009G298700 Gossypium raimondii HOM05D002720 ORTHO05D002901 1.2e-07 59.7 114 35.1
Sopen02g019870 Solanum pennellii HOM05D002720 ORTHO05D002901 1.2e-07 59.7 94 35.1
TAR633G1171 Trochodendron aralioides HOM05D002720 ORTHO05D002901 1.2e-07 59.7 113 36.3
Atru.chr4.2236 Acer truncatum HOM05D002720 ORTHO05D002901 1.6e-07 59.3 115 34.8
Lalb_Chr06g0169331 Lupinus albus HOM05D002720 ORTHO05D002901 1.6e-07 59.3 119 33.6
MD16G1207700 Malus domestica HOM05D002720 ORTHO05D002901 1.6e-07 59.3 115 34.8
Prupe.1G030000 Prunus persica HOM05D002720 ORTHO05D002901 2.0e-07 58.9 115 35.7
Rhsim04G0192700 Rhododendron simsii HOM05D002720 ORTHO05D002901 2.0e-07 58.9 34 79.4
Solyc09g048970.3 Solanum lycopersicum HOM05D002720 ORTHO05D002901 2.0e-07 58.9 78 41.0
CSS0035657 Camellia sinensis var. sinensis HOM05D002720 ORTHO05D002901 2.7e-07 58.5 34 70.6
CiPaw.12G002900 Carya illinoinensis HOM05D002720 ORTHO05D002901 2.7e-07 58.5 114 36.8
Sopen06g014100 Solanum pennellii HOM05D002720 ORTHO05D002901 2.7e-07 58.5 113 32.7
VMungo0720G2991 Vigna mungo HOM05D002720 ORTHO05D002901 2.7e-07 58.5 113 36.3
Ciclev10006012m.g Citrus clementina HOM05D002720 ORTHO05D002901 3.5e-07 58.2 114 36.8
RcHm_v2.0_Chr4g0390271 Rosa chinensis HOM05D002720 ORTHO05D002901 3.5e-07 58.2 114 35.1
Sabra10G0031500 Salix brachista HOM05D002720 ORTHO05D002901 4.5e-07 57.8 114 35.1
SHI00593 Sapria himalayana HOM05D002720 ORTHO05D002901 4.5e-07 57.8 114 33.3
Phvul.L002059 Phaseolus vulgaris HOM05D002720 ORTHO05D002901 5.9e-07 57.4 114 36.0
Nitab4.5_0000695g0070 Nicotiana tabacum HOM05D002720 ORTHO05D002901 7.7e-07 57.0 115 30.4
Nitab4.5_0006814g0010 Nicotiana tabacum HOM05D002720 ORTHO05D002901 7.7e-07 57.0 115 30.4
Solyc03g118380.3 Solanum lycopersicum HOM05D002720 ORTHO05D002901 7.7e-07 57.0 115 31.3
Sopen03g037280 Solanum pennellii HOM05D002720 ORTHO05D002901 7.7e-07 57.0 115 31.3
Glyma.20G204700 Glycine max HOM05D002720 ORTHO05D002901 1.0e-06 56.6 114 35.1
Solyc06g033895.1 Solanum lycopersicum HOM05D002720 ORTHO05D002901 1.3e-06 56.2 114 31.6
Sopen08g015260 Solanum pennellii HOM05D002720 ORTHO05D002901 1.3e-06 56.2 73 39.7
PGR004G0769 Punica granatum HOM05D002720 ORTHO05D002901 1.7e-06 55.8 114 34.2
SHI27528 Sapria himalayana HOM05D002720 ORTHO05D002901 1.7e-06 55.8 114 32.5
PGSC0003DMG400014251 Solanum tuberosum HOM05D002720 ORTHO05D002901 1.7e-06 55.8 115 30.4
CAN.G650.21 Capsicum annuum HOM05D002720 ORTHO05D002901 2.2e-06 55.5 115 30.4
FvH4_4g12050 Fragaria vesca HOM05D002720 ORTHO05D002901 2.2e-06 55.5 114 35.1
FAN12G2103 Fragaria x ananassa HOM05D002720 ORTHO05D002901 2.2e-06 55.5 114 35.1
FAN12G3038 Fragaria x ananassa HOM05D002720 ORTHO05D002901 2.2e-06 55.5 114 35.1
Lalb_Chr16g0384831 Lupinus albus HOM05D002720 ORTHO05D002901 2.2e-06 55.5 114 32.5
PGSC0003DMG400008310 Solanum tuberosum HOM05D002720 ORTHO05D002901 2.2e-06 55.5 114 30.7
Aa31LG9G2670 Aethionema arabicum HOM05D002720 ORTHO05D002901 2.9e-06 55.1 115 31.3
Solyc06g033900.3 Solanum lycopersicum HOM05D002720 ORTHO05D002901 2.9e-06 55.1 33 66.7
Sopen06g014110 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-06 55.1 33 66.7
FAN07G0794 Fragaria x ananassa HOM05D002720 ORTHO05D002901 3.8e-06 54.7 114 35.1
Aqoxy5G00329 Aquilegia oxysepala HOM05D002720 ORTHO05D002901 5.0e-06 54.3 114 33.3
FAN17G1273 Fragaria x ananassa HOM05D002720 ORTHO05D002901 5.0e-06 54.3 114 35.1
Oeu030668.1 Olea europaea HOM05D002720 ORTHO05D002901 5.0e-06 54.3 114 34.2
TWI73G0137 Tripterygium wilfordii HOM05D002720 ORTHO05D002901 5.0e-06 54.3 114 32.5
Aqoxy3G01073 Aquilegia oxysepala HOM05D002720 ORTHO05D002901 6.5e-06 53.9 114 32.5
BcaB04g18254 Brassica carinata HOM05D002720 ORTHO05D002901 6.5e-06 53.9 115 28.7
BcaC07g37842 Brassica carinata HOM05D002720 ORTHO05D002901 6.5e-06 53.9 115 28.7
A08p11370 Brassica napus HOM05D002720 ORTHO05D002901 6.5e-06 53.9 115 28.7
BolC8t48229H Brassica oleracea HOM05D002720 ORTHO05D002901 6.5e-06 53.9 115 28.7
BraA08t33130Z Brassica rapa HOM05D002720 ORTHO05D002901 6.5e-06 53.9 115 28.7
AUR62019525 Chenopodium quinoa HOM05D002720 ORTHO05D002901 6.5e-06 53.9 114 33.3
AUR62036114 Chenopodium quinoa HOM05D002720 ORTHO05D002901 6.5e-06 53.9 114 33.3
PGSC0003DMG400027588 Solanum tuberosum HOM05D002720 ORTHO05D002901 6.5e-06 53.9 115 29.6
MSTRG.4098 Avicennia marina HOM05D002720 ORTHO05D002901 8.5e-06 53.5 114 33.3
Cfa018743 Carpinus fangiana HOM05D002720 ORTHO05D002901 8.5e-06 53.5 118 35.6
Haze_07193 Corylus avellana HOM05D002720 ORTHO05D002901 8.5e-06 53.5 118 35.6
Nn3g19523 Nelumbo nucifera HOM05D002720 ORTHO05D002901 8.5e-06 53.5 114 33.3
Prupe.1G029900 Prunus persica HOM05D002720 ORTHO05D002901 8.5e-06 53.5 115 31.3


User provided reference genes

Program Settings