Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 1.0e-171 606.7 305 100.0
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 1.0e-171 606.7 305 100.0
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 1.2e-111 407.1 307 70.4
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.5e-111 406.8 305 69.5
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 5.7e-111 404.8 305 69.5
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 9.8e-111 404.1 305 70.2
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.3e-110 403.7 305 69.5
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 3.7e-110 402.1 305 69.5
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 8.3e-110 401.0 305 69.5
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 1.6e-108 396.7 307 69.4
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 2.7e-108 396.0 305 68.2
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 3.9e-107 392.1 305 66.6
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 6.6e-107 391.3 305 68.2
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 6.6e-107 391.3 307 67.1
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 8.6e-107 391.0 305 66.9
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 1.9e-106 389.8 307 66.1
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 3.3e-106 389.0 368 61.1
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 4.3e-106 388.7 305 66.6
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 2.1e-105 386.3 305 65.6
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 3.6e-105 385.6 306 66.7
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 4.7e-105 385.2 307 67.4
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 6.2e-105 384.8 364 59.6
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 6.2e-105 384.8 305 66.9
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 1.0e-104 384.0 305 65.9
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 1.0e-104 384.0 307 67.4
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 1.4e-104 383.6 304 65.1
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 5.2e-104 381.7 307 66.4
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 5.2e-104 381.7 307 66.4
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 6.8e-104 381.3 305 64.6
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 8.9e-104 380.9 304 65.1
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 8.9e-104 380.9 305 65.2
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 1.2e-103 380.6 306 65.0
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 2.0e-103 379.8 306 65.0
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 4.4e-103 378.6 304 65.5
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 4.4e-103 378.6 305 64.3
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 4.4e-103 378.6 307 66.1
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 5.8e-103 378.3 306 65.4
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 5.8e-103 378.3 307 64.5
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 7.5e-103 377.9 305 64.3
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 7.5e-103 377.9 323 64.1
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 1.3e-102 377.1 346 60.4
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.3e-102 377.1 305 64.9
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.3e-102 377.1 305 64.9
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 1.7e-102 376.7 305 64.6
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 2.9e-102 375.9 306 65.0
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 3.7e-102 375.6 304 65.5
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 6.4e-102 374.8 306 65.0
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 8.3e-102 374.4 308 64.9
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 1.1e-101 374.0 308 64.9
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 1.4e-101 373.6 306 65.0
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 1.4e-101 373.6 306 65.0
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 1.4e-101 373.6 300 63.0
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 2.4e-101 372.9 305 64.6
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 2.4e-101 372.9 304 64.8
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 3.2e-101 372.5 307 63.8
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 7.0e-101 371.3 306 64.1
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 9.2e-101 370.9 306 64.7
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 1.2e-100 370.5 306 64.4
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 1.2e-100 370.5 301 63.8
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 1.6e-100 370.2 304 63.5
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 2.0e-100 369.8 304 63.5
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 3.5e-100 369.0 306 63.4
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 7.8e-100 367.9 305 63.9
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 1.0e-99 367.5 305 63.6
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 1.0e-99 367.5 318 61.6
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 1.0e-99 367.5 307 63.5
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 1.3e-99 367.1 306 64.1
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 1.7e-99 366.7 306 64.1
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 1.7e-99 366.7 304 63.8
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 1.7e-99 366.7 306 63.4
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 2.3e-99 366.3 304 63.5
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 2.3e-99 366.3 306 62.7
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 3.9e-99 365.5 317 61.5
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 5.0e-99 365.2 305 64.6
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 6.6e-99 364.8 305 63.6
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 8.6e-99 364.4 305 62.6
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 8.6e-99 364.4 305 63.0
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 1.5e-98 363.6 305 62.3
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.5e-98 362.8 305 63.0
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 3.3e-98 362.5 305 62.3
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 3.3e-98 362.5 305 62.3
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 1.6e-97 360.1 307 64.2
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 1.1e-96 357.5 231 77.9
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 1.1e-96 357.5 305 61.0
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 1.4e-96 357.1 289 63.3
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 6.8e-96 354.8 307 62.5
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 2.6e-95 352.8 309 58.6
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 2.6e-95 352.8 305 62.0
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 2.6e-95 352.8 308 61.4
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 3.4e-95 352.4 290 65.2
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 4.4e-95 352.1 235 74.5
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 4.4e-95 352.1 307 60.9
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 5.8e-95 351.7 305 60.7
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 7.5e-95 351.3 309 60.8
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 9.8e-95 350.9 307 63.5
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 1.3e-94 350.5 305 60.3
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 2.2e-94 349.7 307 60.6
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 2.2e-94 349.7 307 60.6
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 6.4e-94 348.2 305 61.6
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 4.1e-93 345.5 305 60.0
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 9.2e-93 344.4 306 60.5
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 9.2e-93 344.4 306 61.4
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 1.2e-92 344.0 305 60.0
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 2.1e-92 343.2 308 60.1
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 2.1e-92 343.2 306 60.5
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 2.7e-92 342.8 308 59.1
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 3.5e-92 342.4 262 68.3
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 1.0e-91 340.9 307 62.5
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 3.0e-91 339.3 321 58.3
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 1.1e-90 337.4 231 72.3
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 3.3e-90 335.9 232 72.8
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 2.1e-89 333.2 307 61.9
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 8.1e-89 331.3 305 59.0
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 1.4e-88 330.5 304 58.9
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 2.3e-88 329.7 304 59.2
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 1.3e-86 323.9 233 69.1
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 1.9e-85 320.1 234 70.9
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 1.2e-84 317.4 307 56.4
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 4.6e-84 315.5 308 56.8
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 3.0e-83 312.8 291 59.8
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 3.0e-83 312.8 310 57.7
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 2.5e-82 309.7 366 50.8
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 9.6e-82 307.8 350 50.9
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 9.6e-82 307.8 269 60.2
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 2.8e-81 306.2 308 55.5
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 6.2e-81 305.1 306 56.2
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 2.4e-80 303.1 308 55.2
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 8.4e-78 294.7 236 66.9
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 1.2e-76 290.8 265 59.2
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 2.7e-76 289.7 368 49.2
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 1.3e-75 287.3 295 55.6
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 1.1e-74 284.3 313 52.4
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 8.1e-73 278.1 302 51.7
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 5.4e-69 265.4 305 51.5
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 2.3e-67 260.0 193 69.4
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 2.3e-67 260.0 302 48.7
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 1.5e-66 257.3 273 52.7
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 2.5e-66 256.5 181 72.4
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 1.3e-65 254.2 234 59.4
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 2.4e-64 250.0 201 65.2
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 6.0e-60 235.3 234 55.6
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 5.1e-59 232.3 302 47.4
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 7.4e-58 228.4 261 50.2
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 3.7e-57 226.1 310 45.2
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 2.4e-56 223.4 208 57.7
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 5.3e-56 222.2 295 45.8
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 1.2e-55 221.1 295 45.8
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 3.4e-55 219.5 208 55.8
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 4.9e-54 215.7 162 67.3
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 1.9e-53 213.8 305 44.9
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 2.7e-52 209.9 197 56.9
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 7.4e-50 201.8 210 53.8
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 1.6e-49 200.7 189 59.8
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 1.0e-46 191.4 126 72.2
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 1.9e-45 187.2 183 54.6
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 2.1e-44 183.7 246 45.9
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 6.1e-44 182.2 175 55.4
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.5e-42 177.6 207 49.8
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 3.1e-40 169.9 165 57.6
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 9.1e-40 168.3 295 40.0
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 8.5e-38 161.8 139 61.2
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 1.1e-37 161.4 133 63.2
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 4.6e-36 156.0 186 50.0
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.0e-35 154.8 160 53.1
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 5.1e-35 152.5 250 42.0
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 8.8e-35 151.8 182 46.2
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 2.2e-30 137.1 162 46.3
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 1.4e-27 127.9 69 87.0
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 5.7e-26 122.5 73 80.8
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 8.2e-25 118.6 306 33.0
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 1.8e-24 117.5 148 51.4
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 5.0e-22 109.4 74 71.6
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 6.1e-20 102.4 73 68.5
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 1.3e-17 94.7 121 48.8
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 1.4e-16 91.3 74 62.2
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 6.8e-11 72.4 320 26.6
CSS0016932 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 5.4e-08 62.8 42 71.4
SEGI_06119 Sequoiadendron giganteum HOM05D001715 ORTHO05D000497 6.5e-06 55.8 42 69.0


User provided reference genes

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