Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p094432 Quercus lobata HOM05D000839 ORTHO05D000664 9.9e-52 206.5 101 100.0
QL04p094449 Quercus lobata HOM05D000839 ORTHO05D000664 6.9e-21 104.0 53 92.5
QL04p094504 Quercus lobata HOM05D000839 ORTHO05D000664 6.9e-21 104.0 53 92.5
QL04p094291 Quercus lobata HOM05D000839 ORTHO05D000664 1.9e-18 95.9 51 88.2
QL09p028467 Quercus lobata HOM05D000839 ORTHO05D000664 1.6e-17 92.8 49 89.8
QL04p094361 Quercus lobata HOM05D000839 ORTHO05D000664 2.7e-17 92.0 51 84.3
QL04p094514 Quercus lobata HOM05D000839 ORTHO05D000664 1.0e-16 90.1 53 81.1
Haze_18502 Corylus avellana HOM05D000839 ORTHO05D000664 5.1e-16 87.8 54 81.5
Haze_02552 Corylus avellana HOM05D000839 ORTHO05D000664 1.1e-15 86.7 61 67.2
Haze_18507 Corylus avellana HOM05D000839 ORTHO05D000664 5.7e-15 84.3 53 75.5
Cfa019765 Carpinus fangiana HOM05D000839 ORTHO05D000664 7.4e-15 84.0 51 76.5
CiPaw.15G113200 Carya illinoinensis HOM05D000839 ORTHO05D000664 6.3e-14 80.9 48 77.1
Haze_18506 Corylus avellana HOM05D000839 ORTHO05D000664 6.3e-14 80.9 53 73.6
QL04p094311 Quercus lobata HOM05D000839 ORTHO05D000664 8.2e-14 80.5 54 75.9
CiPaw.16G079600 Carya illinoinensis HOM05D000839 ORTHO05D000664 4.1e-13 78.2 53 66.0
CiPaw.16G079900 Carya illinoinensis HOM05D000839 ORTHO05D000664 4.1e-13 78.2 53 66.0
Nn7g38382 Nelumbo nucifera HOM05D000839 ORTHO05D000664 4.1e-13 78.2 49 73.5
CiPaw.16G079500 Carya illinoinensis HOM05D000839 ORTHO05D000664 1.6e-12 76.3 53 64.2
FAN21G2673 Fragaria x ananassa HOM05D000839 ORTHO05D000664 7.7e-12 73.9 50 70.0
HPP92_012433 Vanilla planifolia HOM05D000839 ORTHO05D000664 1.3e-11 73.2 54 64.8
HPP92_012434 Vanilla planifolia HOM05D000839 ORTHO05D000664 2.2e-11 72.4 54 63.0
FvH4_3g14010 Fragaria vesca HOM05D000839 ORTHO05D000664 3.8e-11 71.6 50 68.0
FAN11G4010 Fragaria x ananassa HOM05D000839 ORTHO05D000664 3.8e-11 71.6 50 68.0
FAN25G2500 Fragaria x ananassa HOM05D000839 ORTHO05D000664 3.8e-11 71.6 50 68.0
RcHm_v2.0_Chr5g0023311 Rosa chinensis HOM05D000839 ORTHO05D000664 3.8e-11 71.6 50 68.0
RcHm_v2.0_Chr5g0023241 Rosa chinensis HOM05D000839 ORTHO05D000664 5.0e-11 71.2 50 68.0
TAR627G0676 Trochodendron aralioides HOM05D000839 ORTHO05D000664 5.0e-11 71.2 47 72.3
Os07g0561800 Oryza sativa ssp. japonica HOM05D000839 ORTHO05D000664 8.5e-11 70.5 58 58.6
Aqoxy2G04018 Aquilegia oxysepala HOM05D000839 ORTHO05D000664 1.1e-10 70.1 49 63.3
PSO339G2562 Papaver somniferum HOM05D000839 ORTHO05D000664 1.5e-10 69.7 64 57.8
Sabra10G0134300 Salix brachista HOM05D000839 ORTHO05D000664 1.9e-10 69.3 50 62.0
Manes.16G046838 Manihot esculenta HOM05D000839 ORTHO05D000664 2.5e-10 68.9 51 60.8
Oeu029452.1 Olea europaea HOM05D000839 ORTHO05D000664 3.2e-10 68.6 50 62.0
Eucgr.F04368 Eucalyptus grandis HOM05D000839 ORTHO05D000664 4.2e-10 68.2 55 63.6
Atru.chr1.49 Acer truncatum HOM05D000839 ORTHO05D000664 5.5e-10 67.8 53 60.4
TWI59G0373 Tripterygium wilfordii HOM05D000839 ORTHO05D000664 5.5e-10 67.8 50 64.0
PSO210G2324 Papaver somniferum HOM05D000839 ORTHO05D000664 7.2e-10 67.4 54 63.0
Prupe.4G127100 Prunus persica HOM05D000839 ORTHO05D000664 7.2e-10 67.4 54 61.1
Zm00001eb324230 Zea mays HOM05D000839 ORTHO05D000664 7.2e-10 67.4 53 60.4
Nn2g11250 Nelumbo nucifera HOM05D000839 ORTHO05D000664 9.4e-10 67.0 45 71.1
CANSAT56G3009 Cannabis sativa HOM05D000839 ORTHO05D000664 1.2e-09 66.6 51 62.7
FAN16G3593 Fragaria x ananassa HOM05D001289 ORTHO05D000664 1.2e-09 66.6 50 64.0
MD05G1238900 Malus domestica HOM05D000839 ORTHO05D000664 1.6e-09 66.2 54 61.1
Rhsim01G0077300 Rhododendron simsii HOM05D000839 ORTHO05D000664 2.1e-09 65.9 49 61.2
Duzib213G0165 Durio zibethinus HOM05D000839 ORTHO05D000664 3.6e-09 65.1 51 62.7
AUR62007462 Chenopodium quinoa HOM05D000839 ORTHO05D000664 4.7e-09 64.7 50 62.0
AUR62039921 Chenopodium quinoa HOM05D000839 ORTHO05D000664 4.7e-09 64.7 50 62.0
Ciclev10004786m.g Citrus clementina HOM05D000839 ORTHO05D000664 4.7e-09 64.7 53 58.5
SalBow8G2429 Salvia bowleyana HOM05D000839 ORTHO05D000664 4.7e-09 64.7 58 53.4
SalBow8G3713 Salvia bowleyana HOM05D000839 ORTHO05D000664 4.7e-09 64.7 58 53.4
vmacro20657 Vaccinium macrocarpon HOM05D000839 ORTHO05D000664 4.7e-09 64.7 49 57.1
Atru.chr1.48 Acer truncatum HOM05D000839 ORTHO05D000664 6.1e-09 64.3 49 59.2
CDE12G0381 Ceratophyllum demersum HOM05D000839 ORTHO05D000664 6.1e-09 64.3 53 54.7
COL.COLO4_24984 Corchorus olitorius HOM05D000839 ORTHO05D000664 6.1e-09 64.3 47 59.6
Rhsim01G0077200 Rhododendron simsii HOM05D000839 ORTHO05D000664 6.1e-09 64.3 49 61.2
CARHR016860 Cardamine hirsuta HOM05D000839 ORTHO05D000664 8.0e-09 63.9 50 62.0
Ciclev10006697m.g Citrus clementina HOM05D000839 ORTHO05D000664 8.0e-09 63.9 49 59.2
MD10G1217000 Malus domestica HOM05D000839 ORTHO05D000664 8.0e-09 63.9 50 64.0
Peaxi162Scf00423g00074 Petunia axillaris HOM05D000839 ORTHO05D000664 8.0e-09 63.9 52 61.5
PGSC0003DMG400010563 Solanum tuberosum HOM05D000839 ORTHO05D000664 8.0e-09 63.9 49 61.2
PGSC0003DMG400015764 Solanum tuberosum HOM05D000839 ORTHO05D000664 8.0e-09 63.9 49 61.2
EL10Ac5g12996 Beta vulgaris HOM05D000839 ORTHO05D000664 1.0e-08 63.5 50 62.0
CANSAT56G3266 Cannabis sativa HOM05D000839 ORTHO05D000664 1.0e-08 63.5 49 61.2
Potri.010G174400 Populus trichocarpa HOM05D000839 ORTHO05D000664 1.0e-08 63.5 50 58.0
Solyc05g053860.4 Solanum lycopersicum HOM05D000839 ORTHO05D000664 1.0e-08 63.5 48 62.5
Sopen05g032330 Solanum pennellii HOM05D000839 ORTHO05D000664 1.0e-08 63.5 48 62.5
CAN.G1310.10 Capsicum annuum HOM05D000839 ORTHO05D000664 1.4e-08 63.2 49 61.2
CDE01G0439 Ceratophyllum demersum HOM05D000839 ORTHO05D000664 1.4e-08 63.2 53 54.7
Phvul.009G189000 Phaseolus vulgaris HOM05D000839 ORTHO05D000664 1.4e-08 63.2 53 58.5
Carub.0002s2622 Capsella rubella HOM05D000839 ORTHO05D000664 1.8e-08 62.8 56 57.1
Lalb_Chr01g0007241 Lupinus albus HOM05D000839 ORTHO05D000664 1.8e-08 62.8 49 63.3
Lj3g0012294 Lotus japonicus HOM05D000839 ORTHO05D000664 2.3e-08 62.4 50 60.0
SGA_v2.0_scaffold239G44008 Striga asiatica HOM05D000839 ORTHO05D000664 2.3e-08 62.4 61 55.7
Atru.chr1.51 Acer truncatum HOM05D000839 ORTHO05D000664 3.0e-08 62.0 47 61.7
BcaB05g25194 Brassica carinata HOM05D000839 ORTHO05D000664 3.0e-08 62.0 59 50.8
Oeu019748.1 Olea europaea HOM05D000839 ORTHO05D000664 3.0e-08 62.0 50 56.0
AT1G16390 Arabidopsis thaliana HOM05D000839 ORTHO05D000664 4.0e-08 61.6 55 54.5
BcaC03g15886 Brassica carinata HOM05D000839 ORTHO05D000664 4.0e-08 61.6 61 54.1
A02p22770 Brassica napus HOM05D000839 ORTHO05D000664 4.0e-08 61.6 61 54.1
C02p36560 Brassica napus HOM05D000839 ORTHO05D000664 4.0e-08 61.6 61 54.1
C08p17470 Brassica napus HOM05D000839 ORTHO05D000664 4.0e-08 61.6 59 59.3
BolC2t09654H Brassica oleracea HOM05D000839 ORTHO05D000664 4.0e-08 61.6 61 54.1
BolC8t49372H Brassica oleracea HOM05D000839 ORTHO05D000664 4.0e-08 61.6 59 59.3
BraA02t07280Z Brassica rapa HOM05D000839 ORTHO05D000664 4.0e-08 61.6 61 54.1
Carub.0001s1613 Capsella rubella HOM05D000839 ORTHO05D000664 4.0e-08 61.6 49 61.2
CiPaw.16G079700 Carya illinoinensis HOM05D000839 ORTHO05D000664 4.0e-08 61.6 39 66.7
Glyma.02G149300 Glycine max HOM05D000839 ORTHO05D000664 4.0e-08 61.6 47 61.7
Glyma.04G171800 Glycine max HOM05D000839 ORTHO05D000664 4.0e-08 61.6 51 58.8
Gohir.D13G130000 Gossypium hirsutum HOM05D000839 ORTHO05D000664 4.0e-08 61.6 49 63.3
Gorai.013G146100 Gossypium raimondii HOM05D000839 ORTHO05D000664 4.0e-08 61.6 49 63.3
Aa31LG7G940 Aethionema arabicum HOM05D000839 ORTHO05D000664 5.2e-08 61.2 49 61.2
Prupe.4G127200 Prunus persica HOM05D000839 ORTHO05D000664 5.2e-08 61.2 52 59.6
arahy.Tifrunner.gnm1.ann1.ZGM5A8 Arachis hypogaea HOM05D000839 ORTHO05D000664 6.7e-08 60.8 51 56.9
PGR044G0683 Punica granatum HOM05D000839 ORTHO05D000664 6.7e-08 60.8 48 64.6
Sp5g34420 Schrenkiella parvula HOM05D000839 ORTHO05D000664 6.7e-08 60.8 56 53.6
BcaC08g47496 Brassica carinata HOM05D000839 ORTHO05D000664 8.8e-08 60.5 56 53.6
A07p44440 Brassica napus HOM05D000839 ORTHO05D000664 8.8e-08 60.5 56 53.6
C06p53250 Brassica napus HOM05D000839 ORTHO05D000664 8.8e-08 60.5 56 53.6
BolC6t40343H Brassica oleracea HOM05D000839 ORTHO05D000664 8.8e-08 60.5 56 53.6
PSO170G6772 Papaver somniferum HOM05D000839 ORTHO05D000664 8.8e-08 60.5 52 59.6
THA.LOC104808144 Tarenaya hassleriana HOM05D000839 ORTHO05D000664 8.8e-08 60.5 62 50.0
Ah.12g056360 Amaranthus hybridus HOM05D000839 ORTHO05D000664 1.1e-07 60.1 85 42.4
ATR1000G002 Amborella trichopoda HOM05D000839 ORTHO05D000664 1.1e-07 60.1 47 59.6
Cc08_g05460 Coffea canephora HOM05D000839 ORTHO05D000664 1.1e-07 60.1 48 58.3
HPP92_017543 Vanilla planifolia HOM05D000839 ORTHO05D000664 1.1e-07 60.1 55 58.2
VMungo1309G2712 Vigna mungo HOM05D000839 ORTHO05D000664 1.1e-07 60.1 53 58.5
AL1G28510 Arabidopsis lyrata HOM05D000839 ORTHO05D000664 1.5e-07 59.7 55 54.5
BcaB02g08678 Brassica carinata HOM05D000839 ORTHO05D000664 1.5e-07 59.7 56 53.6
CSS0006227 Camellia sinensis var. sinensis HOM05D000839 ORTHO05D000664 1.5e-07 59.7 48 62.5
MBI18_g30532_MAGBIO Magnolia biondii HOM05D000839 ORTHO05D000664 1.5e-07 59.7 49 59.2
Oeu019745.1 Olea europaea HOM05D000839 ORTHO05D000664 1.5e-07 59.7 51 51.0
Peaxi162Scf01366g00023 Petunia axillaris HOM05D000839 ORTHO05D000664 1.5e-07 59.7 51 54.9
Potri.016G039000 Populus trichocarpa HOM05D000839 ORTHO05D000664 1.5e-07 59.7 53 54.7
BcaB03g13040 Brassica carinata HOM05D000839 ORTHO05D000664 2.0e-07 59.3 50 62.0
CSS0035604 Camellia sinensis var. sinensis HOM05D000839 ORTHO05D000664 2.0e-07 59.3 48 62.5
PSO210G0291 Papaver somniferum HOM05D000839 ORTHO05D000664 2.0e-07 59.3 53 56.6
TPR.G9401 Trifolium pratense HOM05D000839 ORTHO05D000664 2.0e-07 59.3 51 58.8
A08p31350 Brassica napus HOM05D000839 ORTHO05D000664 2.6e-07 58.9 59 57.6
BraA08t35058Z Brassica rapa HOM05D000839 ORTHO05D000664 2.6e-07 58.9 59 57.6
Thhalv10007377m.g Eutrema salsugineum HOM05D000839 ORTHO05D000664 2.6e-07 58.9 50 58.0
Nitab4.5_0004585g0080 Nicotiana tabacum HOM05D000839 ORTHO05D000664 2.6e-07 58.9 51 56.9
Peaxi162Scf00286g00441 Petunia axillaris HOM05D000839 ORTHO05D000664 2.6e-07 58.9 49 61.2
Thecc.07G191500 Theobroma cacao HOM05D000839 ORTHO05D000664 2.6e-07 58.9 47 57.4
Ah.02g117130 Amaranthus hybridus HOM05D000839 ORTHO05D000664 3.3e-07 58.5 50 58.0
MBI18_g27536_MAGBIO Magnolia biondii HOM05D000839 ORTHO05D000664 3.3e-07 58.5 49 59.2
Thecc.07G192300 Theobroma cacao HOM05D000839 ORTHO05D000664 3.3e-07 58.5 49 59.2
HPP92_017569 Vanilla planifolia HOM05D000839 ORTHO05D000664 3.3e-07 58.5 55 56.4
Thhalv10018401m.g Eutrema salsugineum HOM05D000839 ORTHO05D000664 4.4e-07 58.2 51 56.9
AT1G79360 Arabidopsis thaliana HOM05D000839 ORTHO05D000664 5.7e-07 57.8 54 53.7
CARHR073020 Cardamine hirsuta HOM05D000839 ORTHO05D000664 5.7e-07 57.8 56 51.8
Glyma.06G192100 Glycine max HOM05D000839 ORTHO05D000664 5.7e-07 57.8 51 54.9
Medtr8g447340 Medicago truncatula HOM05D000839 ORTHO05D000664 5.7e-07 57.8 51 56.9
Psat4g170600 Pisum sativum HOM05D000839 ORTHO05D000664 5.7e-07 57.8 51 58.8
CSS0001674 Camellia sinensis var. sinensis HOM05D000839 ORTHO05D000664 7.5e-07 57.4 51 58.8
Oeu019742.1 Olea europaea HOM05D000839 ORTHO05D000664 7.5e-07 57.4 47 57.4
RcHm_v2.0_Chr5g0023291 Rosa chinensis HOM05D000839 ORTHO05D000664 7.5e-07 57.4 53 58.5
Sopen12g008160 Solanum pennellii HOM05D000839 ORTHO05D000664 7.5e-07 57.4 58 51.7
SGA_v2.0_scaffold472G52095 Striga asiatica HOM05D000839 ORTHO05D000664 7.5e-07 57.4 48 60.4
ATR0763G086 Amborella trichopoda HOM05D000839 ORTHO05D000664 9.7e-07 57.0 47 55.3
Eucgr.F04367 Eucalyptus grandis HOM05D000839 ORTHO05D000664 9.7e-07 57.0 32 78.1
Peaxi162Scf01366g00022 Petunia axillaris HOM05D000839 ORTHO05D000664 9.7e-07 57.0 49 59.2
PGSC0003DMG400036598 Solanum tuberosum HOM05D000839 ORTHO05D000664 9.7e-07 57.0 51 56.9
Atru.chr12.700 Acer truncatum HOM05D000839 ORTHO05D000664 1.3e-06 56.6 49 57.1
QL04p094121 Quercus lobata HOM05D000839 ORTHO05D000664 1.3e-06 56.6 68 42.6
vmacro23138 Vaccinium macrocarpon HOM05D000839 ORTHO05D000664 1.3e-06 56.6 49 57.1
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 1.7e-06 56.2 55 50.9
Os07g0562400 Oryza sativa ssp. japonica HOM05D000839 ORTHO05D000664 1.7e-06 56.2 47 57.4
THA.LOC104812388 Tarenaya hassleriana HOM05D000839 ORTHO05D000664 1.7e-06 56.2 62 53.2
Ca_29682_v3 Cicer arietinum L. HOM05D000839 ORTHO05D000664 2.2e-06 55.8 51 54.9
DCAR_009662 Daucus carota HOM05D000839 ORTHO05D000664 2.2e-06 55.8 45 57.8
MBI18_g19686_MAGBIO Magnolia biondii HOM05D000839 ORTHO05D000664 2.2e-06 55.8 49 57.1
MBI18_g27543_MAGBIO Magnolia biondii HOM05D000839 ORTHO05D000664 2.2e-06 55.8 69 46.4
MBI18_g41881_MAGBIO Magnolia biondii HOM05D000839 ORTHO05D000664 2.2e-06 55.8 49 57.1
Atru.chr2.2452 Acer truncatum HOM05D000839 ORTHO05D000664 2.8e-06 55.5 49 51.0
AL2G39970 Arabidopsis lyrata HOM05D000839 ORTHO05D000664 2.8e-06 55.5 54 51.9
Nitab4.5_0004200g0050 Nicotiana tabacum HOM05D000839 ORTHO05D000664 2.8e-06 55.5 51 52.9
SGA_v2.0_scaffold239G44000 Striga asiatica HOM05D000839 ORTHO05D000664 2.8e-06 55.5 59 52.5
GSVIVG01036714001 Vitis vinifera HOM05D000839 ORTHO05D000664 2.8e-06 55.5 45 57.8
Migut.M01500 Erythranthe guttata HOM05D000839 ORTHO05D000664 3.7e-06 55.1 53 50.9
Atru.chr12.654 Acer truncatum HOM05D000839 ORTHO05D000664 4.8e-06 54.7 49 57.1
Atru.chr12.680 Acer truncatum HOM05D000839 ORTHO05D000664 4.8e-06 54.7 49 57.1
arahy.Tifrunner.gnm1.ann1.N1ILT0 Arachis hypogaea HOM05D000839 ORTHO05D000664 4.8e-06 54.7 43 60.5
Peaxi162Scf00006g00191 Petunia axillaris HOM05D000839 ORTHO05D000664 6.3e-06 54.3 53 49.1
Solyc12g017380.3 Solanum lycopersicum HOM05D000839 ORTHO05D000664 6.3e-06 54.3 58 50.0
PGSC0003DMG400009659 Solanum tuberosum HOM05D000839 ORTHO05D000664 6.3e-06 54.3 58 50.0
vmacro20593 Vaccinium macrocarpon HOM05D000839 ORTHO05D000664 6.3e-06 54.3 49 55.1
vmacro20659 Vaccinium macrocarpon HOM05D000839 ORTHO05D000664 6.3e-06 54.3 49 55.1
Ah.01g013060 Amaranthus hybridus HOM05D000839 ORTHO05D000664 8.2e-06 53.9 54 48.1
SGA_v2.0_scaffold49G18179 Striga asiatica HOM05D000839 ORTHO05D000664 8.2e-06 53.9 39 61.5


User provided reference genes

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