Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p091948 Quercus lobata HOM05D004425 ORTHO05D337833 1.2e-98 363.2 190 100.0
QL03p015133 Quercus lobata HOM05D004425 ORTHO05D005783 7.7e-21 104.8 65 81.5
QL03p014334 Quercus lobata HOM05D004425 ORTHO05D004329 9.7e-16 87.8 64 73.4
QL02p037179 Quercus lobata HOM05D004425 ORTHO05D005783 2.7e-10 69.7 38 89.5
Cfa018276 Carpinus fangiana HOM05D004425 ORTHO05D005783 5.1e-09 65.5 38 81.6
Haze_17811 Corylus avellana HOM05D004425 ORTHO05D005783 5.1e-09 65.5 38 81.6
CiPaw.15G011900 Carya illinoinensis HOM05D004425 ORTHO05D005783 2.0e-08 63.5 38 78.9
CARHR291070 Cardamine hirsuta HOM05D004425 ORTHO05D005783 1.3e-07 60.8 39 74.4
Lalb_Chr19g0130031 Lupinus albus HOM05D004425 ORTHO05D005783 1.7e-07 60.5 50 56.0
Potri.002G063400 Populus trichocarpa HOM05D004425 ORTHO05D005783 2.8e-07 59.7 36 75.0
Rhsim11G0088600 Rhododendron simsii HOM05D004425 ORTHO05D005783 2.8e-07 59.7 36 77.8
Glyma.16G161600 Glycine max HOM05D004425 ORTHO05D005783 3.7e-07 59.3 52 57.7
Hma1.2p1_0678F.1_g202100 Hydrangea macrophylla HOM05D004425 ORTHO05D005783 3.7e-07 59.3 38 73.7
Manes.02G184000 Manihot esculenta HOM05D004425 ORTHO05D005783 3.7e-07 59.3 38 73.7
Sed0020223 Sechium edule HOM05D004425 ORTHO05D005783 3.7e-07 59.3 48 62.5
TWI60G0965 Tripterygium wilfordii HOM05D004425 ORTHO05D005783 3.7e-07 59.3 39 71.8
VMungo0464G1137 Vigna mungo HOM05D004425 ORTHO05D005783 3.7e-07 59.3 52 57.7
Ca_04667_v3 Cicer arietinum L. HOM05D004425 ORTHO05D005783 6.3e-07 58.5 52 53.8
Thhalv10018428m.g Eutrema salsugineum HOM05D004425 ORTHO05D005783 6.3e-07 58.5 36 75.0
TAR628G0201 Trochodendron aralioides HOM05D004425 ORTHO05D005783 6.3e-07 58.5 36 75.0
Carub.0002s1848 Capsella rubella HOM05D004425 ORTHO05D005783 8.2e-07 58.2 35 77.1
Oeu046065.1 Olea europaea HOM05D004425 ORTHO05D005783 8.2e-07 58.2 67 46.3
FvH4_2g12900 Fragaria vesca HOM05D004425 ORTHO05D005783 1.1e-06 57.8 38 68.4
FAN15G1954 Fragaria x ananassa HOM05D004425 ORTHO05D005783 1.1e-06 57.8 38 68.4
FAN20G2288 Fragaria x ananassa HOM05D004425 ORTHO05D005783 1.1e-06 57.8 38 68.4
FAN24G2283 Fragaria x ananassa HOM05D004425 ORTHO05D005783 1.1e-06 57.8 38 68.4
THA.LOC104810492 Tarenaya hassleriana HOM05D004425 ORTHO05D005783 1.1e-06 57.8 36 72.2
Glyma.10G220900 Glycine max HOM05D004425 ORTHO05D005783 1.4e-06 57.4 49 55.1
MD05G1034600 Malus domestica HOM05D004425 ORTHO05D005783 1.4e-06 57.4 48 60.4
Medtr1g097610 Medicago truncatula HOM05D004425 ORTHO05D005783 1.4e-06 57.4 49 59.2
PGR102G1394 Punica granatum HOM05D004425 ORTHO05D005783 1.4e-06 57.4 74 44.6
QL08p023752 Quercus lobata HOM05D000003 ORTHO05D000126 1.4e-06 57.4 121 38.0
AL2G31290 Arabidopsis lyrata HOM05D004425 ORTHO05D005783 1.8e-06 57.0 36 72.2
AUR62013449 Chenopodium quinoa HOM05D004425 ORTHO05D005783 1.8e-06 57.0 36 75.0
Cc10_g06490 Coffea canephora HOM05D004425 ORTHO05D005783 1.8e-06 57.0 36 69.4
RcHm_v2.0_Chr6g0274001 Rosa chinensis HOM05D004425 ORTHO05D005783 1.8e-06 57.0 38 68.4
vmacro01503 Vaccinium macrocarpon HOM05D004425 ORTHO05D005783 1.8e-06 57.0 38 71.1
GSVIVG01013706001 Vitis vinifera HOM05D004425 ORTHO05D005783 1.8e-06 57.0 36 69.4
Aa31LG4G8910 Aethionema arabicum HOM05D004425 ORTHO05D005783 2.4e-06 56.6 35 77.1
ClCG08G007280 Citrullus lanatus HOM05D004425 ORTHO05D005783 2.4e-06 56.6 36 72.2
MELO3C019971.2 Cucumis melo HOM05D004425 ORTHO05D005783 2.4e-06 56.6 44 61.4
CsaV3_6G004950 Cucumis sativus L. HOM05D004425 ORTHO05D005783 2.4e-06 56.6 36 72.2
Hund17360 Selenicereus undatus HOM05D004425 ORTHO05D005783 2.4e-06 56.6 35 74.3
Cpa.g.sc26.112 Carica papaya HOM05D004425 ORTHO05D005783 3.1e-06 56.2 39 61.5
Glyma.20G170600 Glycine max HOM05D004425 ORTHO05D005783 3.1e-06 56.2 49 53.1
Actinidia17768 Actinidia chinensis HOM05D004425 ORTHO05D005783 4.1e-06 55.8 36 69.4
ATR0006G031 Amborella trichopoda HOM05D004425 ORTHO05D005783 4.1e-06 55.8 35 71.4
AUR62007692 Chenopodium quinoa HOM05D004425 ORTHO05D005783 4.1e-06 55.8 36 75.0
AUR62007694 Chenopodium quinoa HOM05D004425 ORTHO05D005783 4.1e-06 55.8 36 75.0
Eucgr.F02682 Eucalyptus grandis HOM05D004425 ORTHO05D005783 4.1e-06 55.8 36 69.4
Lalb_Chr06g0161781 Lupinus albus HOM05D004425 ORTHO05D005783 4.1e-06 55.8 47 57.4
Nn6g32191 Nelumbo nucifera HOM05D004425 ORTHO05D005783 4.1e-06 55.8 36 69.4
Sabra05G0150700 Salix brachista HOM05D004425 ORTHO05D005783 4.1e-06 55.8 36 69.4
AT1G71720 Arabidopsis thaliana HOM05D004425 ORTHO05D005783 5.3e-06 55.5 35 71.4
CDE02G3532 Ceratophyllum demersum HOM05D004425 ORTHO05D005783 5.3e-06 55.5 34 73.5
Ciclev10000894m.g Citrus clementina HOM05D004425 ORTHO05D005783 5.3e-06 55.5 36 66.7
Lj2g0007374 Lotus japonicus HOM05D004425 ORTHO05D005783 5.3e-06 55.5 38 65.8
Atru.chr13.1991 Acer truncatum HOM05D004425 ORTHO05D005783 7.0e-06 55.1 35 68.6
Lj7A385T59 Lonicera japonica HOM05D004425 ORTHO05D005783 7.0e-06 55.1 36 66.7
Sed0006049 Sechium edule HOM05D004425 ORTHO05D005783 7.0e-06 55.1 34 76.5
TWI60G0364 Tripterygium wilfordii HOM05D004425 ORTHO05D005783 7.0e-06 55.1 39 66.7
Phvul.007G084200 Phaseolus vulgaris HOM05D004425 ORTHO05D005783 9.1e-06 54.7 49 53.1
Sc26g0002880 Simmondsia chinensis HOM05D004425 ORTHO05D005783 9.1e-06 54.7 57 56.1


User provided reference genes

Program Settings